One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m2_shift4 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m2_shift4 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=13; shift=4; ncol=17; ----mtGtCATRTsAyv ; Alignment reference a 0 0 0 0 8 2 2 3 0 17 0 5 2 1 15 0 7 c 0 0 0 0 5 4 1 3 13 1 4 0 1 5 0 7 5 g 0 0 0 0 2 2 13 0 4 0 0 13 0 11 2 3 6 t 0 0 0 0 3 10 2 12 1 0 14 0 15 1 1 8 0

MA0093.4_shift6 (USF1)
; oligos_6nt_mkv1_m2 versus MA0093.4 (USF1); m=1/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.718843; ------GTCATGTGAC- ; cor=; Ncor= a 0 0 0 0 0 0 7574.0 3841.0 533.0 53654.0 418.0 3453.0 448.0 403.0 45587.0 1845.0 0 c 0 0 0 0 0 0 3030.0 9543.0 53536.0 654.0 13185.0 1387.0 264.0 817.0 3045.0 41450.0 0 g 0 0 0 0 0 0 43094.0 3912.0 766.0 477.0 3666.0 50076.0 601.0 53634.0 4679.0 3018.0 0 t 0 0 0 0 0 0 1636.0 38038.0 499.0 549.0 38065.0 418.0 54021.0 480.0 2023.0 9021.0 0

MA0620.4_rc_shift6 (MITF_rc)
; oligos_6nt_mkv1_m2 versus MA0620.4_rc (MITF_rc); m=2/19; ncol2=10; w=0; offset=2; strand=R; shift=6; score=0.672009; ------rTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 19439.0 2414.0 237.0 61548.0 313.0 14302.0 760.0 208.0 53123.0 2120.0 0 c 0 0 0 0 0 0 5204.0 4999.0 62666.0 751.0 47768.0 1140.0 469.0 416.0 2991.0 36761.0 0 g 0 0 0 0 0 0 36765.0 2990.0 416.0 469.0 1140.0 47772.0 751.0 62666.0 4997.0 5205.0 0 t 0 0 0 0 0 0 2119.0 53124.0 208.0 759.0 14306.0 313.0 61547.0 237.0 2416.0 19441.0 0

MA0831.3_rc_shift6 (TFE3_rc)
; oligos_6nt_mkv1_m2 versus MA0831.3_rc (TFE3_rc); m=3/19; ncol2=10; w=0; offset=2; strand=R; shift=6; score=0.636612; ------rTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 6291.0 594.0 0.0 19939.0 0.0 774.0 34.0 0.0 19939.0 142.0 0 c 0 0 0 0 0 0 1050.0 1725.0 19939.0 16.0 19939.0 6.0 6.0 4.0 1295.0 13651.0 0 g 0 0 0 0 0 0 13648.0 1312.0 5.0 0.0 6.0 19939.0 10.0 19939.0 1743.0 1050.0 0 t 0 0 0 0 0 0 124.0 19939.0 0.0 39.0 782.0 0.0 19939.0 0.0 591.0 6289.0 0

MA0526.5_shift6 (USF2)
; oligos_6nt_mkv1_m2 versus MA0526.5 (USF2); m=4/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.628356; ------rTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 7043.0 450.0 0.0 18731.0 0.0 41.0 10.0 15.0 16175.0 33.0 0 c 0 0 0 0 0 0 583.0 2548.0 18731.0 6.0 18731.0 0.0 4.0 9.0 162.0 11694.0 0 g 0 0 0 0 0 0 11688.0 160.0 6.0 4.0 9.0 18731.0 12.0 18731.0 2556.0 574.0 0 t 0 0 0 0 0 0 46.0 16183.0 7.0 5.0 39.0 0.0 18731.0 0.0 440.0 7037.0 0

