/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf
		file1	1	11	27
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m3 MA0502.3 oligos_7nt_mkv2_m3 NFYB 0.778 0.637 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_7nt_mkv2_m3 MA1644.2 oligos_7nt_mkv2_m3 NFYC 0.852 0.542 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv2_m3 MA0060.4 oligos_7nt_mkv2_m3 NFYA 0.855 0.499 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv2_m3 MA0650.4 oligos_7nt_mkv2_m3 Hoxa13 0.825 0.481 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv2_m3 MA0642.3 oligos_7nt_mkv2_m3 EN2 0.751 0.478 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv2_m3 MA0889.2 oligos_7nt_mkv2_m3 GBX1 0.739 0.470 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv2_m3 MA0701.3 oligos_7nt_mkv2_m3 LHX9 0.717 0.456 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv2_m3 MA0644.3 oligos_7nt_mkv2_m3 ESX1 0.713 0.454 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv2_m3 MA0671.2 oligos_7nt_mkv2_m3 NFIX 0.828 0.452 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_7nt_mkv2_m3 MA0901.3 oligos_7nt_mkv2_m3 HOXB13 0.819 0.441 11 9 7 13 0.5385 0.6364 0.7778 D 4
oligos_7nt_mkv2_m3 MA0700.3 oligos_7nt_mkv2_m3 LHX2 0.808 0.441 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0708.3 oligos_7nt_mkv2_m3 MSX2 0.800 0.436 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0709.2 oligos_7nt_mkv2_m3 Msx3 0.795 0.434 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0666.3 oligos_7nt_mkv2_m3 MSX1 0.790 0.431 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0879.3 oligos_7nt_mkv2_m3 DLX1 0.774 0.422 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0909.4 oligos_7nt_mkv2_m3 Hoxd13 0.839 0.419 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_7nt_mkv2_m3 MA0717.2 oligos_7nt_mkv2_m3 RAX2 0.766 0.418 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0881.2 oligos_7nt_mkv2_m3 Dlx4 0.766 0.418 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0890.2 oligos_7nt_mkv2_m3 GBX2 0.765 0.417 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0894.2 oligos_7nt_mkv2_m3 HESX1 0.764 0.417 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_7nt_mkv2_m3 MA0718.2 oligos_7nt_mkv2_m3 RAX 0.763 0.416 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0880.2 oligos_7nt_mkv2_m3 Dlx3 0.763 0.416 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0027.3 oligos_7nt_mkv2_m3 EN1 0.761 0.415 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0720.2 oligos_7nt_mkv2_m3 Shox2 0.756 0.412 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0670.2 oligos_7nt_mkv2_m3 NFIA 0.755 0.412 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_7nt_mkv2_m3 MA0699.2 oligos_7nt_mkv2_m3 LBX2 0.752 0.410 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0721.2 oligos_7nt_mkv2_m3 UNCX 0.752 0.410 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0882.2 oligos_7nt_mkv2_m3 DLX6 0.751 0.410 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0716.2 oligos_7nt_mkv2_m3 PRRX1 0.749 0.409 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0662.2 oligos_7nt_mkv2_m3 MIXL1 0.749 0.408 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0125.2 oligos_7nt_mkv2_m3 Nobox 0.747 0.407 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_7nt_mkv2_m3 MA0630.2 oligos_7nt_mkv2_m3 SHOX 0.745 0.407 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_7nt_mkv2_m3 MA0634.2 oligos_7nt_mkv2_m3 ALX3 0.743 0.405 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 MA0654.2 oligos_7nt_mkv2_m3 ISX 0.740 0.404 11 6 6 11 0.5455 0.5455 1.0000 D 5 
 Host name	rsat
 Job started	2025-05-16.174640
 Job done	2025-05-16.174656
 Seconds	2.71
	user	2.71
	system	0.83
	cuser	11.46
;	csystem	1.17