/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
		file1	1	11	165
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m1 MA1653.2 oligos_6nt_mkv2_m1 ZNF148 0.830 0.754 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv2_m1 MA1961.2 oligos_6nt_mkv2_m1 PATZ1 0.746 0.746 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv2_m1 MA1630.3 oligos_6nt_mkv2_m1 ZNF281 0.765 0.695 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv2_m1 MA0599.1 oligos_6nt_mkv2_m1 KLF5 0.749 0.681 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv2_m1 MA0685.2 oligos_6nt_mkv2_m1 SP4 0.774 0.634 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv2_m1 MA0079.5 oligos_6nt_mkv2_m1 SP1 0.770 0.630 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv2_m1 MA1596.1 oligos_6nt_mkv2_m1 ZNF460 0.876 0.602 11 16 11 16 0.6875 1.0000 0.6875 D -4
oligos_6nt_mkv2_m1 MA1522.2 oligos_6nt_mkv2_m1 MAZ 0.828 0.602 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv2_m1 MA0516.3 oligos_6nt_mkv2_m1 SP2 0.727 0.595 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv2_m1 MA0740.2 oligos_6nt_mkv2_m1 KLF14 0.713 0.584 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv2_m1 MA0528.3 oligos_6nt_mkv2_m1 ZNF263 0.905 0.576 11 7 7 11 0.6364 0.6364 1.0000 R 2
oligos_6nt_mkv2_m1 MA2099.1 oligos_6nt_mkv2_m1 ZNF770 0.785 0.571 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m1 MA1587.1 oligos_6nt_mkv2_m1 ZNF135 0.707 0.555 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_6nt_mkv2_m1 MA1965.2 oligos_6nt_mkv2_m1 SP5 1.000 0.545 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_6nt_mkv2_m1 MA1627.2 oligos_6nt_mkv2_m1 Wt1 0.880 0.541 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_6nt_mkv2_m1 MA0493.3 oligos_6nt_mkv2_m1 KLF1 0.710 0.517 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv2_m1 MA1959.2 oligos_6nt_mkv2_m1 KLF7 0.710 0.516 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_6nt_mkv2_m1 MA1513.2 oligos_6nt_mkv2_m1 KLF15 0.702 0.511 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv2_m1 MA1723.2 oligos_6nt_mkv2_m1 PRDM9 0.835 0.459 11 20 11 20 0.5500 1.0000 0.5500 R -3
oligos_6nt_mkv2_m1 MA1710.2 oligos_6nt_mkv2_m1 ZNF257 0.901 0.450 11 10 7 14 0.5000 0.6364 0.7000 R -3
oligos_6nt_mkv2_m1 MA1578.2 oligos_6nt_mkv2_m1 VEZF1 0.761 0.415 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_6nt_mkv2_m1 MA1972.1 oligos_6nt_mkv2_m1 ZFP14 0.914 0.406 11 15 8 18 0.4444 0.7273 0.5333 R -7 
 Host name	rsat
 Job started	2025-05-16.175850
 Job done	2025-05-16.175858
 Seconds	1.3
	user	1.3
	system	0.39
	cuser	5.87
;	csystem	0.64