MA0636.1_rc_shift6 (BHLHE41_rc)
; oligos_6nt_mkv1_m2 versus MA0636.1_rc (BHLHE41_rc); m=5/19; ncol2=10; w=0; offset=2; strand=R; shift=6; score=0.615222; ------gTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 1963.0 23.0 0.0 5574.0 0.0 5.0 3.0 1.0 5574.0 59.0 0 c 0 0 0 0 0 0 985.0 7.0 5574.0 16.0 5574.0 1.0 21.0 3.0 1831.0 5574.0 0 g 0 0 0 0 0 0 5574.0 1229.0 1.0 16.0 1.0 5574.0 12.0 5574.0 17.0 1046.0 0 t 0 0 0 0 0 0 74.0 5574.0 1.0 19.0 2.0 1.0 5574.0 2.0 98.0 2894.0 0

MA0828.3_shift6 (SREBF2)
; oligos_6nt_mkv1_m2 versus MA0828.3 (SREBF2); m=6/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.602621; ------rTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 9699.0 103.0 0.0 14252.0 12.0 6.0 2.0 0.0 14252.0 1.0 0 c 0 0 0 0 0 0 119.0 60.0 14252.0 0.0 14252.0 553.0 218.0 26.0 1.0 4548.0 0 g 0 0 0 0 0 0 4554.0 4.0 24.0 205.0 556.0 14252.0 0.0 14252.0 61.0 116.0 0 t 0 0 0 0 0 0 1.0 14252.0 0.0 1.0 5.0 12.0 14252.0 0.0 107.0 9704.0 0

MA0663.1_shift6 (MLX)
; oligos_6nt_mkv1_m2 versus MA0663.1 (MLX); m=7/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.59418; ------rTCACGTGAt- ; cor=; Ncor= a 0 0 0 0 0 0 177.0 0.0 3.0 234.0 0.0 1.0 2.0 2.0 240.0 23.0 0 c 0 0 0 0 0 0 4.0 17.0 251.0 0.0 257.0 0.0 1.0 0.0 9.0 84.0 0 g 0 0 0 0 0 0 110.0 61.0 3.0 6.0 0.0 558.0 1.0 555.0 35.0 6.0 0 t 0 0 0 0 0 0 41.0 322.0 4.0 0.0 0.0 1.0 315.0 5.0 16.0 235.0 0

MA0829.3_rc_shift6 (SREBF1_rc)
; oligos_6nt_mkv1_m2 versus MA0829.3_rc (SREBF1_rc); m=8/19; ncol2=10; w=0; offset=2; strand=R; shift=6; score=0.582117; ------ATCAsGTGAT- ; cor=; Ncor= a 0 0 0 0 0 0 5034.0 197.0 71.0 6866.0 61.0 124.0 131.0 110.0 6670.0 160.0 0 c 0 0 0 0 0 0 510.0 116.0 6786.0 45.0 2702.0 1467.0 57.0 158.0 128.0 1576.0 0 g 0 0 0 0 0 0 1456.0 118.0 221.0 100.0 4187.0 5502.0 61.0 6770.0 165.0 484.0 0 t 0 0 0 0 0 0 141.0 6710.0 63.0 130.0 191.0 48.0 6892.0 103.0 178.0 4921.0 0

MA1570.1_shift6 (TFAP4)
; oligos_6nt_mkv1_m2 versus MA1570.1 (TFAP4); m=9/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.550027; ------ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA0692.2_rc_shift6 (TFEB_rc)
; oligos_6nt_mkv1_m2 versus MA0692.2_rc (TFEB_rc); m=10/19; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.525379; ------rTCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 2826.0 807.0 11.0 8715.0 5.0 1155.0 274.0 3.0 0 0 0 c 0 0 0 0 0 0 558.0 872.0 8715.0 150.0 8715.0 83.0 62.0 0.0 0 0 0 g 0 0 0 0 0 0 5889.0 2342.0 10.0 169.0 288.0 8715.0 286.0 8715.0 0 0 0 t 0 0 0 0 0 0 283.0 8715.0 9.0 454.0 2762.0 0.0 8715.0 17.0 0 0 0

