One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175219_2025-05-16.175219_UyZibC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift2 ; 37 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=10; shift=2; ncol=12; --vkCCCCGCsc ; Alignment reference a 0 0 13 8 1 0 1 0 1 2 7 9 c 0 0 15 9 48 47 49 50 0 45 23 19 g 0 0 15 19 1 3 0 0 49 0 13 12 t 0 0 7 14 0 0 0 0 0 3 7 10

MA1516.2_shift2 (KLF3)
; oligos_6nt_mkv2_m5 versus MA1516.2 (KLF3); m=1/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.715392; --grCCrCGCCC ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0

MA1513.2_shift4 (KLF15)
; oligos_6nt_mkv2_m5 versus MA1513.2 (KLF15); m=2/36; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.713017; ----cCCCGCCC ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0

MA1959.2_rc_shift4 (KLF7_rc)
; oligos_6nt_mkv2_m5 versus MA1959.2_rc (KLF7_rc); m=3/36; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.688255; ----CcMCGCCC ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0

MA0493.3_rc_shift4 (KLF1_rc)
; oligos_6nt_mkv2_m5 versus MA0493.3_rc (KLF1_rc); m=4/36; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.671723; ----CCmCrCCC ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0

MA0599.1_shift3 (KLF5)
; oligos_6nt_mkv2_m5 versus MA0599.1 (KLF5); m=5/36; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.664811; ---gCCMCrCCC ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0

MA0865.3_shift3 (E2F8)
; oligos_6nt_mkv2_m5 versus MA0865.3 (E2F8); m=6/36; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.663106; ---tTCCCGCcA ; cor=; Ncor= a 0 0 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 c 0 0 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 g 0 0 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 t 0 0 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_6nt_mkv2_m5 versus MA0742.2_rc (KLF12_rc); m=7/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.659565; ----CCCCGCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636

MA1961.2_rc_shift3 (PATZ1_rc)
; oligos_6nt_mkv2_m5 versus MA1961.2_rc (PATZ1_rc); m=8/36; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.655169; ---sCCCCkCCC ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0

MA0516.3_rc_shift4 (SP2_rc)
; oligos_6nt_mkv2_m5 versus MA0516.3_rc (SP2_rc); m=9/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score= 0.6516; ----cCCCGCCC ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_6nt_mkv2_m5 versus MA1511.2_rc (KLF10_rc); m=10/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.637253; ----CCMCGCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061

MA0685.2_rc_shift4 (SP4_rc)
; oligos_6nt_mkv2_m5 versus MA0685.2_rc (SP4_rc); m=11/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.630619; ----CyCCKCCC ; cor=; Ncor= a 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 c 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 g 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 t 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_6nt_mkv2_m5 versus MA0740.2_rc (KLF14_rc); m=12/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.628453; ----CCMCGCCC ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877

MA0079.5_rc_shift4 (SP1_rc)
; oligos_6nt_mkv2_m5 versus MA0079.5_rc (SP1_rc); m=13/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.624887; ----CyCCKCCC ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485

MA1515.2_shift4 (KLF2)
; oligos_6nt_mkv2_m5 versus MA1515.2 (KLF2); m=14/36; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.616438; ----CCmCrCCC ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0

MA1122.2_rc_shift3 (TFDP1_rc)
; oligos_6nt_mkv2_m5 versus MA1122.2_rc (TFDP1_rc); m=15/36; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.600453; ---TTCCCGCs- ; cor=; Ncor= a 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 c 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 g 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 t 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0

MA0039.5_shift4 (KLF4)
; oligos_6nt_mkv2_m5 versus MA0039.5 (KLF4); m=16/36; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.599939; ----CCCCACCC ; cor=; Ncor= a 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 c 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 g 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 t 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0

MA1522.2_shift4 (MAZ)
; oligos_6nt_mkv2_m5 versus MA1522.2 (MAZ); m=17/36; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.597707; ----CCCCTCCc ; cor=; Ncor= a 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 c 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 g 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 t 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0

MA0471.3_rc_shift3 (E2F6_rc)
; oligos_6nt_mkv2_m5 versus MA0471.3_rc (E2F6_rc); m=18/36; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.589644; ---TTCCCGCC- ; cor=; Ncor= a 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 c 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 g 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 t 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0

MA2328.1_shift0 (ZBED4)
; oligos_6nt_mkv2_m5 versus MA2328.1 (ZBED4); m=19/36; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.580836; CcCGCyCCGC-- ; cor=; Ncor= a 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 0 c 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 0 g 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 0 t 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0 0

MA0746.3_shift3 (SP3)
; oligos_6nt_mkv2_m5 versus MA0746.3 (SP3); m=20/36; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.57745; ---rCCACGCCC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0

MA0741.1_shift3 (KLF16)
; oligos_6nt_mkv2_m5 versus MA0741.1 (KLF16); m=21/36; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.545884; ---gmCMCgCCC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0

MA0736.1_shift0 (GLIS2)
; oligos_6nt_mkv2_m5 versus MA0736.1 (GLIS2); m=22/36; ncol2=14; w=-2; offset=-2; strand=D; shift=0; score=0.539729; kACCCCCCrCra ; cor=; Ncor= a 74.0 813.0 3.0 4.0 7.0 2.0 56.0 52.0 412.0 3.0 459.0 484.0 c 179.0 94.0 1072.0 1074.0 1074.0 1087.0 1061.0 1056.0 12.0 1080.0 36.0 16.0 g 929.0 130.0 3.0 0.0 0.0 0.0 0.0 1.0 915.0 28.0 909.0 234.0 t 439.0 1.0 5.0 1.0 14.0 0.0 4.0 99.0 50.0 69.0 64.0 228.0

MA1564.2_shift4 (SP9)
; oligos_6nt_mkv2_m5 versus MA1564.2 (SP9); m=23/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.519157; ----cCmCGCCC ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0

MA1630.3_rc_shift4 (ZNF281_rc)
; oligos_6nt_mkv2_m5 versus MA1630.3_rc (ZNF281_rc); m=24/36; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.511115; ----CCCCTCCC ; cor=; Ncor= a 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 c 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 g 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 t 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0

MA1653.2_shift4 (ZNF148)
; oligos_6nt_mkv2_m5 versus MA1653.2 (ZNF148); m=25/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.510337; ----CCCCTCCC ; cor=; Ncor= a 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 c 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 g 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 t 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0

MA0751.2_shift0 (ZIC4)
; oligos_6nt_mkv2_m5 versus MA0751.2 (ZIC4); m=26/36; ncol2=14; w=-2; offset=-2; strand=D; shift=0; score=0.506994; krCCCCCyGykG ; cor=; Ncor= a 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 c 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 g 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 t 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0

MA1578.2_shift2 (VEZF1)
; oligos_6nt_mkv2_m5 versus MA1578.2 (VEZF1); m=27/36; ncol2=6; w=0; offset=0; strand=D; shift=2; score=0.499391; --CCCCCC---- ; cor=; Ncor= a 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 c 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 g 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 t 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0

MA1584.2_shift0 (ZIC5)
; oligos_6nt_mkv2_m5 versus MA1584.2 (ZIC5); m=28/36; ncol2=15; w=-2; offset=-2; strand=D; shift=0; score=0.486701; gACCCCCCGCtG ; cor=; Ncor= a 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 c 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 g 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 t 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0

MA0753.3_shift4 (ZNF740)
; oligos_6nt_mkv2_m5 versus MA0753.3 (ZNF740); m=29/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.476787; ----CCCCCCCC ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0

MA1512.2_shift4 (KLF11)
; oligos_6nt_mkv2_m5 versus MA1512.2 (KLF11); m=30/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.469925; ----cCACGCCC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0

MA1615.2_rc_shift1 (Plagl1_rc)
; oligos_6nt_mkv2_m5 versus MA1615.2_rc (Plagl1_rc); m=31/36; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.453961; -TGGCCCCa--- ; cor=; Ncor= a 0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 c 0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 g 0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 t 0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0

MA0748.3_rc_shift6 (YY2_rc)
; oligos_6nt_mkv2_m5 versus MA0748.3_rc (YY2_rc); m=32/36; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.448364; ------CCGCCA ; cor=; Ncor= a 0 0 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 c 0 0 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 g 0 0 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 t 0 0 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0

MA0747.2_shift4 (SP8)
; oligos_6nt_mkv2_m5 versus MA0747.2 (SP8); m=33/36; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.435585; ----mCACgCCC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0

MA1117.2_shift1 (RELB)
; oligos_6nt_mkv2_m5 versus MA1117.2 (RELB); m=34/36; ncol2=7; w=-1; offset=-1; strand=D; shift=1; score=0.435245; -ATTCCCC---- ; cor=; Ncor= a 0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 0 0 0 0 c 0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 0 0 0 0 g 0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 0 0 0 0 t 0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 0 0 0 0

