One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift5 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift5 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=5; ncol=16; -----tccATTCCAyt ; Alignment reference a 0 0 0 0 0 9 15 15 66 1 1 1 0 66 14 10 c 0 0 0 0 0 13 34 29 0 0 0 66 58 0 17 11 g 0 0 0 0 0 8 7 14 2 0 0 0 7 2 10 7 t 0 0 0 0 0 38 12 10 0 67 67 1 3 0 27 40

MA0090.4_shift6 (TEAD1)
; oligos_6nt_mkv2_m2 versus MA0090.4 (TEAD1); m=1/10; ncol2=9; w=0; offset=1; strand=D; shift=6; score=0.697969; ------ACATTCCAG- ; cor=; Ncor= a 0 0 0 0 0 0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 0 c 0 0 0 0 0 0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 0 g 0 0 0 0 0 0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 0 t 0 0 0 0 0 0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 0

MA0809.3_shift6 (TEAD4)
; oligos_6nt_mkv2_m2 versus MA0809.3 (TEAD4); m=2/10; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.65352; ------ACATTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 c 0 0 0 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 g 0 0 0 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 t 0 0 0 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0

MA0808.1_shift6 (TEAD3)
; oligos_6nt_mkv2_m2 versus MA0808.1 (TEAD3); m=3/10; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.621761; ------rCATTCCw-- ; cor=; Ncor= a 0 0 0 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 c 0 0 0 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 g 0 0 0 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 t 0 0 0 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0

MA1121.2_shift6 (TEAD2)
; oligos_6nt_mkv2_m2 versus MA1121.2 (TEAD2); m=4/10; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.564255; ------ACATTCC--- ; cor=; Ncor= a 0 0 0 0 0 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 c 0 0 0 0 0 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 g 0 0 0 0 0 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 t 0 0 0 0 0 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0

MA0152.3_rc_shift8 (Nfatc2_rc)
; oligos_6nt_mkv2_m2 versus MA0152.3_rc (Nfatc2_rc); m=5/10; ncol2=8; w=0; offset=3; strand=R; shift=8; score=0.561848; --------TTTCCATt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 112.0 35.0 41.0 46.0 26.0 2844.0 121.0 321.0 c 0 0 0 0 0 0 0 0 79.0 45.0 65.0 3133.0 3118.0 101.0 329.0 292.0 g 0 0 0 0 0 0 0 0 104.0 19.0 38.0 27.0 17.0 124.0 206.0 460.0 t 0 0 0 0 0 0 0 0 2944.0 3140.0 3095.0 33.0 78.0 170.0 2583.0 2166.0

MA2333.1_shift7 (ZNF35)
; oligos_6nt_mkv2_m2 versus MA2333.1 (ZNF35); m=6/10; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.458928; -------AATTCTA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 13011.0 12763.0 836.0 719.0 1097.0 548.0 13931.0 0 0 c 0 0 0 0 0 0 0 834.0 690.0 655.0 762.0 12495.0 450.0 385.0 0 0 g 0 0 0 0 0 0 0 554.0 693.0 561.0 626.0 898.0 172.0 460.0 0 0 t 0 0 0 0 0 0 0 871.0 1124.0 13218.0 13163.0 780.0 14100.0 494.0 0 0

MA0625.3_rc_shift8 (NFATC3_rc)
; oligos_6nt_mkv2_m2 versus MA0625.3_rc (NFATC3_rc); m=7/10; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.430594; --------tTTCCr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 0 0 c 0 0 0 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 0 0 g 0 0 0 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 0 0 t 0 0 0 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0 0 0

MA0624.3_rc_shift8 (Nfatc1_rc)
; oligos_6nt_mkv2_m2 versus MA0624.3_rc (Nfatc1_rc); m=8/10; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.421509; --------TTTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0

MA1589.2_rc_shift0 (ZNF140_rc)
; oligos_6nt_mkv2_m2 versus MA1589.2_rc (ZNF140_rc); m=9/10; ncol2=19; w=-5; offset=-5; strand=R; shift=0; score=0.408696; acccAGCAATTCyrCT ; cor=; Ncor= a 1068.0 190.0 175.0 158.0 1422.0 183.0 5.0 1688.0 1718.0 3.0 8.0 16.0 118.0 919.0 16.0 10.0 c 248.0 1005.0 1168.0 1241.0 69.0 22.0 1806.0 48.0 27.0 12.0 7.0 1812.0 1194.0 36.0 1787.0 108.0 g 290.0 190.0 159.0 131.0 128.0 1606.0 10.0 33.0 87.0 9.0 2.0 1.0 6.0 875.0 11.0 14.0 t 234.0 455.0 338.0 310.0 221.0 29.0 19.0 71.0 8.0 1816.0 1823.0 11.0 522.0 10.0 26.0 1708.0