MA1939.2_shift0 (ERF::SREBF2)
; oligos_6nt_mkv1_m2 versus MA1939.2 (ERF::SREBF2); m=11/19; ncol2=16; w=-4; offset=-4; strand=D; shift=0; score=0.506271; sCGGAArTCACGTGAy- ; cor=; Ncor= a 93.0 58.0 5.0 2.0 373.0 373.0 227.0 4.0 37.0 373.0 0.0 0.0 30.0 0.0 299.0 7.0 0 c 211.0 373.0 7.0 15.0 7.0 61.0 0.0 4.0 373.0 2.0 373.0 96.0 10.0 0.0 0.0 111.0 0 g 162.0 1.0 373.0 373.0 0.0 0.0 146.0 13.0 7.0 4.0 5.0 373.0 8.0 373.0 24.0 8.0 0 t 17.0 34.0 0.0 14.0 31.0 73.0 1.0 352.0 12.0 1.0 15.0 5.0 373.0 10.0 50.0 246.0 0

MA0871.3_rc_shift6 (TFEC_rc)
; oligos_6nt_mkv1_m2 versus MA0871.3_rc (TFEC_rc); m=12/19; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.502335; ------GTCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 1052.0 47.0 0.0 7952.0 0.0 210.0 374.0 0.0 0 0 0 c 0 0 0 0 0 0 58.0 143.0 7952.0 0.0 7952.0 0.0 145.0 3.0 0 0 0 g 0 0 0 0 0 0 6900.0 411.0 4.0 0.0 0.0 7952.0 0.0 7952.0 0 0 0 t 0 0 0 0 0 0 17.0 7952.0 0.0 0.0 69.0 0.0 7952.0 0.0 0 0 0

MA0603.2_shift6 (Arntl)
; oligos_6nt_mkv1_m2 versus MA0603.2 (Arntl); m=13/19; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.484114; ------gTCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 246.0 62.0 3.0 953.0 2.0 48.0 54.0 9.0 0 0 0 c 0 0 0 0 0 0 125.0 44.0 997.0 16.0 965.0 3.0 58.0 4.0 0 0 0 g 0 0 0 0 0 0 558.0 143.0 0.0 10.0 9.0 946.0 51.0 938.0 0 0 0 t 0 0 0 0 0 0 71.0 752.0 0.0 21.0 24.0 3.0 837.0 48.0 0 0 0

MA1464.2_shift6 (ARNT2)
; oligos_6nt_mkv1_m2 versus MA1464.2 (ARNT2); m=14/19; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.484021; ------rtCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 11781.0 9572.0 505.0 40622.0 0.0 84.0 651.0 14.0 0 0 0 c 0 0 0 0 0 0 4265.0 4901.0 40622.0 122.0 40622.0 0.0 932.0 0.0 0 0 0 g 0 0 0 0 0 0 28841.0 9525.0 115.0 532.0 0.0 40622.0 111.0 40622.0 0 0 0 t 0 0 0 0 0 0 1951.0 40622.0 0.0 460.0 148.0 0.0 40622.0 971.0 0 0 0

MA0664.2_rc_shift8 (MLXIPL_rc)
; oligos_6nt_mkv1_m2 versus MA0664.2_rc (MLXIPL_rc); m=15/19; ncol2=8; w=0; offset=4; strand=R; shift=8; score=0.481933; --------CACGTGay- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 562.0 0.0 0.0 5.0 0.0 468.0 113.0 0 c 0 0 0 0 0 0 0 0 727.0 3.0 735.0 12.0 2.0 11.0 133.0 220.0 0 g 0 0 0 0 0 0 0 0 0.0 0.0 2.0 452.0 0.0 448.0 28.0 31.0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 20.0 2.0 411.0 0.0 126.0 345.0 0

MA0018.5_shift7 (CREB1)
; oligos_6nt_mkv1_m2 versus MA0018.5 (CREB1); m=16/19; ncol2=8; w=0; offset=3; strand=D; shift=7; score=0.463386; -------TGATGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1911.0 1728.0 73505.0 2186.0 1417.0 8889.0 3533.0 75819.0 0 0 c 0 0 0 0 0 0 0 970.0 2298.0 1748.0 14144.0 1895.0 1231.0 71982.0 1018.0 0 0 g 0 0 0 0 0 0 0 1109.0 72555.0 2012.0 6339.0 74401.0 1207.0 2177.0 1222.0 0 0 t 0 0 0 0 0 0 0 75554.0 2963.0 2279.0 56875.0 1831.0 68217.0 1852.0 1485.0 0 0