MA1650.2_shift6 (ZBTB14)
; oligos_6nt_mkv2_m5 versus MA1650.2 (ZBTB14); m=35/36; ncol2=8; w=0; offset=4; strand=D; shift=6; score=0.415242; ------CCGCGC ; cor=; Ncor= a 0 0 0 0 0 0 335.0 41.0 93.0 68.0 132.0 56.0 c 0 0 0 0 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 g 0 0 0 0 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 t 0 0 0 0 0 0 73.0 59.0 62.0 82.0 67.0 52.0

MA1548.2_shift0 (PLAGL2)
; oligos_6nt_mkv2_m5 versus MA1548.2 (PLAGL2); m=36/36; ncol2=8; w=-2; offset=-2; strand=D; shift=0; score=0.411786; GGGCCCCC---- ; cor=; Ncor= a 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 0 0 0 0 c 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 0 0 0 0 g 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 0 0 0 0 t 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift5 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift5 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=5; ncol=16; -----tccATTCCAyt ; Alignment reference a 0 0 0 0 0 9 15 15 66 1 1 1 0 66 14 10 c 0 0 0 0 0 13 34 29 0 0 0 66 58 0 17 11 g 0 0 0 0 0 8 7 14 2 0 0 0 7 2 10 7 t 0 0 0 0 0 38 12 10 0 67 67 1 3 0 27 40

MA0090.4_shift6 (TEAD1)
; oligos_6nt_mkv2_m2 versus MA0090.4 (TEAD1); m=1/10; ncol2=9; w=0; offset=1; strand=D; shift=6; score=0.697969; ------ACATTCCAG- ; cor=; Ncor= a 0 0 0 0 0 0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 0 c 0 0 0 0 0 0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 0 g 0 0 0 0 0 0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 0 t 0 0 0 0 0 0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 0

MA0809.3_shift6 (TEAD4)
; oligos_6nt_mkv2_m2 versus MA0809.3 (TEAD4); m=2/10; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.65352; ------ACATTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 c 0 0 0 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 g 0 0 0 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 t 0 0 0 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0

MA0808.1_shift6 (TEAD3)
; oligos_6nt_mkv2_m2 versus MA0808.1 (TEAD3); m=3/10; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.621761; ------rCATTCCw-- ; cor=; Ncor= a 0 0 0 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 c 0 0 0 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 g 0 0 0 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 t 0 0 0 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0

MA1121.2_shift6 (TEAD2)
; oligos_6nt_mkv2_m2 versus MA1121.2 (TEAD2); m=4/10; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.564255; ------ACATTCC--- ; cor=; Ncor= a 0 0 0 0 0 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 c 0 0 0 0 0 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 g 0 0 0 0 0 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 t 0 0 0 0 0 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0

MA0152.3_rc_shift8 (Nfatc2_rc)
; oligos_6nt_mkv2_m2 versus MA0152.3_rc (Nfatc2_rc); m=5/10; ncol2=8; w=0; offset=3; strand=R; shift=8; score=0.561848; --------TTTCCATt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 112.0 35.0 41.0 46.0 26.0 2844.0 121.0 321.0 c 0 0 0 0 0 0 0 0 79.0 45.0 65.0 3133.0 3118.0 101.0 329.0 292.0 g 0 0 0 0 0 0 0 0 104.0 19.0 38.0 27.0 17.0 124.0 206.0 460.0 t 0 0 0 0 0 0 0 0 2944.0 3140.0 3095.0 33.0 78.0 170.0 2583.0 2166.0

MA2333.1_shift7 (ZNF35)
; oligos_6nt_mkv2_m2 versus MA2333.1 (ZNF35); m=6/10; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.458928; -------AATTCTA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 13011.0 12763.0 836.0 719.0 1097.0 548.0 13931.0 0 0 c 0 0 0 0 0 0 0 834.0 690.0 655.0 762.0 12495.0 450.0 385.0 0 0 g 0 0 0 0 0 0 0 554.0 693.0 561.0 626.0 898.0 172.0 460.0 0 0 t 0 0 0 0 0 0 0 871.0 1124.0 13218.0 13163.0 780.0 14100.0 494.0 0 0

MA0625.3_rc_shift8 (NFATC3_rc)
; oligos_6nt_mkv2_m2 versus MA0625.3_rc (NFATC3_rc); m=7/10; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.430594; --------tTTCCr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 0 0 c 0 0 0 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 0 0 g 0 0 0 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 0 0 t 0 0 0 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0 0 0

MA0624.3_rc_shift8 (Nfatc1_rc)
; oligos_6nt_mkv2_m2 versus MA0624.3_rc (Nfatc1_rc); m=8/10; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.421509; --------TTTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0

MA1589.2_rc_shift0 (ZNF140_rc)
; oligos_6nt_mkv2_m2 versus MA1589.2_rc (ZNF140_rc); m=9/10; ncol2=19; w=-5; offset=-5; strand=R; shift=0; score=0.408696; acccAGCAATTCyrCT ; cor=; Ncor= a 1068.0 190.0 175.0 158.0 1422.0 183.0 5.0 1688.0 1718.0 3.0 8.0 16.0 118.0 919.0 16.0 10.0 c 248.0 1005.0 1168.0 1241.0 69.0 22.0 1806.0 48.0 27.0 12.0 7.0 1812.0 1194.0 36.0 1787.0 108.0 g 290.0 190.0 159.0 131.0 128.0 1606.0 10.0 33.0 87.0 9.0 2.0 1.0 6.0 875.0 11.0 14.0 t 234.0 455.0 338.0 310.0 221.0 29.0 19.0 71.0 8.0 1816.0 1823.0 11.0 522.0 10.0 26.0 1708.0

MA1624.2_shift9 (Stat5a)
; oligos_6nt_mkv2_m2 versus MA1624.2 (Stat5a); m=10/10; ncol2=9; w=0; offset=4; strand=D; shift=9; score=0.40103; ---------TTCCAAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 314.0 151.0 66.0 71.0 3191.0 3351.0 19.0 c 0 0 0 0 0 0 0 0 0 372.0 89.0 4381.0 4046.0 588.0 80.0 22.0 g 0 0 0 0 0 0 0 0 0 207.0 144.0 26.0 28.0 137.0 980.0 4441.0 t 0 0 0 0 0 0 0 0 0 3621.0 4130.0 41.0 369.0 598.0 103.0 32.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift2 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=10; shift=2; ncol=12; --msCTAGGCra ; Alignment reference a 0 0 16 10 0 0 46 1 2 1 16 18 c 0 0 18 14 46 0 2 3 1 45 10 11 g 0 0 8 14 2 0 0 42 41 0 12 10 t 0 0 6 10 0 48 0 2 4 2 10 9

MA1979.2_shift1 (ZNF416)
; oligos_6nt_mkv2_m4 versus MA1979.2 (ZNF416); m=1/4; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.577801; -TaTCTGGGCa- ; cor=; Ncor= a 0 47.0 197.0 48.0 1.0 2.0 1.0 2.0 0.0 4.0 212.0 0 c 0 32.0 25.0 28.0 334.0 6.0 7.0 5.0 1.0 320.0 38.0 0 g 0 26.0 77.0 15.0 7.0 1.0 335.0 335.0 341.0 3.0 29.0 0 t 0 240.0 46.0 254.0 3.0 336.0 2.0 3.0 3.0 18.0 66.0 0

MA1153.2_rc_shift4 (Smad4_rc)
; oligos_6nt_mkv2_m4 versus MA1153.2_rc (Smad4_rc); m=2/4; ncol2=7; w=0; offset=2; strand=R; shift=4; score=0.51455; ----CyAGACr- ; cor=; Ncor= a 0 0 0 0 0.0 0.0 1000.0 0.0 1000.0 0.0 581.0 0 c 0 0 0 0 1000.0 404.0 0.0 0.0 0.0 1000.0 81.0 0 g 0 0 0 0 0.0 0.0 0.0 1000.0 0.0 0.0 250.0 0 t 0 0 0 0 0.0 596.0 0.0 0.0 0.0 0.0 88.0 0

MA0161.3_shift4 (NFIC)
; oligos_6nt_mkv2_m4 versus MA0161.3 (NFIC); m=3/4; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.512735; ----CTTGGCA- ; cor=; Ncor= a 0 0 0 0 412.0 154.0 352.0 310.0 223.0 264.0 10158.0 0 c 0 0 0 0 10542.0 303.0 333.0 129.0 121.0 10725.0 397.0 0 g 0 0 0 0 329.0 369.0 177.0 11087.0 10973.0 88.0 478.0 0 t 0 0 0 0 324.0 10781.0 10745.0 81.0 290.0 530.0 574.0 0

MA1724.2_rc_shift0 (Rfx6_rc)
; oligos_6nt_mkv2_m4 versus MA1724.2_rc (Rfx6_rc); m=4/4; ncol2=9; w=-2; offset=-2; strand=R; shift=0; score=0.456973; GTTGCTAGG--- ; cor=; Ncor= a 635.0 213.0 216.0 339.0 54.0 66.0 6994.0 810.0 272.0 0 0 0 c 552.0 339.0 132.0 359.0 8215.0 1205.0 146.0 242.0 232.0 0 0 0 g 6811.0 258.0 117.0 7474.0 102.0 64.0 1066.0 6405.0 7859.0 0 0 0 t 552.0 7740.0 8085.0 378.0 179.0 7215.0 344.0 1093.0 187.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift2 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=11; shift=2; ncol=13; --ryCTAGGCArv ; Alignment reference a 0 0 20 15 2 2 62 4 1 2 59 19 21 c 0 0 16 21 65 1 3 0 3 61 6 18 20 g 0 0 20 17 2 1 4 67 68 4 4 20 21 t 0 0 17 20 4 69 4 2 1 6 4 16 11