MA1624.2_shift9 (Stat5a)
; oligos_6nt_mkv2_m2 versus MA1624.2 (Stat5a); m=10/10; ncol2=9; w=0; offset=4; strand=D; shift=9; score=0.40103; ---------TTCCAAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 314.0 151.0 66.0 71.0 3191.0 3351.0 19.0 c 0 0 0 0 0 0 0 0 0 372.0 89.0 4381.0 4046.0 588.0 80.0 22.0 g 0 0 0 0 0 0 0 0 0 207.0 144.0 26.0 28.0 137.0 980.0 4441.0 t 0 0 0 0 0 0 0 0 0 3621.0 4130.0 41.0 369.0 598.0 103.0 32.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift5 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=5; ncol=16; -----tccATTCCAyt ; Alignment reference a 0 0 0 0 0 9 15 15 66 1 1 1 0 66 14 10 c 0 0 0 0 0 13 34 29 0 0 0 66 58 0 17 11 g 0 0 0 0 0 8 7 14 2 0 0 0 7 2 10 7 t 0 0 0 0 0 38 12 10 0 67 67 1 3 0 27 40
MA0090.4_shift6 (TEAD1)				; oligos_6nt_mkv2_m2 versus MA0090.4 (TEAD1); m=1/10; ncol2=9; w=0; offset=1; strand=D; shift=6; score=0.697969; ------ACATTCCAG- ; cor=; Ncor= a 0 0 0 0 0 0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 0 c 0 0 0 0 0 0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 0 g 0 0 0 0 0 0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 0 t 0 0 0 0 0 0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 0
MA0809.3_shift6 (TEAD4)				; oligos_6nt_mkv2_m2 versus MA0809.3 (TEAD4); m=2/10; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.65352; ------ACATTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 c 0 0 0 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 g 0 0 0 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 t 0 0 0 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0
MA0808.1_shift6 (TEAD3)				; oligos_6nt_mkv2_m2 versus MA0808.1 (TEAD3); m=3/10; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.621761; ------rCATTCCw-- ; cor=; Ncor= a 0 0 0 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 c 0 0 0 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 g 0 0 0 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 t 0 0 0 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0
MA1121.2_shift6 (TEAD2)				; oligos_6nt_mkv2_m2 versus MA1121.2 (TEAD2); m=4/10; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.564255; ------ACATTCC--- ; cor=; Ncor= a 0 0 0 0 0 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 c 0 0 0 0 0 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 g 0 0 0 0 0 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 t 0 0 0 0 0 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0
MA0152.3_rc_shift8 (Nfatc2_rc)				; oligos_6nt_mkv2_m2 versus MA0152.3_rc (Nfatc2_rc); m=5/10; ncol2=8; w=0; offset=3; strand=R; shift=8; score=0.561848; --------TTTCCATt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 112.0 35.0 41.0 46.0 26.0 2844.0 121.0 321.0 c 0 0 0 0 0 0 0 0 79.0 45.0 65.0 3133.0 3118.0 101.0 329.0 292.0 g 0 0 0 0 0 0 0 0 104.0 19.0 38.0 27.0 17.0 124.0 206.0 460.0 t 0 0 0 0 0 0 0 0 2944.0 3140.0 3095.0 33.0 78.0 170.0 2583.0 2166.0
MA2333.1_shift7 (ZNF35)				; oligos_6nt_mkv2_m2 versus MA2333.1 (ZNF35); m=6/10; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.458928; -------AATTCTA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 13011.0 12763.0 836.0 719.0 1097.0 548.0 13931.0 0 0 c 0 0 0 0 0 0 0 834.0 690.0 655.0 762.0 12495.0 450.0 385.0 0 0 g 0 0 0 0 0 0 0 554.0 693.0 561.0 626.0 898.0 172.0 460.0 0 0 t 0 0 0 0 0 0 0 871.0 1124.0 13218.0 13163.0 780.0 14100.0 494.0 0 0
MA0625.3_rc_shift8 (NFATC3_rc)				; oligos_6nt_mkv2_m2 versus MA0625.3_rc (NFATC3_rc); m=7/10; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.430594; --------tTTCCr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 0 0 c 0 0 0 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 0 0 g 0 0 0 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 0 0 t 0 0 0 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0 0 0
MA0624.3_rc_shift8 (Nfatc1_rc)				; oligos_6nt_mkv2_m2 versus MA0624.3_rc (Nfatc1_rc); m=8/10; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.421509; --------TTTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0
MA1589.2_rc_shift0 (ZNF140_rc)				; oligos_6nt_mkv2_m2 versus MA1589.2_rc (ZNF140_rc); m=9/10; ncol2=19; w=-5; offset=-5; strand=R; shift=0; score=0.408696; acccAGCAATTCyrCT ; cor=; Ncor= a 1068.0 190.0 175.0 158.0 1422.0 183.0 5.0 1688.0 1718.0 3.0 8.0 16.0 118.0 919.0 16.0 10.0 c 248.0 1005.0 1168.0 1241.0 69.0 22.0 1806.0 48.0 27.0 12.0 7.0 1812.0 1194.0 36.0 1787.0 108.0 g 290.0 190.0 159.0 131.0 128.0 1606.0 10.0 33.0 87.0 9.0 2.0 1.0 6.0 875.0 11.0 14.0 t 234.0 455.0 338.0 310.0 221.0 29.0 19.0 71.0 8.0 1816.0 1823.0 11.0 522.0 10.0 26.0 1708.0
MA1624.2_shift9 (Stat5a)				; oligos_6nt_mkv2_m2 versus MA1624.2 (Stat5a); m=10/10; ncol2=9; w=0; offset=4; strand=D; shift=9; score=0.40103; ---------TTCCAAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 314.0 151.0 66.0 71.0 3191.0 3351.0 19.0 c 0 0 0 0 0 0 0 0 0 372.0 89.0 4381.0 4046.0 588.0 80.0 22.0 g 0 0 0 0 0 0 0 0 0 207.0 144.0 26.0 28.0 137.0 980.0 4441.0 t 0 0 0 0 0 0 0 0 0 3621.0 4130.0 41.0 369.0 598.0 103.0 32.0