MA0464.3_shift7 (BHLHE40)
; oligos_6nt_mkv1_m2 versus MA0464.3 (BHLHE40); m=17/19; ncol2=8; w=0; offset=3; strand=D; shift=7; score=0.445663; -------kCACGTGm-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 0 0 c 0 0 0 0 0 0 0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 0 0 g 0 0 0 0 0 0 0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 0 0 t 0 0 0 0 0 0 0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 0 0

MA1108.3_rc_shift8 (MXI1_rc)
; oligos_6nt_mkv1_m2 versus MA1108.3_rc (MXI1_rc); m=18/19; ncol2=6; w=0; offset=4; strand=R; shift=8; score=0.439706; --------CATGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 175.0 21541.0 0.0 468.0 7.0 460.0 0 0 0 c 0 0 0 0 0 0 0 0 21232.0 0.0 1542.0 18.0 170.0 97.0 0 0 0 g 0 0 0 0 0 0 0 0 114.0 507.0 0.0 21552.0 1.0 21382.0 0 0 0 t 0 0 0 0 0 0 0 0 527.0 0.0 20506.0 10.0 21870.0 109.0 0 0 0

MA0775.2_rc_shift4 (MEIS3_rc)
; oligos_6nt_mkv1_m2 versus MA0775.2_rc (MEIS3_rc); m=19/19; ncol2=7; w=0; offset=0; strand=R; shift=4; score=0.436299; ----cTGTCAw------ ; cor=; Ncor= a 0 0 0 0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 0 c 0 0 0 0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 0 g 0 0 0 0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 0 t 0 0 0 0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m2_shift4 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=13; shift=4; ncol=17; ----mtGtCATRTsAyv ; Alignment reference a 0 0 0 0 8 2 2 3 0 17 0 5 2 1 15 0 7 c 0 0 0 0 5 4 1 3 13 1 4 0 1 5 0 7 5 g 0 0 0 0 2 2 13 0 4 0 0 13 0 11 2 3 6 t 0 0 0 0 3 10 2 12 1 0 14 0 15 1 1 8 0
MA0093.4_shift6 (USF1)				; oligos_6nt_mkv1_m2 versus MA0093.4 (USF1); m=1/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.718843; ------GTCATGTGAC- ; cor=; Ncor= a 0 0 0 0 0 0 7574.0 3841.0 533.0 53654.0 418.0 3453.0 448.0 403.0 45587.0 1845.0 0 c 0 0 0 0 0 0 3030.0 9543.0 53536.0 654.0 13185.0 1387.0 264.0 817.0 3045.0 41450.0 0 g 0 0 0 0 0 0 43094.0 3912.0 766.0 477.0 3666.0 50076.0 601.0 53634.0 4679.0 3018.0 0 t 0 0 0 0 0 0 1636.0 38038.0 499.0 549.0 38065.0 418.0 54021.0 480.0 2023.0 9021.0 0
MA0620.4_rc_shift6 (MITF_rc)				; oligos_6nt_mkv1_m2 versus MA0620.4_rc (MITF_rc); m=2/19; ncol2=10; w=0; offset=2; strand=R; shift=6; score=0.672009; ------rTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 19439.0 2414.0 237.0 61548.0 313.0 14302.0 760.0 208.0 53123.0 2120.0 0 c 0 0 0 0 0 0 5204.0 4999.0 62666.0 751.0 47768.0 1140.0 469.0 416.0 2991.0 36761.0 0 g 0 0 0 0 0 0 36765.0 2990.0 416.0 469.0 1140.0 47772.0 751.0 62666.0 4997.0 5205.0 0 t 0 0 0 0 0 0 2119.0 53124.0 208.0 759.0 14306.0 313.0 61547.0 237.0 2416.0 19441.0 0