MA1979.2_shift1 (ZNF416)
; oligos_7nt_mkv2_m5 versus MA1979.2 (ZNF416); m=1/7; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.57217; -TaTCTGGGCa-- ; cor=; Ncor= a 0 47.0 197.0 48.0 1.0 2.0 1.0 2.0 0.0 4.0 212.0 0 0 c 0 32.0 25.0 28.0 334.0 6.0 7.0 5.0 1.0 320.0 38.0 0 0 g 0 26.0 77.0 15.0 7.0 1.0 335.0 335.0 341.0 3.0 29.0 0 0 t 0 240.0 46.0 254.0 3.0 336.0 2.0 3.0 3.0 18.0 66.0 0 0

MA0161.3_shift4 (NFIC)
; oligos_7nt_mkv2_m5 versus MA0161.3 (NFIC); m=2/7; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.521491; ----CTTGGCA-- ; cor=; Ncor= a 0 0 0 0 412.0 154.0 352.0 310.0 223.0 264.0 10158.0 0 0 c 0 0 0 0 10542.0 303.0 333.0 129.0 121.0 10725.0 397.0 0 0 g 0 0 0 0 329.0 369.0 177.0 11087.0 10973.0 88.0 478.0 0 0 t 0 0 0 0 324.0 10781.0 10745.0 81.0 290.0 530.0 574.0 0 0

MA1153.2_rc_shift4 (Smad4_rc)
; oligos_7nt_mkv2_m5 versus MA1153.2_rc (Smad4_rc); m=3/7; ncol2=7; w=0; offset=2; strand=R; shift=4; score=0.452493; ----CyAGACr-- ; cor=; Ncor= a 0 0 0 0 0.0 0.0 1000.0 0.0 1000.0 0.0 581.0 0 0 c 0 0 0 0 1000.0 404.0 0.0 0.0 0.0 1000.0 81.0 0 0 g 0 0 0 0 0.0 0.0 0.0 1000.0 0.0 0.0 250.0 0 0 t 0 0 0 0 0.0 596.0 0.0 0.0 0.0 0.0 88.0 0 0

MA1724.2_rc_shift0 (Rfx6_rc)
; oligos_7nt_mkv2_m5 versus MA1724.2_rc (Rfx6_rc); m=4/7; ncol2=9; w=-2; offset=-2; strand=R; shift=0; score=0.434298; GTTGCTAGG---- ; cor=; Ncor= a 635.0 213.0 216.0 339.0 54.0 66.0 6994.0 810.0 272.0 0 0 0 0 c 552.0 339.0 132.0 359.0 8215.0 1205.0 146.0 242.0 232.0 0 0 0 0 g 6811.0 258.0 117.0 7474.0 102.0 64.0 1066.0 6405.0 7859.0 0 0 0 0 t 552.0 7740.0 8085.0 378.0 179.0 7215.0 344.0 1093.0 187.0 0 0 0 0

MA0670.2_rc_shift5 (NFIA_rc)
; oligos_7nt_mkv2_m5 versus MA0670.2_rc (NFIA_rc); m=5/7; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.429283; -----TTGGCA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 95496.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 98253.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 93394.0 93597.0 0.0 0.0 0 0 t 0 0 0 0 0 89418.0 89071.0 0.0 0.0 0.0 0.0 0 0

MA1730.2_rc_shift6 (ZNF708_rc)
; oligos_7nt_mkv2_m5 versus MA1730.2_rc (ZNF708_rc); m=6/7; ncol2=9; w=0; offset=4; strand=R; shift=6; score=0.424091; ------AGGyACA ; cor=; Ncor= a 0 0 0 0 0 0 800.0 5.0 24.0 6.0 791.0 2.0 780.0 c 0 0 0 0 0 0 13.0 12.0 49.0 436.0 19.0 827.0 8.0 g 0 0 0 0 0 0 31.0 828.0 771.0 4.0 28.0 7.0 54.0 t 0 0 0 0 0 0 5.0 4.0 5.0 403.0 11.0 13.0 7.0

MA0738.2_rc_shift6 (HIC2_rc)
; oligos_7nt_mkv2_m5 versus MA0738.2_rc (HIC2_rc); m=7/7; ncol2=6; w=0; offset=4; strand=R; shift=6; score=0.406495; ------KGGCAy- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 59.0 0.0 151.0 4891.0 367.0 0 c 0 0 0 0 0 0 0.0 0.0 14.0 4891.0 0.0 2285.0 0 g 0 0 0 0 0 0 3425.0 4891.0 4891.0 354.0 117.0 394.0 0 t 0 0 0 0 0 0 1466.0 435.0 23.0 494.0 0.0 2606.0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; ayTCCACTCCAct ; Alignment reference a 76 15 5 7 2 110 6 5 3 1 105 15 9 c 9 51 9 90 98 1 86 5 103 107 2 56 19 g 12 11 5 10 9 1 3 2 2 2 3 18 11 t 16 36 94 6 4 1 18 101 5 3 3 24 74

MA1645.2_shift3 (NKX2-2)
; oligos_6nt_mkv2_m1 versus MA1645.2 (NKX2-2); m=1/7; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.510302; ---CCACTCAA-- ; cor=; Ncor= a 0 0 0 2438.0 618.0 23748.0 478.0 490.0 397.0 21326.0 20003.0 0 0 c 0 0 0 20232.0 24341.0 463.0 24693.0 452.0 24058.0 2772.0 2104.0 0 0 g 0 0 0 2293.0 176.0 257.0 420.0 295.0 838.0 580.0 2266.0 0 0 t 0 0 0 1060.0 888.0 1555.0 432.0 24786.0 730.0 1345.0 1650.0 0 0

MA2003.2_shift3 (NKX2-4)
; oligos_6nt_mkv2_m1 versus MA2003.2 (NKX2-4); m=2/7; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.484171; ---cCACTTsA-- ; cor=; Ncor= a 0 0 0 385.0 14.0 1185.0 0.0 0.0 52.0 243.0 1185.0 0 0 c 0 0 0 1185.0 1185.0 127.0 1185.0 25.0 409.0 545.0 56.0 0 0 g 0 0 0 485.0 7.0 17.0 0.0 1.0 13.0 640.0 57.0 0 0 t 0 0 0 61.0 129.0 207.0 0.0 1185.0 1185.0 58.0 153.0 0 0

MA0673.2_shift3 (NKX2-8)
; oligos_6nt_mkv2_m1 versus MA0673.2 (NKX2-8); m=3/7; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.452907; ---sCACTYsA-- ; cor=; Ncor= a 0 0 0 1942.0 70.0 8562.0 14.0 0.0 23.0 1738.0 8562.0 0 0 c 0 0 0 3529.0 8562.0 595.0 8562.0 91.0 3197.0 2267.0 908.0 0 0 g 0 0 0 2843.0 0.0 0.0 0.0 0.0 0.0 4286.0 696.0 0 0 t 0 0 0 249.0 2155.0 516.0 110.0 8562.0 8562.0 271.0 2158.0 0 0

MA0809.3_shift3 (TEAD4)
; oligos_6nt_mkv2_m1 versus MA0809.3 (TEAD4); m=4/7; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.451855; ---ACATTCCA-- ; cor=; Ncor= a 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 c 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 g 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 t 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0

MA0130.1_shift1 (ZNF354C)
; oligos_6nt_mkv2_m1 versus MA0130.1 (ZNF354C); m=5/7; ncol2=6; w=0; offset=1; strand=D; shift=1; score=0.433739; -mTCCAC------ ; cor=; Ncor= a 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 c 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 g 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 t 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0

MA0479.2_shift0 (FOXH1)
; oligos_6nt_mkv2_m1 versus MA0479.2 (FOXH1); m=6/7; ncol2=8; w=0; offset=0; strand=D; shift=0; score=0.433736; AATMCACA----- ; cor=; Ncor= a 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 0 0 c 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 0 0 g 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0 0 0

MA0063.3_shift4 (NKX2-5)
; oligos_6nt_mkv2_m1 versus MA0063.3 (NKX2-5); m=7/7; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.423685; ----CACTCAA-- ; cor=; Ncor= a 0 0 0 0 96.0 5246.0 144.0 135.0 222.0 4819.0 4931.0 0 0 c 0 0 0 0 5002.0 48.0 5098.0 82.0 4319.0 120.0 165.0 0 0 g 0 0 0 0 24.0 76.0 49.0 61.0 62.0 217.0 98.0 0 0 t 0 0 0 0 322.0 74.0 153.0 5166.0 841.0 288.0 250.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift2 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift2 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=12; shift=2; ncol=14; --wwTATATATAww ; Alignment reference a 0 0 36 33 9 64 4 65 0 58 1 52 22 19 c 0 0 6 4 3 0 1 1 0 3 1 2 7 5 g 0 0 5 7 2 1 3 0 1 1 0 3 4 6 t 0 0 19 22 52 1 58 0 65 4 64 9 33 36

