position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Oligodendrocyte_precursor_cells_control_MDD_up -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 66 Sum of sequence lengths 50692 Min sequence length 0 Max sequence length 1000 Average sequence length 768 Possible positions 50692 Sequences: # length ID 1 1000 chr17:78351273-78354165 2 1000 chr7:74371028-74373138 3 1000 chr19:15263695-15266979 4 1000 chr5:21481240-21482787 5 1000 chr19:940001-941634 6 865 chr17:79577393-79578257 7 1000 chr7:25367977-25369146 8 786 chr17:50556518-50557303 9 680 chr5:83507243-83507922 10 962 chr9:128920217-128921178 11 778 chr15:71850397-71851174 12 1000 chr11:115622582-115623591 13 1000 chr4:65390947-65392403 14 463 chr21:8212969-8213431 15 557 chr2:12514531-12515087 16 282 chr7:99543112-99543393 17 1000 chr11:19755827-19757437 18 343 chr1:3678383-3678725 19 355 chr16:11180501-11180855 20 971 chr7:98807033-98808003 21 1000 chr9:109182842-109183853 22 1000 chr1:231795739-231796838 23 250 chr4:40804798-40805047 24 776 chr7:158849912-158850687 25 1000 chr1:88327322-88328381 26 241 chr15:30470849-30471089 27 1000 chr1:10781920-10783240 28 1000 chr2:235709984-235711000 29 1000 chr22:36155375-36157489 30 1000 chr20:45357204-45358711 31 319 chr17:37521911-37522229 32 1000 chr17:68076940-68077961 33 847 chr1:40204551-40205397 34 645 chr11:66102438-66103082 35 230 chr10:78283335-78283564 36 997 chr7:101184838-101185834 37 635 chr1:205907617-205908251 38 366 chr20:63210047-63210412 39 929 chr9:108478108-108479036 40 1000 chr8:1526671-1527791 41 848 chr10:102758295-102759142 42 1000 chr4:2432494-2434769 43 1000 chr5:172496618-172497687 44 381 chr19:34261005-34261385 45 352 chr7:1064272-1064623 46 315 chr1:229304996-229305310 47 1000 chr12:124745147-124746497 48 1000 chr7:142414637-142415813 49 465 chr5:136164085-136164549 50 200 chr1:2348317-2348516 51 425 chr18:24112991-24113415 52 879 chr6:19554277-19555155 53 1000 chr10:59007924-59009149 54 1000 chr22:20028502-20030044 55 1000 chr18:56137743-56140706 56 1000 chr3:47961574-47962731 57 812 chr16:53643264-53644075 58 663 chr15:23001772-23002434 59 1000 chr16:12970719-12971999 60 1000 chr20:17420697-17421757 61 1000 chr5:137699063-137700433 62 1000 chr22:49888517-49889763 63 1000 chr20:64285534-64287561 64 335 chr17:59694127-59694461 65 208 chr3:177158527-177158734 66 532 chrX:71627887-71628418 Oligonucleotide statistics: Total occurrences 49096 Position interval parameters: Position interval 20 Number of windows 50 Total positions 50692 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 34 647 2 -24 [-479,-460] -469.5 35 685 3 -23 [-459,-440] -449.5 35 700 4 -22 [-439,-420] -429.5 39 741 5 -21 [-419,-400] -409.5 40 786 6 -20 [-399,-380] -389.5 43 832 7 -19 [-379,-360] -369.5 43 860 8 -18 [-359,-340] -349.5 