One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2) |
 |
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; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; mwAAACAAAwh
; Alignment reference
a 9 17 31 30 29 0 32 34 30 14 10
c 14 3 0 1 2 34 2 0 4 3 13
g 7 5 0 1 1 0 0 0 0 3 2
t 4 9 3 2 2 0 0 0 0 14 9
|
| oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2) |
|
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; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mwAAACAAAwh
; cor=; Ncor=
a 9 17 31 30 29 0 32 34 30 14 10
c 14 3 0 1 2 34 2 0 4 3 13
g 7 5 0 1 1 0 0 0 0 3 2
t 4 9 3 2 2 0 0 0 0 14 9
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1) |
 |
|
|
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; mtCCCAGCAas
; Alignment reference
a 17 8 5 1 0 40 1 0 44 19 8
c 13 8 40 40 41 2 1 41 0 8 12
g 8 7 0 1 0 1 41 2 0 8 17
t 7 22 0 3 4 2 2 2 1 10 8
|
| oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1) |
|
|
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; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mtCCCAGCAas
; cor=; Ncor=
a 17 8 5 1 0 40 1 0 44 19 8
c 13 8 40 40 41 2 1 41 0 8 12
g 8 7 0 1 0 1 41 2 0 8 17
t 7 22 0 3 4 2 2 2 1 10 8
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3) |
 |
|
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; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; myAGCCAATww
; Alignment reference
a 11 4 26 1 2 2 25 26 4 9 8
c 7 8 1 1 22 24 0 1 0 5 6
g 3 4 0 25 1 0 1 0 0 5 3
t 6 11 0 0 2 1 1 0 23 8 10
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| oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3) |
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; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; myAGCCAATww
; cor=; Ncor=
a 11 4 26 1 2 2 25 26 4 9 8
c 7 8 1 1 22 24 0 1 0 5 6
g 3 4 0 25 1 0 1 0 0 5 3
t 6 11 0 0 2 1 1 0 23 8 10
|