MA0108.3_shift6 (TBP)
; oligos_7nt_mkv2_m3 versus MA0108.3 (TBP); m=1/2; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.495954; ------TATAWAw- ; cor=; Ncor= a 0 0 0 0 0 0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 0 c 0 0 0 0 0 0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 0 g 0 0 0 0 0 0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 0 t 0 0 0 0 0 0 309.0 35.0 374.0 30.0 121.0 6.0 121.0 0

MA1974.2_rc_shift0 (ZNF211_rc)
; oligos_7nt_mkv2_m3 versus MA1974.2_rc (ZNF211_rc); m=2/2; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.411296; rTGGTATATr---- ; cor=; Ncor= a 412.0 41.0 38.0 8.0 7.0 776.0 2.0 769.0 3.0 393.0 0 0 0 0 c 44.0 20.0 5.0 7.0 6.0 3.0 7.0 5.0 13.0 83.0 0 0 0 0 g 262.0 21.0 741.0 776.0 7.0 11.0 4.0 17.0 21.0 275.0 0 0 0 0 t 76.0 712.0 10.0 3.0 774.0 4.0 781.0 3.0 757.0 43.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift0 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; wwwATATATAwww ; Alignment reference a 52 39 58 74 3 86 10 83 5 84 42 31 49 c 7 9 6 3 1 0 5 3 2 1 7 10 7 g 8 5 4 2 1 3 0 4 0 1 3 13 6 t 24 38 23 12 86 2 76 1 84 5 39 37 29

MA0108.3_shift6 (TBP)
; oligos_6nt_mkv2_m3 versus MA0108.3 (TBP); m=1/2; ncol2=7; w=0; offset=6; strand=D; shift=6; score=0.486128; ------TATAWAw ; cor=; Ncor= a 0 0 0 0 0 0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 c 0 0 0 0 0 0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 g 0 0 0 0 0 0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 t 0 0 0 0 0 0 309.0 35.0 374.0 30.0 121.0 6.0 121.0

MA1974.2_shift4 (ZNF211)
; oligos_6nt_mkv2_m3 versus MA1974.2 (ZNF211); m=2/2; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.464403; ----yATATACCA ; cor=; Ncor= a 0 0 0 0 43.0 757.0 3.0 781.0 4.0 774.0 3.0 10.0 712.0 c 0 0 0 0 275.0 21.0 17.0 4.0 11.0 7.0 776.0 741.0 21.0 g 0 0 0 0 83.0 13.0 5.0 7.0 3.0 6.0 7.0 5.0 20.0 t 0 0 0 0 393.0 3.0 769.0 2.0 776.0 7.0 8.0 38.0 41.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; AyTCCACTCCActc ; Alignment reference a 73 15 0 4 2 93 9 5 4 1 87 8 12 9 c 9 43 3 85 90 2 72 5 87 93 4 66 17 62 g 10 9 2 7 2 0 3 1 2 0 3 13 5 14 t 6 31 93 2 4 3 14 87 5 4 4 11 64 13

MA1645.2_shift3 (NKX2-2)
; oligos_7nt_mkv2_m1 versus MA1645.2 (NKX2-2); m=1/6; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.474014; ---CCACTCAA--- ; cor=; Ncor= a 0 0 0 2438.0 618.0 23748.0 478.0 490.0 397.0 21326.0 20003.0 0 0 0 c 0 0 0 20232.0 24341.0 463.0 24693.0 452.0 24058.0 2772.0 2104.0 0 0 0 g 0 0 0 2293.0 176.0 257.0 420.0 295.0 838.0 580.0 2266.0 0 0 0 t 0 0 0 1060.0 888.0 1555.0 432.0 24786.0 730.0 1345.0 1650.0 0 0 0

MA2003.2_shift3 (NKX2-4)
; oligos_7nt_mkv2_m1 versus MA2003.2 (NKX2-4); m=2/6; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.448667; ---cCACTTsA--- ; cor=; Ncor= a 0 0 0 385.0 14.0 1185.0 0.0 0.0 52.0 243.0 1185.0 0 0 0 c 0 0 0 1185.0 1185.0 127.0 1185.0 25.0 409.0 545.0 56.0 0 0 0 g 0 0 0 485.0 7.0 17.0 0.0 1.0 13.0 640.0 57.0 0 0 0 t 0 0 0 61.0 129.0 207.0 0.0 1185.0 1185.0 58.0 153.0 0 0 0

MA0673.2_shift3 (NKX2-8)
; oligos_7nt_mkv2_m1 versus MA0673.2 (NKX2-8); m=3/6; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.416956; ---sCACTYsA--- ; cor=; Ncor= a 0 0 0 1942.0 70.0 8562.0 14.0 0.0 23.0 1738.0 8562.0 0 0 0 c 0 0 0 3529.0 8562.0 595.0 8562.0 91.0 3197.0 2267.0 908.0 0 0 0 g 0 0 0 2843.0 0.0 0.0 0.0 0.0 0.0 4286.0 696.0 0 0 0 t 0 0 0 249.0 2155.0 516.0 110.0 8562.0 8562.0 271.0 2158.0 0 0 0

MA0479.2_shift5 (FOXH1)
; oligos_7nt_mkv2_m1 versus MA0479.2 (FOXH1); m=4/6; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.41532; -----AATMCACA- ; cor=; Ncor= a 0 0 0 0 0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 c 0 0 0 0 0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 g 0 0 0 0 0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 t 0 0 0 0 0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0

MA0809.3_shift3 (TEAD4)
; oligos_7nt_mkv2_m1 versus MA0809.3 (TEAD4); m=5/6; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.410905; ---ACATTCCA--- ; cor=; Ncor= a 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 0 c 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 0 g 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 0 t 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0 0

MA0130.1_shift1 (ZNF354C)
; oligos_7nt_mkv2_m1 versus MA0130.1 (ZNF354C); m=6/6; ncol2=6; w=0; offset=1; strand=D; shift=1; score=0.400438; -mTCCAC------- ; cor=; Ncor= a 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=13; shift=0; ncol=13; AwATATAATATAT ; Alignment reference a 38 14 49 2 46 5 41 41 3 44 5 36 8 c 1 3 0 1 0 1 1 1 1 1 6 1 6 g 2 1 1 0 3 0 1 0 1 3 2 7 2 t 9 32 0 47 1 44 7 8 45 2 37 6 34

MA0108.3_shift1 (TBP)
; oligos_7nt_mkv2_m4 versus MA0108.3 (TBP); m=1/2; ncol2=7; w=0; offset=1; strand=D; shift=1; score=0.469013; -TATAWAw----- ; cor=; Ncor= a 0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 0 0 0 0 0 c 0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 0 0 0 0 0 g 0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 0 0 0 0 0 t 0 309.0 35.0 374.0 30.0 121.0 6.0 121.0 0 0 0 0 0

MA0602.2_shift5 (Arid5a)
; oligos_7nt_mkv2_m4 versus MA0602.2 (Arid5a); m=2/2; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.45964; -----yAATATTg ; cor=; Ncor= a 0 0 0 0 0 16.0 85.0 96.0 6.0 93.0 2.0 4.0 23.0 c 0 0 0 0 0 32.0 3.0 0.0 0.0 1.0 1.0 9.0 3.0 g 0 0 0 0 0 3.0 7.0 1.0 1.0 1.0 1.0 4.0 52.0 t 0 0 0 0 0 48.0 5.0 2.0 93.0 6.0 96.0 83.0 22.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; gAaTGGAATGGAAtg ; Alignment reference a 12 50 44 5 0 4 64 49 1 0 7 63 53 12 7 c 5 5 3 2 7 1 1 2 3 7 1 1 0 9 10 g 44 8 15 1 57 61 1 10 3 52 59 2 8 3 41 t 6 4 5 59 3 1 1 6 60 8 0 1 6 43 9

MA0152.3_shift6 (Nfatc2)
; oligos_7nt_mkv2_m2 versus MA0152.3 (Nfatc2); m=1/4; ncol2=8; w=0; offset=6; strand=D; shift=6; score=0.459531; ------aATGGAAA- ; cor=; Ncor= a 0 0 0 0 0 0 2166.0 2583.0 170.0 78.0 33.0 3095.0 3140.0 2944.0 0 c 0 0 0 0 0 0 460.0 206.0 124.0 17.0 27.0 38.0 19.0 104.0 0 g 0 0 0 0 0 0 292.0 329.0 101.0 3118.0 3133.0 65.0 45.0 79.0 0 t 0 0 0 0 0 0 321.0 121.0 2844.0 26.0 46.0 41.0 35.0 112.0 0

