/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
		file1	1	14	125
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m2 MA0041.3 oligos_6nt_mkv2_m2 FOXD3 0.831 0.720 14 14 13 15 0.8667 0.9286 0.9286 D -1
oligos_6nt_mkv2_m2 MA1487.3 oligos_6nt_mkv2_m2 FOXE1 0.722 0.619 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_6nt_mkv2_m2 MA0847.4 oligos_6nt_mkv2_m2 FOXD2 0.732 0.576 14 11 11 14 0.7857 0.7857 1.0000 D 2
oligos_6nt_mkv2_m2 MA0497.2 oligos_6nt_mkv2_m2 MEF2C 0.724 0.569 14 11 11 14 0.7857 0.7857 1.0000 D 0
oligos_6nt_mkv2_m2 MA0052.5 oligos_6nt_mkv2_m2 MEF2A 0.724 0.517 14 10 10 14 0.7143 0.7143 1.0000 D 0
oligos_6nt_mkv2_m2 MA0846.2 oligos_6nt_mkv2_m2 FOXC2 0.770 0.514 14 11 10 15 0.6667 0.7143 0.9091 D -1
oligos_6nt_mkv2_m2 MA0032.2 oligos_6nt_mkv2_m2 FOXC1 0.762 0.508 14 11 10 15 0.6667 0.7143 0.9091 D -1
oligos_6nt_mkv2_m2 MA0851.2 oligos_6nt_mkv2_m2 Foxj3 0.772 0.497 14 9 9 14 0.6429 0.6429 1.0000 D 2
oligos_6nt_mkv2_m2 MA0901.3 oligos_6nt_mkv2_m2 HOXB13 0.772 0.496 14 9 9 14 0.6429 0.6429 1.0000 D 3
oligos_6nt_mkv2_m2 MA1113.3 oligos_6nt_mkv2_m2 PBX2 0.765 0.492 14 9 9 14 0.6429 0.6429 1.0000 D 1
oligos_6nt_mkv2_m2 MA0845.1 oligos_6nt_mkv2_m2 FOXB1 0.728 0.485 14 11 10 15 0.6667 0.7143 0.9091 D -1
oligos_6nt_mkv2_m2 MA0679.3 oligos_6nt_mkv2_m2 ONECUT1 0.748 0.481 14 9 9 14 0.6429 0.6429 1.0000 D 0
oligos_6nt_mkv2_m2 MA1640.2 oligos_6nt_mkv2_m2 MEIS2 0.744 0.478 14 9 9 14 0.6429 0.6429 1.0000 R 1
oligos_6nt_mkv2_m2 MA0899.2 oligos_6nt_mkv2_m2 HOXA10 0.740 0.476 14 9 9 14 0.6429 0.6429 1.0000 D 3
oligos_6nt_mkv2_m2 MA0913.3 oligos_6nt_mkv2_m2 HOXD9 0.717 0.461 14 9 9 14 0.6429 0.6429 1.0000 D 3
oligos_6nt_mkv2_m2 MA1473.2 oligos_6nt_mkv2_m2 CDX4 0.713 0.458 14 9 9 14 0.6429 0.6429 1.0000 D 3
oligos_6nt_mkv2_m2 MA0040.2 oligos_6nt_mkv2_m2 Foxq1 0.761 0.456 14 10 9 15 0.6000 0.6429 0.9000 R 5
oligos_6nt_mkv2_m2 MA2124.1 oligos_6nt_mkv2_m2 Hmga1 0.797 0.456 14 8 8 14 0.5714 0.5714 1.0000 R 0
oligos_6nt_mkv2_m2 MA1125.2 oligos_6nt_mkv2_m2 ZNF384 0.791 0.452 14 8 8 14 0.5714 0.5714 1.0000 D 4
oligos_6nt_mkv2_m2 MA0757.2 oligos_6nt_mkv2_m2 ONECUT3 0.708 0.443 14 12 10 16 0.6250 0.7143 0.8333 D -2
oligos_6nt_mkv2_m2 MA0465.3 oligos_6nt_mkv2_m2 CDX2 0.753 0.430 14 8 8 14 0.5714 0.5714 1.0000 D 3
oligos_6nt_mkv2_m2 MA0650.4 oligos_6nt_mkv2_m2 Hoxa13 0.745 0.426 14 8 8 14 0.5714 0.5714 1.0000 D 3
oligos_6nt_mkv2_m2 MA0703.3 oligos_6nt_mkv2_m2 LMX1B 0.738 0.422 14 8 8 14 0.5714 0.5714 1.0000 R 2
oligos_6nt_mkv2_m2 MA0614.1 oligos_6nt_mkv2_m2 Foxj2 0.721 0.412 14 8 8 14 0.5714 0.5714 1.0000 D 2 
 Host name	rsat
 Job started	2025-05-16.175858
 Job done	2025-05-16.175915
 Seconds	3
	user	3
	system	0.69
	cuser	12.11
;	csystem	0.92