/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2.tf
		file1	1	13	18
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m2 MA0093.4 oligos_6nt_mkv1_m2 USF1 0.934 0.719 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_6nt_mkv1_m2 MA0620.4 oligos_6nt_mkv1_m2 MITF 0.874 0.672 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_6nt_mkv1_m2 MA0831.3 oligos_6nt_mkv1_m2 TFE3 0.828 0.637 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_6nt_mkv1_m2 MA0526.5 oligos_6nt_mkv1_m2 USF2 0.817 0.628 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_6nt_mkv1_m2 MA0636.1 oligos_6nt_mkv1_m2 BHLHE41 0.800 0.615 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_6nt_mkv1_m2 MA0828.3 oligos_6nt_mkv1_m2 SREBF2 0.783 0.603 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_6nt_mkv1_m2 MA0663.1 oligos_6nt_mkv1_m2 MLX 0.772 0.594 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_6nt_mkv1_m2 MA0829.3 oligos_6nt_mkv1_m2 SREBF1 0.757 0.582 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_6nt_mkv1_m2 MA1570.1 oligos_6nt_mkv1_m2 TFAP4 0.715 0.550 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_6nt_mkv1_m2 MA0692.2 oligos_6nt_mkv1_m2 TFEB 0.854 0.525 13 8 8 13 0.6154 0.6154 1.0000 R 2
oligos_6nt_mkv1_m2 MA1939.2 oligos_6nt_mkv1_m2 ERF::SREBF2 0.717 0.506 13 16 12 17 0.7059 0.9231 0.7500 D -4
oligos_6nt_mkv1_m2 MA0871.3 oligos_6nt_mkv1_m2 TFEC 0.816 0.502 13 8 8 13 0.6154 0.6154 1.0000 R 2
oligos_6nt_mkv1_m2 MA0603.2 oligos_6nt_mkv1_m2 Arntl 0.787 0.484 13 8 8 13 0.6154 0.6154 1.0000 D 2
oligos_6nt_mkv1_m2 MA1464.2 oligos_6nt_mkv1_m2 ARNT2 0.787 0.484 13 8 8 13 0.6154 0.6154 1.0000 D 2
oligos_6nt_mkv1_m2 MA0664.2 oligos_6nt_mkv1_m2 MLXIPL 0.783 0.482 13 8 8 13 0.6154 0.6154 1.0000 R 4
oligos_6nt_mkv1_m2 MA0018.5 oligos_6nt_mkv1_m2 CREB1 0.753 0.463 13 8 8 13 0.6154 0.6154 1.0000 D 3
oligos_6nt_mkv1_m2 MA0464.3 oligos_6nt_mkv1_m2 BHLHE40 0.724 0.446 13 8 8 13 0.6154 0.6154 1.0000 D 3
oligos_6nt_mkv1_m2 MA1108.3 oligos_6nt_mkv1_m2 MXI1 0.953 0.440 13 6 6 13 0.4615 0.4615 1.0000 R 4
oligos_6nt_mkv1_m2 MA0775.2 oligos_6nt_mkv1_m2 MEIS3 0.810 0.436 13 7 7 13 0.5385 0.5385 1.0000 R 0 
 Host name	rsat
 Job started	2025-05-16.175545
 Job done	2025-05-16.175558
 Seconds	2.43
	user	2.43
	system	0.54
	cuser	9.5
;	csystem	0.74