MA0090.4_rc_shift2 (TEAD1_rc)
; oligos_7nt_mkv2_m2 versus MA0090.4_rc (TEAD1_rc); m=2/4; ncol2=9; w=0; offset=2; strand=R; shift=2; score=0.449666; --CTGGAATGT---- ; cor=; Ncor= a 0 0 7203.0 9428.0 1687.0 1332.0 63590.0 68517.0 700.0 1103.0 1941.0 0 0 0 0 c 0 0 47856.0 2051.0 374.0 765.0 1210.0 646.0 946.0 1923.0 9179.0 0 0 0 0 g 0 0 6215.0 1729.0 67635.0 66953.0 622.0 700.0 646.0 61276.0 1248.0 0 0 0 0 t 0 0 9124.0 57190.0 702.0 1348.0 4976.0 535.0 68106.0 6096.0 58030.0 0 0 0 0

MA0809.3_rc_shift3 (TEAD4_rc)
; oligos_7nt_mkv2_m2 versus MA0809.3_rc (TEAD4_rc); m=3/4; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.440988; ---TGGAATGT---- ; cor=; Ncor= a 0 0 0 11219.0 1494.0 2585.0 72137.0 74967.0 1502.0 1043.0 3144.0 0 0 0 0 c 0 0 0 1191.0 212.0 1580.0 2100.0 1025.0 569.0 3295.0 11265.0 0 0 0 0 g 0 0 0 3874.0 75066.0 72555.0 1176.0 1129.0 1218.0 66205.0 2414.0 0 0 0 0 t 0 0 0 61802.0 1314.0 1366.0 2673.0 965.0 74797.0 7543.0 61263.0 0 0 0 0