43 860 9 -17 [-339,-320] -329.5 46 895 10 -16 [-319,-300] -309.5 47 938 11 -15 [-299,-280] -289.5 47 940 12 -14 [-279,-260] -269.5 49 965 13 -13 [-259,-240] -249.5 49 980 14 -12 [-239,-220] -229.5 51 1005 15 -11 [-219,-200] -209.5 52 1033 16 -10 [-199,-180] -189.5 54 1055 17 -9 [-179,-160] -169.5 58 1134 18 -8 [-159,-140] -149.5 61 1200 19 -7 [-139,-120] -129.5 63 1227 20 -6 [-119,-100] -109.5 65 1280 21 -5 [-99,-80] -89.5 66 1320 22 -4 [-79,-60] -69.5 66 1320 23 -3 [-59,-40] -49.5 66 1320 24 -2 [-39,-20] -29.5 66 1320 25 -1 [-19,0] -9.5 66 1320 26 0 [1,20] 10.5 66 1320 27 1 [21,40] 30.5 66 1320 28 2 [41,60] 50.5 66 1320 29 3 [61,80] 70.5 66 1320 30 4 [81,100] 90.5 66 1320 31 5 [101,120] 110.5 65 1278 32 6 [121,140] 130.5 62 1224 33 7 [141,160] 150.5 60 1196 34 8 [161,180] 170.5 58 1131 35 9 [181,200] 190.5 54 1052 36 10 [201,220] 210.5 52 1032 37 11 [221,240] 230.5 51 1003 38 12 [241,260] 250.5 49 980 39 13 [261,280] 270.5 49 964 40 14 [281,300] 290.5 47 940 41 15 [301,320] 310.5 47 937 42 16 [321,340] 330.5 46 893 43 17 [341,360] 350.5 43 860 44 18 [361,380] 370.5 43 860 45 19 [381,400] 390.5 43 828 46 20 [401,420] 410.5 40 786 47 21 [421,440] 430.5 39 738 48 22 [441,460] 450.5 35 700 49 23 [461,480] 470.5 35 684 50 24 [481,500] 490.5 33 643 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 11886 | 81.3 | 49 | 2.6e-03 | 0.01 | 1.99 | 1 | 136 | 157 | 133 | 185 | 160 | 189 | 193 | 188 | 198 | 197 | 224 | 226 | 205 | 219 | 193 | 241 | 254 | 269 | 284 | 295 | 314 | 325 | 345 | 308 | 300 | 343 | 359 | 313 | 358 | 333 | 300 | 345 | 294 | 279 | 256 | 252 | 234 | 233 | 217 | 223 | 208 | 175 | 199 | 190 | 189 | 198 | 166 | 168 | 171 | 145 |
| a | a | 12266 | 72.1 | 49 | 1.7e-02 | 0.07 | 1.16 | 2 | 182 | 164 | 166 | 186 | 206 | 218 | 217 | 233 | 250 | 272 | 248 | 221 | 255 | 225 | 273 | 262 | 284 | 301 | 318 | 328 | 314 | 296 | 311 | 320 | 343 | 299 | 284 | 312 | 309 | 334 | 300 | 265 | 280 | 258 | 231 | 262 | 253 | 236 | 227 | 220 | 231 | 208 | 183 | 174 | 181 | 164 | 195 | 154 | 155 | 158 |
| g | g | 12769 | 68.5 | 49 | 3.4e-02 | 0.14 | 0.86 | 3 | 191 | 184 | 203 | 189 | 200 | 198 | 222 | 216 | 237 | 231 | 203 | 242 | 242 | 254 | 240 | 241 | 250 | 265 | 299 | 332 | 325 | 322 | 326 | 359 | 366 | 349 | 371 | 331 | 319 | 369 | 347 | 304 | 311 | 266 | 287 | 244 | 248 | 255 | 232 | 235 | 242 | 245 | 218 | 220 | 232 | 188 | 162 | 172 | 150 | 135 |
| t | t | 12175 | 51.1 | 49 | 3.9e-01 | 1.6 | -0.19 | 4 | 138 | 162 | 158 | 143 | 187 | 197 | 193 | 203 | 204 | 218 | 235 | 236 | 238 | 258 | 247 | 234 | 282 | 329 | 306 | 310 | 331 | 345 | 318 | 322 | 291 | 312 | 304 | 344 | 314 | 275 | 321 | 290 | 290 | 288 | 238 | 234 | 228 | 216 | 248 | 236 | 212 | 206 | 220 | 236 | 194 | 208 | 175 | 168 | 168 | 165 |
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