/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf
		file1	1	15	117
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m1 MA0041.3 oligos_7nt_mkv2_m1 FOXD3 0.792 0.740 15 14 14 15 0.9333 0.9333 1.0000 D 0
oligos_7nt_mkv2_m1 MA0846.2 oligos_7nt_mkv2_m1 FOXC2 0.769 0.564 15 11 11 15 0.7333 0.7333 1.0000 D 0
oligos_7nt_mkv2_m1 MA0032.2 oligos_7nt_mkv2_m1 FOXC1 0.735 0.539 15 11 11 15 0.7333 0.7333 1.0000 D 0
oligos_7nt_mkv2_m1 MA0757.2 oligos_7nt_mkv2_m1 ONECUT3 0.764 0.525 15 12 11 16 0.6875 0.7333 0.9167 D -1
oligos_7nt_mkv2_m1 MA1487.3 oligos_7nt_mkv2_m1 FOXE1 0.757 0.521 15 12 11 16 0.6875 0.7333 0.9167 D -1
oligos_7nt_mkv2_m1 MA0847.4 oligos_7nt_mkv2_m1 FOXD2 0.770 0.481 15 11 10 16 0.6250 0.6667 0.9091 D -1
oligos_7nt_mkv2_m1 MA0679.3 oligos_7nt_mkv2_m1 ONECUT1 0.797 0.478 15 9 9 15 0.6000 0.6000 1.0000 D 1
oligos_7nt_mkv2_m1 MA0901.3 oligos_7nt_mkv2_m1 HOXB13 0.785 0.471 15 9 9 15 0.6000 0.6000 1.0000 D 4
oligos_7nt_mkv2_m1 MA0851.2 oligos_7nt_mkv2_m1 Foxj3 0.780 0.468 15 9 9 15 0.6000 0.6000 1.0000 D 3
oligos_7nt_mkv2_m1 MA1113.3 oligos_7nt_mkv2_m1 PBX2 0.768 0.461 15 9 9 15 0.6000 0.6000 1.0000 D 2
oligos_7nt_mkv2_m1 MA1640.2 oligos_7nt_mkv2_m1 MEIS2 0.748 0.449 15 9 9 15 0.6000 0.6000 1.0000 R 2
oligos_7nt_mkv2_m1 MA0899.2 oligos_7nt_mkv2_m1 HOXA10 0.737 0.442 15 9 9 15 0.6000 0.6000 1.0000 D 4
oligos_7nt_mkv2_m1 MA0650.4 oligos_7nt_mkv2_m1 Hoxa13 0.825 0.440 15 8 8 15 0.5333 0.5333 1.0000 D 0
oligos_7nt_mkv2_m1 MA0465.3 oligos_7nt_mkv2_m1 CDX2 0.820 0.437 15 8 8 15 0.5333 0.5333 1.0000 D 0
oligos_7nt_mkv2_m1 MA0913.3 oligos_7nt_mkv2_m1 HOXD9 0.719 0.431 15 9 9 15 0.6000 0.6000 1.0000 D 4
oligos_7nt_mkv2_m1 MA2124.1 oligos_7nt_mkv2_m1 Hmga1 0.801 0.427 15 8 8 15 0.5333 0.5333 1.0000 R 7
oligos_7nt_mkv2_m1 MA1125.2 oligos_7nt_mkv2_m1 ZNF384 0.798 0.426 15 8 8 15 0.5333 0.5333 1.0000 D 5
oligos_7nt_mkv2_m1 MA1473.2 oligos_7nt_mkv2_m1 CDX4 0.708 0.425 15 9 9 15 0.6000 0.6000 1.0000 D 4
oligos_7nt_mkv2_m1 MA0040.2 oligos_7nt_mkv2_m1 Foxq1 0.735 0.414 15 10 9 16 0.5625 0.6000 0.9000 R 6 
 Host name	rsat
 Job started	2025-05-16.175925
 Job done	2025-05-16.175939
 Seconds	2.71
	user	2.71
	system	0.58
	cuser	10.88
;	csystem	0.73