MA0808.1_rc_shift3 (TEAD3_rc)
; oligos_7nt_mkv2_m2 versus MA0808.1_rc (TEAD3_rc); m=4/4; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.421904; ---wGGAATGy---- ; cor=; Ncor= a 0 0 0 13663.0 4.0 0.0 16878.0 21444.0 0.0 0.0 1109.0 0 0 0 0 c 0 0 0 8654.0 0.0 0.0 969.0 0.0 0.0 441.0 8913.0 0 0 0 0 g 0 0 0 1039.0 21444.0 21444.0 23.0 0.0 0.0 18920.0 66.0 0 0 0 0 t 0 0 0 21444.0 0.0 0.0 4566.0 0.0 21444.0 2524.0 12530.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)				; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=10; shift=2; ncol=12; --vkCCCCGCsc ; Alignment reference a 0 0 13 8 1 0 1 0 1 2 7 9 c 0 0 15 9 48 47 49 50 0 45 23 19 g 0 0 15 19 1 3 0 0 49 0 13 12 t 0 0 7 14 0 0 0 0 0 3 7 10
MA1516.2_shift2 (KLF3)				; oligos_6nt_mkv2_m5 versus MA1516.2 (KLF3); m=1/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.715392; --grCCrCGCCC ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0
MA1513.2_shift4 (KLF15)				; oligos_6nt_mkv2_m5 versus MA1513.2 (KLF15); m=2/36; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.713017; ----cCCCGCCC ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0
MA1959.2_rc_shift4 (KLF7_rc)				; oligos_6nt_mkv2_m5 versus MA1959.2_rc (KLF7_rc); m=3/36; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.688255; ----CcMCGCCC ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0
MA0493.3_rc_shift4 (KLF1_rc)				; oligos_6nt_mkv2_m5 versus MA0493.3_rc (KLF1_rc); m=4/36; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.671723; ----CCmCrCCC ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0
MA0599.1_shift3 (KLF5)				; oligos_6nt_mkv2_m5 versus MA0599.1 (KLF5); m=5/36; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.664811; ---gCCMCrCCC ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0
MA0865.3_shift3 (E2F8)				; oligos_6nt_mkv2_m5 versus MA0865.3 (E2F8); m=6/36; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.663106; ---tTCCCGCcA ; cor=; Ncor= a 0 0 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 c 0 0 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 g 0 0 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 t 0 0 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_6nt_mkv2_m5 versus MA0742.2_rc (KLF12_rc); m=7/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.659565; ----CCCCGCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636
MA1961.2_rc_shift3 (PATZ1_rc)				; oligos_6nt_mkv2_m5 versus MA1961.2_rc (PATZ1_rc); m=8/36; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.655169; ---sCCCCkCCC ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0
MA0516.3_rc_shift4 (SP2_rc)				; oligos_6nt_mkv2_m5 versus MA0516.3_rc (SP2_rc); m=9/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score= 0.6516; ----cCCCGCCC ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_6nt_mkv2_m5 versus MA1511.2_rc (KLF10_rc); m=10/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.637253; ----CCMCGCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061
MA0685.2_rc_shift4 (SP4_rc)				; oligos_6nt_mkv2_m5 versus MA0685.2_rc (SP4_rc); m=11/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.630619; ----CyCCKCCC ; cor=; Ncor= a 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 c 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 g 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 t 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_6nt_mkv2_m5 versus MA0740.2_rc (KLF14_rc); m=12/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.628453; ----CCMCGCCC ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877
MA0079.5_rc_shift4 (SP1_rc)				; oligos_6nt_mkv2_m5 versus MA0079.5_rc (SP1_rc); m=13/36; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.624887; ----CyCCKCCC ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485
MA1515.2_shift4 (KLF2)				; oligos_6nt_mkv2_m5 versus MA1515.2 (KLF2); m=14/36; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.616438; ----CCmCrCCC ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0
MA1122.2_rc_shift3 (TFDP1_rc)				; oligos_6nt_mkv2_m5 versus MA1122.2_rc (TFDP1_rc); m=15/36; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.600453; ---TTCCCGCs- ; cor=; Ncor= a 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 c 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 g 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 t 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0
MA0039.5_shift4 (KLF4)				; oligos_6nt_mkv2_m5 versus MA0039.5 (KLF4); m=16/36; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.599939; ----CCCCACCC ; cor=; Ncor= a 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 c 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 g 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 t 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0
MA1522.2_shift4 (MAZ)				; oligos_6nt_mkv2_m5 versus MA1522.2 (MAZ); m=17/36; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.597707; ----CCCCTCCc ; cor=; Ncor= a 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 c 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 g 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 t 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0
MA0471.3_rc_shift3 (E2F6_rc)				; oligos_6nt_mkv2_m5 versus MA0471.3_rc (E2F6_rc); m=18/36; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.589644; ---TTCCCGCC- ; cor=; Ncor= a 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 c 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 g 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 t 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0
MA2328.1_shift0 (ZBED4)				; oligos_6nt_mkv2_m5 versus MA2328.1 (ZBED4); m=19/36; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.580836; CcCGCyCCGC-- ; cor=; Ncor= a 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 0 c 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 0 g 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 0 t 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0 0
MA0746.3_shift3 (SP3)				; oligos_6nt_mkv2_m5 versus MA0746.3 (SP3); m=20/36; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.57745; ---rCCACGCCC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0
MA0741.1_shift3 (KLF16)				; oligos_6nt_mkv2_m5 versus MA0741.1 (KLF16); m=21/36; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.545884; ---gmCMCgCCC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0
MA0736.1_shift0 (GLIS2)				; oligos_6nt_mkv2_m5 versus MA0736.1 (GLIS2); m=22/36; ncol2=14; w=-2; offset=-2; strand=D; shift=0; score=0.539729; kACCCCCCrCra ; cor=; Ncor= a 74.0 813.0 3.0 4.0 7.0 2.0 56.0 52.0 412.0 3.0 459.0 484.0 c 179.0 94.0 1072.0 1074.0 1074.0 1087.0 1061.0 1056.0 12.0 1080.0 36.0 16.0 g 929.0 130.0 3.0 0.0 0.0 0.0 0.0 1.0 915.0 28.0 909.0 234.0 t 439.0 1.0 5.0 1.0 14.0 0.0 4.0 99.0 50.0 69.0 64.0 228.0
MA1564.2_shift4 (SP9)				; oligos_6nt_mkv2_m5 versus MA1564.2 (SP9); m=23/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.519157; ----cCmCGCCC ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0
MA1630.3_rc_shift4 (ZNF281_rc)				; oligos_6nt_mkv2_m5 versus MA1630.3_rc (ZNF281_rc); m=24/36; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.511115; ----CCCCTCCC ; cor=; Ncor= a 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 c 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 g 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 t 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0
MA1653.2_shift4 (ZNF148)				; oligos_6nt_mkv2_m5 versus MA1653.2 (ZNF148); m=25/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.510337; ----CCCCTCCC ; cor=; Ncor= a 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 c 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 g 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 t 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0
MA0751.2_shift0 (ZIC4)				; oligos_6nt_mkv2_m5 versus MA0751.2 (ZIC4); m=26/36; ncol2=14; w=-2; offset=-2; strand=D; shift=0; score=0.506994; krCCCCCyGykG ; cor=; Ncor= a 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 c 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 g 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 t 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0
MA1578.2_shift2 (VEZF1)				; oligos_6nt_mkv2_m5 versus MA1578.2 (VEZF1); m=27/36; ncol2=6; w=0; offset=0; strand=D; shift=2; score=0.499391; --CCCCCC---- ; cor=; Ncor= a 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 c 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 g 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 t 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0
MA1584.2_shift0 (ZIC5)				; oligos_6nt_mkv2_m5 versus MA1584.2 (ZIC5); m=28/36; ncol2=15; w=-2; offset=-2; strand=D; shift=0; score=0.486701; gACCCCCCGCtG ; cor=; Ncor= a 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 c 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 g 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 t 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0
MA0753.3_shift4 (ZNF740)				; oligos_6nt_mkv2_m5 versus MA0753.3 (ZNF740); m=29/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.476787; ----CCCCCCCC ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0
MA1512.2_shift4 (KLF11)				; oligos_6nt_mkv2_m5 versus MA1512.2 (KLF11); m=30/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.469925; ----cCACGCCC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0