MA0831.3_rc_shift6 (TFE3_rc)				; oligos_6nt_mkv1_m2 versus MA0831.3_rc (TFE3_rc); m=3/19; ncol2=10; w=0; offset=2; strand=R; shift=6; score=0.636612; ------rTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 6291.0 594.0 0.0 19939.0 0.0 774.0 34.0 0.0 19939.0 142.0 0 c 0 0 0 0 0 0 1050.0 1725.0 19939.0 16.0 19939.0 6.0 6.0 4.0 1295.0 13651.0 0 g 0 0 0 0 0 0 13648.0 1312.0 5.0 0.0 6.0 19939.0 10.0 19939.0 1743.0 1050.0 0 t 0 0 0 0 0 0 124.0 19939.0 0.0 39.0 782.0 0.0 19939.0 0.0 591.0 6289.0 0
MA0526.5_shift6 (USF2)				; oligos_6nt_mkv1_m2 versus MA0526.5 (USF2); m=4/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.628356; ------rTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 7043.0 450.0 0.0 18731.0 0.0 41.0 10.0 15.0 16175.0 33.0 0 c 0 0 0 0 0 0 583.0 2548.0 18731.0 6.0 18731.0 0.0 4.0 9.0 162.0 11694.0 0 g 0 0 0 0 0 0 11688.0 160.0 6.0 4.0 9.0 18731.0 12.0 18731.0 2556.0 574.0 0 t 0 0 0 0 0 0 46.0 16183.0 7.0 5.0 39.0 0.0 18731.0 0.0 440.0 7037.0 0
MA0636.1_rc_shift6 (BHLHE41_rc)				; oligos_6nt_mkv1_m2 versus MA0636.1_rc (BHLHE41_rc); m=5/19; ncol2=10; w=0; offset=2; strand=R; shift=6; score=0.615222; ------gTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 1963.0 23.0 0.0 5574.0 0.0 5.0 3.0 1.0 5574.0 59.0 0 c 0 0 0 0 0 0 985.0 7.0 5574.0 16.0 5574.0 1.0 21.0 3.0 1831.0 5574.0 0 g 0 0 0 0 0 0 5574.0 1229.0 1.0 16.0 1.0 5574.0 12.0 5574.0 17.0 1046.0 0 t 0 0 0 0 0 0 74.0 5574.0 1.0 19.0 2.0 1.0 5574.0 2.0 98.0 2894.0 0
MA0828.3_shift6 (SREBF2)				; oligos_6nt_mkv1_m2 versus MA0828.3 (SREBF2); m=6/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.602621; ------rTCACGTGAy- ; cor=; Ncor= a 0 0 0 0 0 0 9699.0 103.0 0.0 14252.0 12.0 6.0 2.0 0.0 14252.0 1.0 0 c 0 0 0 0 0 0 119.0 60.0 14252.0 0.0 14252.0 553.0 218.0 26.0 1.0 4548.0 0 g 0 0 0 0 0 0 4554.0 4.0 24.0 205.0 556.0 14252.0 0.0 14252.0 61.0 116.0 0 t 0 0 0 0 0 0 1.0 14252.0 0.0 1.0 5.0 12.0 14252.0 0.0 107.0 9704.0 0
MA0663.1_shift6 (MLX)				; oligos_6nt_mkv1_m2 versus MA0663.1 (MLX); m=7/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.59418; ------rTCACGTGAt- ; cor=; Ncor= a 0 0 0 0 0 0 177.0 0.0 3.0 234.0 0.0 1.0 2.0 2.0 240.0 23.0 0 c 0 0 0 0 0 0 4.0 17.0 251.0 0.0 257.0 0.0 1.0 0.0 9.0 84.0 0 g 0 0 0 0 0 0 110.0 61.0 3.0 6.0 0.0 558.0 1.0 555.0 35.0 6.0 0 t 0 0 0 0 0 0 41.0 322.0 4.0 0.0 0.0 1.0 315.0 5.0 16.0 235.0 0
MA0829.3_rc_shift6 (SREBF1_rc)				; oligos_6nt_mkv1_m2 versus MA0829.3_rc (SREBF1_rc); m=8/19; ncol2=10; w=0; offset=2; strand=R; shift=6; score=0.582117; ------ATCAsGTGAT- ; cor=; Ncor= a 0 0 0 0 0 0 5034.0 197.0 71.0 6866.0 61.0 124.0 131.0 110.0 6670.0 160.0 0 c 0 0 0 0 0 0 510.0 116.0 6786.0 45.0 2702.0 1467.0 57.0 158.0 128.0 1576.0 0 g 0 0 0 0 0 0 1456.0 118.0 221.0 100.0 4187.0 5502.0 61.0 6770.0 165.0 484.0 0 t 0 0 0 0 0 0 141.0 6710.0 63.0 130.0 191.0 48.0 6892.0 103.0 178.0 4921.0 0
