/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	9 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	13	18
		file1	2	17	6
		file1	3	10	29
		file1	4	12	4
		file1	5	24	30
		file1	6	24	57
		file1	7	22	17
		file1	8	24	2
		file1	9	24	19
	file2	9 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175517_2025-05-16.175517_w6aMRg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		13		18
		file2		2		17		6
		file2		3		10		29
		file2		4		12		4
		file2		5		24		30
		file2		6		24		57
		file2		7		22		17
		file2		8		24		2
		file2		9		24		19
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 1.000 1.000 22 22 22 22 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m5 0.986 0.907 24 24 23 25 0.9200 0.9583 0.9583 D -1
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m1 0.986 0.907 24 24 23 25 0.9200 0.9583 0.9583 D 1
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m2 0.974 0.896 24 24 23 25 0.9200 0.9583 0.9583 R -1
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m5 0.974 0.896 24 24 23 25 0.9200 0.9583 0.9583 R -1
oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m2 0.986 0.834 24 24 22 26 0.8462 0.9167 0.9167 R -2
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m1 0.986 0.834 24 24 22 26 0.8462 0.9167 0.9167 R -2
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 0.787 0.721 22 24 22 24 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 0.787 0.721 24 22 22 24 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m5 0.758 0.695 22 24 22 24 0.9167 1.0000 0.9167 R -1
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m3 0.758 0.695 24 22 22 24 0.9167 0.9167 1.0000 R 1
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m1 0.745 0.683 22 24 22 24 0.9167 1.0000 0.9167 R -2
oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m3 0.745 0.683 24 22 22 24 0.9167 0.9167 1.0000 R 0
oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 0.791 0.611 22 17 17 22 0.7727 0.7727 1.0000 R 2
oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 0.791 0.611 17 22 17 22 0.7727 1.0000 0.7727 R -3
oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 0.946 0.546 17 24 15 26 0.5769 0.8824 0.6250 R 2
oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 0.946 0.546 24 17 15 26 0.5769 0.6250 0.8824 R 9
oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m2 0.933 0.505 24 13 13 24 0.5417 0.5417 1.0000 D 11
oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m5 0.933 0.505 13 24 13 24 0.5417 1.0000 0.5417 D -11
oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 0.915 0.496 13 24 13 24 0.5417 1.0000 0.5417 D -10
oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 0.915 0.496 24 13 13 24 0.5417 0.5417 1.0000 D 10
oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m3 0.931 0.483 24 17 14 27 0.5185 0.5833 0.8235 D -3
oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m5 0.931 0.483 17 24 14 27 0.5185 0.8235 0.5833 D 3
oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m3 0.961 0.446 24 17 13 28 0.4643 0.5417 0.7647 D -4
oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m1 0.961 0.446 17 24 13 28 0.4643 0.7647 0.5417 D 4
oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m2 0.911 0.437 13 24 12 25 0.4800 0.9231 0.5000 R -12
oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m2 0.911 0.437 24 13 12 25 0.4800 0.5000 0.9231 R -1
oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m2 0.865 0.432 17 13 10 20 0.5000 0.5882 0.7692 D -3
oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m3 0.865 0.432 13 17 10 20 0.5000 0.7692 0.5882 D 3
oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m5 0.706 0.424 24 24 18 30 0.6000 0.7500 0.7500 R 6
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m4 0.706 0.424 24 24 18 30 0.6000 0.7500 0.7500 R 6 
 Host name	rsat
 Job started	2025-05-16.175537
 Job done	2025-05-16.175544
 Seconds	0.31
	user	0.31
	system	0.26
	cuser	5.74
;	csystem	1