MA1615.2_rc_shift1 (Plagl1_rc)				; oligos_6nt_mkv2_m5 versus MA1615.2_rc (Plagl1_rc); m=31/36; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.453961; -TGGCCCCa--- ; cor=; Ncor= a 0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 c 0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 g 0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 t 0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0
MA0748.3_rc_shift6 (YY2_rc)				; oligos_6nt_mkv2_m5 versus MA0748.3_rc (YY2_rc); m=32/36; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.448364; ------CCGCCA ; cor=; Ncor= a 0 0 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 c 0 0 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 g 0 0 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 t 0 0 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0
MA0747.2_shift4 (SP8)				; oligos_6nt_mkv2_m5 versus MA0747.2 (SP8); m=33/36; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.435585; ----mCACgCCC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0
MA1117.2_shift1 (RELB)				; oligos_6nt_mkv2_m5 versus MA1117.2 (RELB); m=34/36; ncol2=7; w=-1; offset=-1; strand=D; shift=1; score=0.435245; -ATTCCCC---- ; cor=; Ncor= a 0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 0 0 0 0 c 0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 0 0 0 0 g 0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 0 0 0 0 t 0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 0 0 0 0
MA1650.2_shift6 (ZBTB14)				; oligos_6nt_mkv2_m5 versus MA1650.2 (ZBTB14); m=35/36; ncol2=8; w=0; offset=4; strand=D; shift=6; score=0.415242; ------CCGCGC ; cor=; Ncor= a 0 0 0 0 0 0 335.0 41.0 93.0 68.0 132.0 56.0 c 0 0 0 0 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 g 0 0 0 0 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 t 0 0 0 0 0 0 73.0 59.0 62.0 82.0 67.0 52.0
MA1548.2_shift0 (PLAGL2)				; oligos_6nt_mkv2_m5 versus MA1548.2 (PLAGL2); m=36/36; ncol2=8; w=-2; offset=-2; strand=D; shift=0; score=0.411786; GGGCCCCC---- ; cor=; Ncor= a 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 0 0 0 0 c 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 0 0 0 0 g 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 0 0 0 0 t 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift5 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=5; ncol=16; -----tccATTCCAyt ; Alignment reference a 0 0 0 0 0 9 15 15 66 1 1 1 0 66 14 10 c 0 0 0 0 0 13 34 29 0 0 0 66 58 0 17 11 g 0 0 0 0 0 8 7 14 2 0 0 0 7 2 10 7 t 0 0 0 0 0 38 12 10 0 67 67 1 3 0 27 40
MA0090.4_shift6 (TEAD1)				; oligos_6nt_mkv2_m2 versus MA0090.4 (TEAD1); m=1/10; ncol2=9; w=0; offset=1; strand=D; shift=6; score=0.697969; ------ACATTCCAG- ; cor=; Ncor= a 0 0 0 0 0 0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 0 c 0 0 0 0 0 0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 0 g 0 0 0 0 0 0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 0 t 0 0 0 0 0 0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 0
MA0809.3_shift6 (TEAD4)				; oligos_6nt_mkv2_m2 versus MA0809.3 (TEAD4); m=2/10; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.65352; ------ACATTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 c 0 0 0 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 g 0 0 0 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 t 0 0 0 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0
MA0808.1_shift6 (TEAD3)				; oligos_6nt_mkv2_m2 versus MA0808.1 (TEAD3); m=3/10; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.621761; ------rCATTCCw-- ; cor=; Ncor= a 0 0 0 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 c 0 0 0 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 g 0 0 0 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 t 0 0 0 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0
MA1121.2_shift6 (TEAD2)				; oligos_6nt_mkv2_m2 versus MA1121.2 (TEAD2); m=4/10; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.564255; ------ACATTCC--- ; cor=; Ncor= a 0 0 0 0 0 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 c 0 0 0 0 0 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 g 0 0 0 0 0 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 t 0 0 0 0 0 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0
MA0152.3_rc_shift8 (Nfatc2_rc)				; oligos_6nt_mkv2_m2 versus MA0152.3_rc (Nfatc2_rc); m=5/10; ncol2=8; w=0; offset=3; strand=R; shift=8; score=0.561848; --------TTTCCATt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 112.0 35.0 41.0 46.0 26.0 2844.0 121.0 321.0 c 0 0 0 0 0 0 0 0 79.0 45.0 65.0 3133.0 3118.0 101.0 329.0 292.0 g 0 0 0 0 0 0 0 0 104.0 19.0 38.0 27.0 17.0 124.0 206.0 460.0 t 0 0 0 0 0 0 0 0 2944.0 3140.0 3095.0 33.0 78.0 170.0 2583.0 2166.0
MA2333.1_shift7 (ZNF35)				; oligos_6nt_mkv2_m2 versus MA2333.1 (ZNF35); m=6/10; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.458928; -------AATTCTA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 13011.0 12763.0 836.0 719.0 1097.0 548.0 13931.0 0 0 c 0 0 0 0 0 0 0 834.0 690.0 655.0 762.0 12495.0 450.0 385.0 0 0 g 0 0 0 0 0 0 0 554.0 693.0 561.0 626.0 898.0 172.0 460.0 0 0 t 0 0 0 0 0 0 0 871.0 1124.0 13218.0 13163.0 780.0 14100.0 494.0 0 0
MA0625.3_rc_shift8 (NFATC3_rc)				; oligos_6nt_mkv2_m2 versus MA0625.3_rc (NFATC3_rc); m=7/10; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.430594; --------tTTCCr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 0 0 c 0 0 0 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 0 0 g 0 0 0 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 0 0 t 0 0 0 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0 0 0
MA0624.3_rc_shift8 (Nfatc1_rc)				; oligos_6nt_mkv2_m2 versus MA0624.3_rc (Nfatc1_rc); m=8/10; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.421509; --------TTTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0
MA1589.2_rc_shift0 (ZNF140_rc)				; oligos_6nt_mkv2_m2 versus MA1589.2_rc (ZNF140_rc); m=9/10; ncol2=19; w=-5; offset=-5; strand=R; shift=0; score=0.408696; acccAGCAATTCyrCT ; cor=; Ncor= a 1068.0 190.0 175.0 158.0 1422.0 183.0 5.0 1688.0 1718.0 3.0 8.0 16.0 118.0 919.0 16.0 10.0 c 248.0 1005.0 1168.0 1241.0 69.0 22.0 1806.0 48.0 27.0 12.0 7.0 1812.0 1194.0 36.0 1787.0 108.0 g 290.0 190.0 159.0 131.0 128.0 1606.0 10.0 33.0 87.0 9.0 2.0 1.0 6.0 875.0 11.0 14.0 t 234.0 455.0 338.0 310.0 221.0 29.0 19.0 71.0 8.0 1816.0 1823.0 11.0 522.0 10.0 26.0 1708.0
MA1624.2_shift9 (Stat5a)				; oligos_6nt_mkv2_m2 versus MA1624.2 (Stat5a); m=10/10; ncol2=9; w=0; offset=4; strand=D; shift=9; score=0.40103; ---------TTCCAAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 314.0 151.0 66.0 71.0 3191.0 3351.0 19.0 c 0 0 0 0 0 0 0 0 0 372.0 89.0 4381.0 4046.0 588.0 80.0 22.0 g 0 0 0 0 0 0 0 0 0 207.0 144.0 26.0 28.0 137.0 980.0 4441.0 t 0 0 0 0 0 0 0 0 0 3621.0 4130.0 41.0 369.0 598.0 103.0 32.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=10; shift=2; ncol=12; --msCTAGGCra ; Alignment reference a 0 0 16 10 0 0 46 1 2 1 16 18 c 0 0 18 14 46 0 2 3 1 45 10 11 g 0 0 8 14 2 0 0 42 41 0 12 10 t 0 0 6 10 0 48 0 2 4 2 10 9
MA1979.2_shift1 (ZNF416)				; oligos_6nt_mkv2_m4 versus MA1979.2 (ZNF416); m=1/4; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.577801; -TaTCTGGGCa- ; cor=; Ncor= a 0 47.0 197.0 48.0 1.0 2.0 1.0 2.0 0.0 4.0 212.0 0 c 0 32.0 25.0 28.0 334.0 6.0 7.0 5.0 1.0 320.0 38.0 0 g 0 26.0 77.0 15.0 7.0 1.0 335.0 335.0 341.0 3.0 29.0 0 t 0 240.0 46.0 254.0 3.0 336.0 2.0 3.0 3.0 18.0 66.0 0
MA1153.2_rc_shift4 (Smad4_rc)				; oligos_6nt_mkv2_m4 versus MA1153.2_rc (Smad4_rc); m=2/4; ncol2=7; w=0; offset=2; strand=R; shift=4; score=0.51455; ----CyAGACr- ; cor=; Ncor= a 0 0 0 0 0.0 0.0 1000.0 0.0 1000.0 0.0 581.0 0 c 0 0 0 0 1000.0 404.0 0.0 0.0 0.0 1000.0 81.0 0 g 0 0 0 0 0.0 0.0 0.0 1000.0 0.0 0.0 250.0 0 t 0 0 0 0 0.0 596.0 0.0 0.0 0.0 0.0 88.0 0
MA0161.3_shift4 (NFIC)				; oligos_6nt_mkv2_m4 versus MA0161.3 (NFIC); m=3/4; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.512735; ----CTTGGCA- ; cor=; Ncor= a 0 0 0 0 412.0 154.0 352.0 310.0 223.0 264.0 10158.0 0 c 0 0 0 0 10542.0 303.0 333.0 129.0 121.0 10725.0 397.0 0 g 0 0 0 0 329.0 369.0 177.0 11087.0 10973.0 88.0 478.0 0 t 0 0 0 0 324.0 10781.0 10745.0 81.0 290.0 530.0 574.0 0
MA1724.2_rc_shift0 (Rfx6_rc)				; oligos_6nt_mkv2_m4 versus MA1724.2_rc (Rfx6_rc); m=4/4; ncol2=9; w=-2; offset=-2; strand=R; shift=0; score=0.456973; GTTGCTAGG--- ; cor=; Ncor= a 635.0 213.0 216.0 339.0 54.0 66.0 6994.0 810.0 272.0 0 0 0 c 552.0 339.0 132.0 359.0 8215.0 1205.0 146.0 242.0 232.0 0 0 0 g 6811.0 258.0 117.0 7474.0 102.0 64.0 1066.0 6405.0 7859.0 0 0 0 t 552.0 7740.0 8085.0 378.0 179.0 7215.0 344.0 1093.0 187.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=11; shift=2; ncol=13; --ryCTAGGCArv ; Alignment reference a 0 0 20 15 2 2 62 4 1 2 59 19 21 c 0 0 16 21 65 1 3 0 3 61 6 18 20 g 0 0 20 17 2 1 4 67 68 4 4 20 21 t 0 0 17 20 4 69 4 2 1 6 4 16 11
MA1979.2_shift1 (ZNF416)				; oligos_7nt_mkv2_m5 versus MA1979.2 (ZNF416); m=1/7; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.57217; -TaTCTGGGCa-- ; cor=; Ncor= a 0 47.0 197.0 48.0 1.0 2.0 1.0 2.0 0.0 4.0 212.0 0 0 c 0 32.0 25.0 28.0 334.0 6.0 7.0 5.0 1.0 320.0 38.0 0 0 g 0 26.0 77.0 15.0 7.0 1.0 335.0 335.0 341.0 3.0 29.0 0 0 t 0 240.0 46.0 254.0 3.0 336.0 2.0 3.0 3.0 18.0 66.0 0 0
MA0161.3_shift4 (NFIC)				; oligos_7nt_mkv2_m5 versus MA0161.3 (NFIC); m=2/7; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.521491; ----CTTGGCA-- ; cor=; Ncor= a 0 0 0 0 412.0 154.0 352.0 310.0 223.0 264.0 10158.0 0 0 c 0 0 0 0 10542.0 303.0 333.0 129.0 121.0 10725.0 397.0 0 0 g 0 0 0 0 329.0 369.0 177.0 11087.0 10973.0 88.0 478.0 0 0 t 0 0 0 0 324.0 10781.0 10745.0 81.0 290.0 530.0 574.0 0 0