MA1570.1_shift6 (TFAP4)				; oligos_6nt_mkv1_m2 versus MA1570.1 (TFAP4); m=9/19; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.550027; ------ahCAyrTGkt- ; cor=; Ncor= a 0 0 0 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 0 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 0 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 0 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0
MA0692.2_rc_shift6 (TFEB_rc)				; oligos_6nt_mkv1_m2 versus MA0692.2_rc (TFEB_rc); m=10/19; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.525379; ------rTCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 2826.0 807.0 11.0 8715.0 5.0 1155.0 274.0 3.0 0 0 0 c 0 0 0 0 0 0 558.0 872.0 8715.0 150.0 8715.0 83.0 62.0 0.0 0 0 0 g 0 0 0 0 0 0 5889.0 2342.0 10.0 169.0 288.0 8715.0 286.0 8715.0 0 0 0 t 0 0 0 0 0 0 283.0 8715.0 9.0 454.0 2762.0 0.0 8715.0 17.0 0 0 0
MA1939.2_shift0 (ERF::SREBF2)				; oligos_6nt_mkv1_m2 versus MA1939.2 (ERF::SREBF2); m=11/19; ncol2=16; w=-4; offset=-4; strand=D; shift=0; score=0.506271; sCGGAArTCACGTGAy- ; cor=; Ncor= a 93.0 58.0 5.0 2.0 373.0 373.0 227.0 4.0 37.0 373.0 0.0 0.0 30.0 0.0 299.0 7.0 0 c 211.0 373.0 7.0 15.0 7.0 61.0 0.0 4.0 373.0 2.0 373.0 96.0 10.0 0.0 0.0 111.0 0 g 162.0 1.0 373.0 373.0 0.0 0.0 146.0 13.0 7.0 4.0 5.0 373.0 8.0 373.0 24.0 8.0 0 t 17.0 34.0 0.0 14.0 31.0 73.0 1.0 352.0 12.0 1.0 15.0 5.0 373.0 10.0 50.0 246.0 0
MA0871.3_rc_shift6 (TFEC_rc)				; oligos_6nt_mkv1_m2 versus MA0871.3_rc (TFEC_rc); m=12/19; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.502335; ------GTCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 1052.0 47.0 0.0 7952.0 0.0 210.0 374.0 0.0 0 0 0 c 0 0 0 0 0 0 58.0 143.0 7952.0 0.0 7952.0 0.0 145.0 3.0 0 0 0 g 0 0 0 0 0 0 6900.0 411.0 4.0 0.0 0.0 7952.0 0.0 7952.0 0 0 0 t 0 0 0 0 0 0 17.0 7952.0 0.0 0.0 69.0 0.0 7952.0 0.0 0 0 0
MA0603.2_shift6 (Arntl)				; oligos_6nt_mkv1_m2 versus MA0603.2 (Arntl); m=13/19; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.484114; ------gTCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 246.0 62.0 3.0 953.0 2.0 48.0 54.0 9.0 0 0 0 c 0 0 0 0 0 0 125.0 44.0 997.0 16.0 965.0 3.0 58.0 4.0 0 0 0 g 0 0 0 0 0 0 558.0 143.0 0.0 10.0 9.0 946.0 51.0 938.0 0 0 0 t 0 0 0 0 0 0 71.0 752.0 0.0 21.0 24.0 3.0 837.0 48.0 0 0 0
