/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf
		file1	1	10	50
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m5 MA1516.2 oligos_6nt_mkv2_m5 KLF3 0.715 0.715 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 MA1513.2 oligos_6nt_mkv2_m5 KLF15 0.891 0.713 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv2_m5 MA1959.2 oligos_6nt_mkv2_m5 KLF7 0.860 0.688 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6nt_mkv2_m5 MA0493.3 oligos_6nt_mkv2_m5 KLF1 0.840 0.672 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6nt_mkv2_m5 MA0599.1 oligos_6nt_mkv2_m5 KLF5 0.813 0.665 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m5 MA0865.3 oligos_6nt_mkv2_m5 E2F8 0.737 0.663 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv2_m5 MA0742.2 oligos_6nt_mkv2_m5 KLF12 0.907 0.660 10 9 8 11 0.7273 0.8000 0.8889 R 2
oligos_6nt_mkv2_m5 MA1961.2 oligos_6nt_mkv2_m5 PATZ1 0.874 0.655 10 11 9 12 0.7500 0.9000 0.8182 R 1
oligos_6nt_mkv2_m5 MA0516.3 oligos_6nt_mkv2_m5 SP2 0.896 0.652 10 9 8 11 0.7273 0.8000 0.8889 R 2
oligos_6nt_mkv2_m5 MA1511.2 oligos_6nt_mkv2_m5 KLF10 0.876 0.637 10 9 8 11 0.7273 0.8000 0.8889 R 2
oligos_6nt_mkv2_m5 MA0685.2 oligos_6nt_mkv2_m5 SP4 0.867 0.631 10 9 8 11 0.7273 0.8000 0.8889 R 2
oligos_6nt_mkv2_m5 MA0740.2 oligos_6nt_mkv2_m5 KLF14 0.864 0.628 10 9 8 11 0.7273 0.8000 0.8889 R 2
oligos_6nt_mkv2_m5 MA0079.5 oligos_6nt_mkv2_m5 SP1 0.859 0.625 10 9 8 11 0.7273 0.8000 0.8889 R 2
oligos_6nt_mkv2_m5 MA1515.2 oligos_6nt_mkv2_m5 KLF2 0.771 0.616 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv2_m5 MA1122.2 oligos_6nt_mkv2_m5 TFDP1 0.751 0.600 10 8 8 10 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv2_m5 MA0039.5 oligos_6nt_mkv2_m5 KLF4 0.750 0.600 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv2_m5 MA1522.2 oligos_6nt_mkv2_m5 MAZ 0.747 0.598 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv2_m5 MA0471.3 oligos_6nt_mkv2_m5 E2F6 0.737 0.590 10 8 8 10 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv2_m5 MA2328.1 oligos_6nt_mkv2_m5 ZBED4 0.871 0.581 10 10 8 12 0.6667 0.8000 0.8000 D -2
oligos_6nt_mkv2_m5 MA0746.3 oligos_6nt_mkv2_m5 SP3 0.770 0.577 10 11 9 12 0.7500 0.9000 0.8182 D 1
oligos_6nt_mkv2_m5 MA0741.1 oligos_6nt_mkv2_m5 KLF16 0.728 0.546 10 11 9 12 0.7500 0.9000 0.8182 D 1
oligos_6nt_mkv2_m5 MA0736.1 oligos_6nt_mkv2_m5 GLIS2 0.756 0.540 10 14 10 14 0.7143 1.0000 0.7143 D -2
oligos_6nt_mkv2_m5 MA1564.2 oligos_6nt_mkv2_m5 SP9 0.779 0.519 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m5 MA1630.3 oligos_6nt_mkv2_m5 ZNF281 0.767 0.511 10 10 8 12 0.6667 0.8000 0.8000 R 2
oligos_6nt_mkv2_m5 MA1653.2 oligos_6nt_mkv2_m5 ZNF148 0.766 0.510 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m5 MA0751.2 oligos_6nt_mkv2_m5 ZIC4 0.710 0.507 10 14 10 14 0.7143 1.0000 0.7143 D -2
oligos_6nt_mkv2_m5 MA1578.2 oligos_6nt_mkv2_m5 VEZF1 0.832 0.499 10 6 6 10 0.6000 0.6000 1.0000 D 0
oligos_6nt_mkv2_m5 MA1584.2 oligos_6nt_mkv2_m5 ZIC5 0.730 0.487 10 15 10 15 0.6667 1.0000 0.6667 D -2
oligos_6nt_mkv2_m5 MA0753.3 oligos_6nt_mkv2_m5 ZNF740 0.715 0.477 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m5 MA1512.2 oligos_6nt_mkv2_m5 KLF11 0.705 0.470 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m5 MA1615.2 oligos_6nt_mkv2_m5 Plagl1 0.713 0.454 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv2_m5 MA0748.3 oligos_6nt_mkv2_m5 YY2 0.822 0.448 10 7 6 11 0.5455 0.6000 0.8571 R 4
oligos_6nt_mkv2_m5 MA0747.2 oligos_6nt_mkv2_m5 SP8 0.708 0.436 10 11 8 13 0.6154 0.8000 0.7273 D 2
oligos_6nt_mkv2_m5 MA1117.2 oligos_6nt_mkv2_m5 RELB 0.798 0.435 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv2_m5 MA1650.2 oligos_6nt_mkv2_m5 ZBTB14 0.830 0.415 10 8 6 12 0.5000 0.6000 0.7500 D 4
oligos_6nt_mkv2_m5 MA1548.2 oligos_6nt_mkv2_m5 PLAGL2 0.824 0.412 10 8 6 12 0.5000 0.6000 0.7500 D -2 
 Host name	rsat
 Job started	2025-05-16.175300
 Job done	2025-05-16.175312
 Seconds	1.77
	user	1.77
	system	0.67
	cuser	8.36
;	csystem	0.98