MA1153.2_rc_shift4 (Smad4_rc)				; oligos_7nt_mkv2_m5 versus MA1153.2_rc (Smad4_rc); m=3/7; ncol2=7; w=0; offset=2; strand=R; shift=4; score=0.452493; ----CyAGACr-- ; cor=; Ncor= a 0 0 0 0 0.0 0.0 1000.0 0.0 1000.0 0.0 581.0 0 0 c 0 0 0 0 1000.0 404.0 0.0 0.0 0.0 1000.0 81.0 0 0 g 0 0 0 0 0.0 0.0 0.0 1000.0 0.0 0.0 250.0 0 0 t 0 0 0 0 0.0 596.0 0.0 0.0 0.0 0.0 88.0 0 0
MA1724.2_rc_shift0 (Rfx6_rc)				; oligos_7nt_mkv2_m5 versus MA1724.2_rc (Rfx6_rc); m=4/7; ncol2=9; w=-2; offset=-2; strand=R; shift=0; score=0.434298; GTTGCTAGG---- ; cor=; Ncor= a 635.0 213.0 216.0 339.0 54.0 66.0 6994.0 810.0 272.0 0 0 0 0 c 552.0 339.0 132.0 359.0 8215.0 1205.0 146.0 242.0 232.0 0 0 0 0 g 6811.0 258.0 117.0 7474.0 102.0 64.0 1066.0 6405.0 7859.0 0 0 0 0 t 552.0 7740.0 8085.0 378.0 179.0 7215.0 344.0 1093.0 187.0 0 0 0 0
MA0670.2_rc_shift5 (NFIA_rc)				; oligos_7nt_mkv2_m5 versus MA0670.2_rc (NFIA_rc); m=5/7; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.429283; -----TTGGCA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 95496.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 98253.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 93394.0 93597.0 0.0 0.0 0 0 t 0 0 0 0 0 89418.0 89071.0 0.0 0.0 0.0 0.0 0 0
MA1730.2_rc_shift6 (ZNF708_rc)				; oligos_7nt_mkv2_m5 versus MA1730.2_rc (ZNF708_rc); m=6/7; ncol2=9; w=0; offset=4; strand=R; shift=6; score=0.424091; ------AGGyACA ; cor=; Ncor= a 0 0 0 0 0 0 800.0 5.0 24.0 6.0 791.0 2.0 780.0 c 0 0 0 0 0 0 13.0 12.0 49.0 436.0 19.0 827.0 8.0 g 0 0 0 0 0 0 31.0 828.0 771.0 4.0 28.0 7.0 54.0 t 0 0 0 0 0 0 5.0 4.0 5.0 403.0 11.0 13.0 7.0
MA0738.2_rc_shift6 (HIC2_rc)				; oligos_7nt_mkv2_m5 versus MA0738.2_rc (HIC2_rc); m=7/7; ncol2=6; w=0; offset=4; strand=R; shift=6; score=0.406495; ------KGGCAy- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 59.0 0.0 151.0 4891.0 367.0 0 c 0 0 0 0 0 0 0.0 0.0 14.0 4891.0 0.0 2285.0 0 g 0 0 0 0 0 0 3425.0 4891.0 4891.0 354.0 117.0 394.0 0 t 0 0 0 0 0 0 1466.0 435.0 23.0 494.0 0.0 2606.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; ayTCCACTCCAct ; Alignment reference a 76 15 5 7 2 110 6 5 3 1 105 15 9 c 9 51 9 90 98 1 86 5 103 107 2 56 19 g 12 11 5 10 9 1 3 2 2 2 3 18 11 t 16 36 94 6 4 1 18 101 5 3 3 24 74
MA1645.2_shift3 (NKX2-2)				; oligos_6nt_mkv2_m1 versus MA1645.2 (NKX2-2); m=1/7; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.510302; ---CCACTCAA-- ; cor=; Ncor= a 0 0 0 2438.0 618.0 23748.0 478.0 490.0 397.0 21326.0 20003.0 0 0 c 0 0 0 20232.0 24341.0 463.0 24693.0 452.0 24058.0 2772.0 2104.0 0 0 g 0 0 0 2293.0 176.0 257.0 420.0 295.0 838.0 580.0 2266.0 0 0 t 0 0 0 1060.0 888.0 1555.0 432.0 24786.0 730.0 1345.0 1650.0 0 0
MA2003.2_shift3 (NKX2-4)				; oligos_6nt_mkv2_m1 versus MA2003.2 (NKX2-4); m=2/7; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.484171; ---cCACTTsA-- ; cor=; Ncor= a 0 0 0 385.0 14.0 1185.0 0.0 0.0 52.0 243.0 1185.0 0 0 c 0 0 0 1185.0 1185.0 127.0 1185.0 25.0 409.0 545.0 56.0 0 0 g 0 0 0 485.0 7.0 17.0 0.0 1.0 13.0 640.0 57.0 0 0 t 0 0 0 61.0 129.0 207.0 0.0 1185.0 1185.0 58.0 153.0 0 0
MA0673.2_shift3 (NKX2-8)				; oligos_6nt_mkv2_m1 versus MA0673.2 (NKX2-8); m=3/7; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.452907; ---sCACTYsA-- ; cor=; Ncor= a 0 0 0 1942.0 70.0 8562.0 14.0 0.0 23.0 1738.0 8562.0 0 0 c 0 0 0 3529.0 8562.0 595.0 8562.0 91.0 3197.0 2267.0 908.0 0 0 g 0 0 0 2843.0 0.0 0.0 0.0 0.0 0.0 4286.0 696.0 0 0 t 0 0 0 249.0 2155.0 516.0 110.0 8562.0 8562.0 271.0 2158.0 0 0
MA0809.3_shift3 (TEAD4)				; oligos_6nt_mkv2_m1 versus MA0809.3 (TEAD4); m=4/7; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.451855; ---ACATTCCA-- ; cor=; Ncor= a 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 c 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 g 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 t 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0
MA0130.1_shift1 (ZNF354C)				; oligos_6nt_mkv2_m1 versus MA0130.1 (ZNF354C); m=5/7; ncol2=6; w=0; offset=1; strand=D; shift=1; score=0.433739; -mTCCAC------ ; cor=; Ncor= a 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 c 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 g 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 t 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0
MA0479.2_shift0 (FOXH1)				; oligos_6nt_mkv2_m1 versus MA0479.2 (FOXH1); m=6/7; ncol2=8; w=0; offset=0; strand=D; shift=0; score=0.433736; AATMCACA----- ; cor=; Ncor= a 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 0 0 0 c 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 0 0 0 g 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0 0 0 0
MA0063.3_shift4 (NKX2-5)				; oligos_6nt_mkv2_m1 versus MA0063.3 (NKX2-5); m=7/7; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.423685; ----CACTCAA-- ; cor=; Ncor= a 0 0 0 0 96.0 5246.0 144.0 135.0 222.0 4819.0 4931.0 0 0 c 0 0 0 0 5002.0 48.0 5098.0 82.0 4319.0 120.0 165.0 0 0 g 0 0 0 0 24.0 76.0 49.0 61.0 62.0 217.0 98.0 0 0 t 0 0 0 0 322.0 74.0 153.0 5166.0 841.0 288.0 250.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; AyTCCACTCCActc ; Alignment reference a 73 15 0 4 2 93 9 5 4 1 87 8 12 9 c 9 43 3 85 90 2 72 5 87 93 4 66 17 62 g 10 9 2 7 2 0 3 1 2 0 3 13 5 14 t 6 31 93 2 4 3 14 87 5 4 4 11 64 13
MA1645.2_shift3 (NKX2-2)				; oligos_7nt_mkv2_m1 versus MA1645.2 (NKX2-2); m=1/6; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.474014; ---CCACTCAA--- ; cor=; Ncor= a 0 0 0 2438.0 618.0 23748.0 478.0 490.0 397.0 21326.0 20003.0 0 0 0 c 0 0 0 20232.0 24341.0 463.0 24693.0 452.0 24058.0 2772.0 2104.0 0 0 0 g 0 0 0 2293.0 176.0 257.0 420.0 295.0 838.0 580.0 2266.0 0 0 0 t 0 0 0 1060.0 888.0 1555.0 432.0 24786.0 730.0 1345.0 1650.0 0 0 0
MA2003.2_shift3 (NKX2-4)				; oligos_7nt_mkv2_m1 versus MA2003.2 (NKX2-4); m=2/6; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.448667; ---cCACTTsA--- ; cor=; Ncor= a 0 0 0 385.0 14.0 1185.0 0.0 0.0 52.0 243.0 1185.0 0 0 0 c 0 0 0 1185.0 1185.0 127.0 1185.0 25.0 409.0 545.0 56.0 0 0 0 g 0 0 0 485.0 7.0 17.0 0.0 1.0 13.0 640.0 57.0 0 0 0 t 0 0 0 61.0 129.0 207.0 0.0 1185.0 1185.0 58.0 153.0 0 0 0
MA0673.2_shift3 (NKX2-8)				; oligos_7nt_mkv2_m1 versus MA0673.2 (NKX2-8); m=3/6; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.416956; ---sCACTYsA--- ; cor=; Ncor= a 0 0 0 1942.0 70.0 8562.0 14.0 0.0 23.0 1738.0 8562.0 0 0 0 c 0 0 0 3529.0 8562.0 595.0 8562.0 91.0 3197.0 2267.0 908.0 0 0 0 g 0 0 0 2843.0 0.0 0.0 0.0 0.0 0.0 4286.0 696.0 0 0 0 t 0 0 0 249.0 2155.0 516.0 110.0 8562.0 8562.0 271.0 2158.0 0 0 0
MA0479.2_shift5 (FOXH1)				; oligos_7nt_mkv2_m1 versus MA0479.2 (FOXH1); m=4/6; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.41532; -----AATMCACA- ; cor=; Ncor= a 0 0 0 0 0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 c 0 0 0 0 0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 g 0 0 0 0 0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 t 0 0 0 0 0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0
MA0809.3_shift3 (TEAD4)				; oligos_7nt_mkv2_m1 versus MA0809.3 (TEAD4); m=5/6; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.410905; ---ACATTCCA--- ; cor=; Ncor= a 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 0 c 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 0 g 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 0 t 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0 0
MA0130.1_shift1 (ZNF354C)				; oligos_7nt_mkv2_m1 versus MA0130.1 (ZNF354C); m=6/6; ncol2=6; w=0; offset=1; strand=D; shift=1; score=0.400438; -mTCCAC------- ; cor=; Ncor= a 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; gAaTGGAATGGAAtg ; Alignment reference a 12 50 44 5 0 4 64 49 1 0 7 63 53 12 7 c 5 5 3 2 7 1 1 2 3 7 1 1 0 9 10 g 44 8 15 1 57 61 1 10 3 52 59 2 8 3 41 t 6 4 5 59 3 1 1 6 60 8 0 1 6 43 9
MA0152.3_shift6 (Nfatc2)				; oligos_7nt_mkv2_m2 versus MA0152.3 (Nfatc2); m=1/4; ncol2=8; w=0; offset=6; strand=D; shift=6; score=0.459531; ------aATGGAAA- ; cor=; Ncor= a 0 0 0 0 0 0 2166.0 2583.0 170.0 78.0 33.0 3095.0 3140.0 2944.0 0 c 0 0 0 0 0 0 460.0 206.0 124.0 17.0 27.0 38.0 19.0 104.0 0 g 0 0 0 0 0 0 292.0 329.0 101.0 3118.0 3133.0 65.0 45.0 79.0 0 t 0 0 0 0 0 0 321.0 121.0 2844.0 26.0 46.0 41.0 35.0 112.0 0
MA0090.4_rc_shift2 (TEAD1_rc)				; oligos_7nt_mkv2_m2 versus MA0090.4_rc (TEAD1_rc); m=2/4; ncol2=9; w=0; offset=2; strand=R; shift=2; score=0.449666; --CTGGAATGT---- ; cor=; Ncor= a 0 0 7203.0 9428.0 1687.0 1332.0 63590.0 68517.0 700.0 1103.0 1941.0 0 0 0 0 c 0 0 47856.0 2051.0 374.0 765.0 1210.0 646.0 946.0 1923.0 9179.0 0 0 0 0 g 0 0 6215.0 1729.0 67635.0 66953.0 622.0 700.0 646.0 61276.0 1248.0 0 0 0 0 t 0 0 9124.0 57190.0 702.0 1348.0 4976.0 535.0 68106.0 6096.0 58030.0 0 0 0 0
MA0809.3_rc_shift3 (TEAD4_rc)				; oligos_7nt_mkv2_m2 versus MA0809.3_rc (TEAD4_rc); m=3/4; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.440988; ---TGGAATGT---- ; cor=; Ncor= a 0 0 0 11219.0 1494.0 2585.0 72137.0 74967.0 1502.0 1043.0 3144.0 0 0 0 0 c 0 0 0 1191.0 212.0 1580.0 2100.0 1025.0 569.0 3295.0 11265.0 0 0 0 0 g 0 0 0 3874.0 75066.0 72555.0 1176.0 1129.0 1218.0 66205.0 2414.0 0 0 0 0 t 0 0 0 61802.0 1314.0 1366.0 2673.0 965.0 74797.0 7543.0 61263.0 0 0 0 0
MA0808.1_rc_shift3 (TEAD3_rc)				; oligos_7nt_mkv2_m2 versus MA0808.1_rc (TEAD3_rc); m=4/4; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.421904; ---wGGAATGy---- ; cor=; Ncor= a 0 0 0 13663.0 4.0 0.0 16878.0 21444.0 0.0 0.0 1109.0 0 0 0 0 c 0 0 0 8654.0 0.0 0.0 969.0 0.0 0.0 441.0 8913.0 0 0 0 0 g 0 0 0 1039.0 21444.0 21444.0 23.0 0.0 0.0 18920.0 66.0 0 0 0 0 t 0 0 0 21444.0 0.0 0.0 4566.0 0.0 21444.0 2524.0 12530.0 0 0 0 0