MA1464.2_shift6 (ARNT2)				; oligos_6nt_mkv1_m2 versus MA1464.2 (ARNT2); m=14/19; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.484021; ------rtCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 11781.0 9572.0 505.0 40622.0 0.0 84.0 651.0 14.0 0 0 0 c 0 0 0 0 0 0 4265.0 4901.0 40622.0 122.0 40622.0 0.0 932.0 0.0 0 0 0 g 0 0 0 0 0 0 28841.0 9525.0 115.0 532.0 0.0 40622.0 111.0 40622.0 0 0 0 t 0 0 0 0 0 0 1951.0 40622.0 0.0 460.0 148.0 0.0 40622.0 971.0 0 0 0
MA0664.2_rc_shift8 (MLXIPL_rc)				; oligos_6nt_mkv1_m2 versus MA0664.2_rc (MLXIPL_rc); m=15/19; ncol2=8; w=0; offset=4; strand=R; shift=8; score=0.481933; --------CACGTGay- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 562.0 0.0 0.0 5.0 0.0 468.0 113.0 0 c 0 0 0 0 0 0 0 0 727.0 3.0 735.0 12.0 2.0 11.0 133.0 220.0 0 g 0 0 0 0 0 0 0 0 0.0 0.0 2.0 452.0 0.0 448.0 28.0 31.0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 20.0 2.0 411.0 0.0 126.0 345.0 0
MA0018.5_shift7 (CREB1)				; oligos_6nt_mkv1_m2 versus MA0018.5 (CREB1); m=16/19; ncol2=8; w=0; offset=3; strand=D; shift=7; score=0.463386; -------TGATGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1911.0 1728.0 73505.0 2186.0 1417.0 8889.0 3533.0 75819.0 0 0 c 0 0 0 0 0 0 0 970.0 2298.0 1748.0 14144.0 1895.0 1231.0 71982.0 1018.0 0 0 g 0 0 0 0 0 0 0 1109.0 72555.0 2012.0 6339.0 74401.0 1207.0 2177.0 1222.0 0 0 t 0 0 0 0 0 0 0 75554.0 2963.0 2279.0 56875.0 1831.0 68217.0 1852.0 1485.0 0 0
MA0464.3_shift7 (BHLHE40)				; oligos_6nt_mkv1_m2 versus MA0464.3 (BHLHE40); m=17/19; ncol2=8; w=0; offset=3; strand=D; shift=7; score=0.445663; -------kCACGTGm-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 0 0 c 0 0 0 0 0 0 0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 0 0 g 0 0 0 0 0 0 0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 0 0 t 0 0 0 0 0 0 0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 0 0
MA1108.3_rc_shift8 (MXI1_rc)				; oligos_6nt_mkv1_m2 versus MA1108.3_rc (MXI1_rc); m=18/19; ncol2=6; w=0; offset=4; strand=R; shift=8; score=0.439706; --------CATGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 175.0 21541.0 0.0 468.0 7.0 460.0 0 0 0 c 0 0 0 0 0 0 0 0 21232.0 0.0 1542.0 18.0 170.0 97.0 0 0 0 g 0 0 0 0 0 0 0 0 114.0 507.0 0.0 21552.0 1.0 21382.0 0 0 0 t 0 0 0 0 0 0 0 0 527.0 0.0 20506.0 10.0 21870.0 109.0 0 0 0
MA0775.2_rc_shift4 (MEIS3_rc)				; oligos_6nt_mkv1_m2 versus MA0775.2_rc (MEIS3_rc); m=19/19; ncol2=7; w=0; offset=0; strand=R; shift=4; score=0.436299; ----cTGTCAw------ ; cor=; Ncor= a 0 0 0 0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 0 c 0 0 0 0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 0 g 0 0 0 0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 0 t 0 0 0 0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0 0