peak-motifs Exc_L6_CT_control_MDD

Motif discovery

Motif 1 oligos_6nt_mkv2_m1

k-mer sig=2.77; evalue=0.0017

ayTCCACTCCAcT

AGTGGAGTGGART

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ayTCCACTCCAcT

NKX2-2 MA1645.2 D 8 0.6154 0.829 0.510 NA NA

NKX2-4 MA2003.2 D 8 0.6154 0.787 0.484 NA NA

NKX2-8 MA0673.2 D 8 0.6154 0.736 0.453 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (20.00%)
Max nb of predicted sites per peak: 82
(chrY:26670263-26671645)
Mean nb of predicted sites per peak: 14.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv2_m2

k-mer sig=2.60; evalue=0.0025

tccATTCCAtt

AATGGAATGGA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tccATTCCAtt

TEAD1 MA0090.4 D 9 0.8182 0.853 0.698 NA NA

TEAD4 MA0809.3 D 8 0.7273 0.899 0.654 NA NA

TEAD3 MA0808.1 D 8 0.7273 0.855 0.622 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (26.67%)
Max nb of predicted sites per peak: 34
(chrY:26670263-26671645)
Mean nb of predicted sites per peak: 5.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv2_m3

k-mer sig=1.59; evalue=0.026

wwwATATATAwww

WWWTATATATWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwwATATATAwww

TBP MA0108.3 D 7 0.5385 0.903 0.486 NA NA

ZNF211 MA1974.2 D 9 0.6429 0.722 0.464 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (26.67%)
Max nb of predicted sites per peak: 69
(chr21:10271568-10272818)
Mean nb of predicted sites per peak: 10.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv2_m4

k-mer sig=1.06; evalue=0.087

msCTAGGCaa

TTGCCTAGSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msCTAGGCaa

ZNF416 MA1979.2 D 9 0.8182 0.706 0.578 NA NA

Smad4 MA1153.2 R 7 0.7000 0.735 0.515 NA NA

NFIC MA0161.3 D 7 0.7000 0.732 0.513 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 15 (50.00%)
Max nb of predicted sites per peak: 3
(chrY:8672869-8674944)
Mean nb of predicted sites per peak: 1.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv2_m5

k-mer sig=0.67; evalue=0.21

vkCCCCGCsc

GSGCGGGGMB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vkCCCCGCsc

KLF3 MA1516.2 D 10 1.0000 0.715 0.715 NA NA

KLF15 MA1513.2 D 8 0.8000 0.891 0.713 NA NA

KLF7 MA1959.2 R 8 0.8000 0.860 0.688 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (43.33%)
Max nb of predicted sites per peak: 5
(chrY:12419734-12422003)
Mean nb of predicted sites per peak: 2.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv2_m1

k-mer sig=6.06; evalue=8.7e-07

AyTCCACTCCActc

GAGTGGAGTGGART

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AyTCCACTCCActc

NKX2-2 MA1645.2 D 8 0.5714 0.830 0.474 NA NA

NKX2-4 MA2003.2 D 8 0.5714 0.785 0.449 NA NA

NKX2-8 MA0673.2 D 8 0.5714 0.730 0.417 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (23.33%)
Max nb of predicted sites per peak: 82
(chrY:26670263-26671645)
Mean nb of predicted sites per peak: 12.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv2_m2

k-mer sig=3.33; evalue=0.00047

gAaTGGAATGGAAtg

CATTCCATTCCATTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gAaTGGAATGGAAtg

Nfatc2 MA0152.3 D 8 0.5333 0.862 0.460 NA NA

TEAD1 MA0090.4 R 9 0.6000 0.749 0.450 NA NA

TEAD4 MA0809.3 R 8 0.5333 0.827 0.441 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2 (6.67%)
Max nb of predicted sites per peak: 92
(chrY:26670263-26671645)
Mean nb of predicted sites per peak: 46.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv2_m3

k-mer sig=2.18; evalue=0.0066

wwTATATATAww

WWTATATATAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATATATAww

TBP MA0108.3 D 7 0.5833 0.850 0.496 NA NA

ZNF211 MA1974.2 R 8 0.5714 0.720 0.411 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5 (16.67%)
Max nb of predicted sites per peak: 51
(chr21:10271568-10272818)
Mean nb of predicted sites per peak: 12.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv2_m4

k-mer sig=1.46; evalue=0.035

AwATATAATATAT

ATATATTATATWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AwATATAATATAT

TBP MA0108.3 D 7 0.5385 0.871 0.469 NA NA

Arid5a MA0602.2 D 8 0.6154 0.747 0.460 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (23.33%)
Max nb of predicted sites per peak: 74
(chr21:10271568-10272818)
Mean nb of predicted sites per peak: 12.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv2_m5

k-mer sig=0.85; evalue=0.14

ryCTAGGCArv

BYTGCCTAGRY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryCTAGGCArv

ZNF416 MA1979.2 D 9 0.7500 0.763 0.572 NA NA

NFIC MA0161.3 D 7 0.6364 0.819 0.521 NA NA

Smad4 MA1153.2 R 7 0.6364 0.711 0.452 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (33.33%)
Max nb of predicted sites per peak: 2
(chrY:8672869-8674944)
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Exc_L6_CT_control_MDD_up (16/05/2025 17:54)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwwATATATAwww

TBP MA0108.3 D 7 0.5385 0.903 0.486 NA NA

ZNF211 MA1974.2 D 9 0.6429 0.722 0.464 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATATATAww

TBP MA0108.3 D 7 0.5833 0.850 0.496 NA NA

ZNF211 MA1974.2 R 8 0.5714 0.720 0.411 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AwATATAATATAT

TBP MA0108.3 D 7 0.5385 0.871 0.469 NA NA

Arid5a MA0602.2 D 8 0.6154 0.747 0.460 NA NA

Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: Exc_L6_CT_control_MDD_up (16/05/2025 17:54)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwwATATATAwww TBP MA0108.3 D 7 0.5385 0.903 0.486 NA NA ZNF211 MA1974.2 D 9 0.6429 0.722 0.464 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwTATATATAww TBP MA0108.3 D 7 0.5833 0.850 0.496 NA NA ZNF211 MA1974.2 R 8 0.5714 0.720 0.411 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor AwATATAATATAT TBP MA0108.3 D 7 0.5385 0.871 0.469 NA NA Arid5a MA0602.2 D 8 0.6154 0.747 0.460 NA NA Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwwATATATAwww

TBP MA0108.3 D 7 0.5385 0.903 0.486 NA NA

ZNF211 MA1974.2 D 9 0.6429 0.722 0.464 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATATATAww

TBP MA0108.3 D 7 0.5833 0.850 0.496 NA NA

ZNF211 MA1974.2 R 8 0.5714 0.720 0.411 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor AwATATAATATAT

TBP MA0108.3 D 7 0.5385 0.871 0.469 NA NA

Arid5a MA0602.2 D 8 0.6154 0.747 0.460 NA NA

Total matches= 2