compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3.tf Output files match_table_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html html_index $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant alignments_1ton $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3.tf file1 1 17 6 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv1_m3 | MA1101.3 | oligos_6nt_mkv1_m3 | BACH2 | 0.728 | 0.471 | 17 | 11 | 11 | 17 | 0.6471 | 0.6471 | 1.0000 | R | 6 |
| oligos_6nt_mkv1_m3 | MA0841.2 | oligos_6nt_mkv1_m3 | NFE2 | 0.768 | 0.452 | 17 | 10 | 10 | 17 | 0.5882 | 0.5882 | 1.0000 | R | 6 |
| oligos_6nt_mkv1_m3 | MA0829.3 | oligos_6nt_mkv1_m3 | SREBF1 | 0.876 | 0.438 | 17 | 10 | 9 | 18 | 0.5000 | 0.5294 | 0.9000 | R | -1 |
| oligos_6nt_mkv1_m3 | MA0093.4 | oligos_6nt_mkv1_m3 | USF1 | 0.871 | 0.435 | 17 | 10 | 9 | 18 | 0.5000 | 0.5294 | 0.9000 | D | -1 |
| oligos_6nt_mkv1_m3 | MA0828.3 | oligos_6nt_mkv1_m3 | SREBF2 | 0.863 | 0.432 | 17 | 10 | 9 | 18 | 0.5000 | 0.5294 | 0.9000 | D | -1 |
| oligos_6nt_mkv1_m3 | MA0663.1 | oligos_6nt_mkv1_m3 | MLX | 0.850 | 0.425 | 17 | 10 | 9 | 18 | 0.5000 | 0.5294 | 0.9000 | D | -1 |
| oligos_6nt_mkv1_m3 | MA0620.4 | oligos_6nt_mkv1_m3 | MITF | 0.841 | 0.421 | 17 | 10 | 9 | 18 | 0.5000 | 0.5294 | 0.9000 | R | -1 |
| oligos_6nt_mkv1_m3 | MA1633.2 | oligos_6nt_mkv1_m3 | BACH1 | 0.771 | 0.408 | 17 | 9 | 9 | 17 | 0.5294 | 0.5294 | 1.0000 | R | 7 |
| oligos_6nt_mkv1_m3 | MA0655.1 | oligos_6nt_mkv1_m3 | JDP2 | 0.769 | 0.407 | 17 | 9 | 9 | 17 | 0.5294 | 0.5294 | 1.0000 | R | 7 |
| oligos_6nt_mkv1_m3 | MA0490.3 | oligos_6nt_mkv1_m3 | JUNB | 0.761 | 0.403 | 17 | 9 | 9 | 17 | 0.5294 | 0.5294 | 1.0000 | R | 7 |
| oligos_6nt_mkv1_m3 | MA0526.5 | oligos_6nt_mkv1_m3 | USF2 | 0.806 | 0.403 | 17 | 10 | 9 | 18 | 0.5000 | 0.5294 | 0.9000 | R | -1 |
| oligos_6nt_mkv1_m3 | MA0831.3 | oligos_6nt_mkv1_m3 | TFE3 | 0.801 | 0.401 | 17 | 10 | 9 | 18 | 0.5000 | 0.5294 | 0.9000 | R | -1 |
| oligos_6nt_mkv1_m3 | MA0491.3 | oligos_6nt_mkv1_m3 | JUND | 0.756 | 0.400 | 17 | 9 | 9 | 17 | 0.5294 | 0.5294 | 1.0000 | R | 7 |
Host name rsat Job started 2025-05-16.175558 Job done 2025-05-16.175614 Seconds 3.01 user 3.02 system 0.62 cuser 11.25 ; csystem 0.72