One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift1 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=15; shift=1; ncol=16; -aaaAtAAATAAAAwa ; Alignment reference a 0 53 57 78 93 25 100 105 105 3 101 102 100 82 39 47 c 0 17 16 9 4 6 5 3 5 12 3 3 5 7 20 22 g 0 19 19 11 5 11 6 6 2 4 5 7 6 8 23 19 t 0 28 25 19 15 75 6 3 5 98 8 5 6 20 35 29

MA0041.3_shift1 (FOXD3)
; oligos_7nt_mkv2_m1 versus MA0041.3 (FOXD3); m=1/19; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.739623; -wawrhAAAYAAACa- ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0

MA0846.2_shift1 (FOXC2)
; oligos_7nt_mkv2_m1 versus MA0846.2 (FOXC2); m=2/19; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.564087; -wAwrTAAAYAw---- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0 0

MA0032.2_shift1 (FOXC1)
; oligos_7nt_mkv2_m1 versus MA0032.2 (FOXC1); m=3/19; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.538955; -wAwRTMAAyAw---- ; cor=; Ncor= a 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 0 0 c 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 0 0 g 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 0 0 t 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0 0 0

MA0757.2_shift0 (ONECUT3)
; oligos_7nt_mkv2_m1 versus MA0757.2 (ONECUT3); m=4/19; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.525123; aAAAATCrATAa---- ; cor=; Ncor= a 3851.0 6080.0 6080.0 6080.0 6080.0 32.0 23.0 3950.0 6080.0 43.0 6080.0 3620.0 0 0 0 0 c 379.0 274.0 173.0 28.0 5.0 103.0 6080.0 20.0 6.0 6.0 105.0 861.0 0 0 0 0 g 1141.0 498.0 112.0 102.0 41.0 14.0 3.0 2130.0 9.0 7.0 187.0 417.0 0 0 0 0 t 709.0 878.0 1221.0 54.0 11.0 6080.0 5.0 11.0 22.0 6080.0 345.0 1182.0 0 0 0 0

MA1487.3_shift0 (FOXE1)
; oligos_7nt_mkv2_m1 versus MA1487.3 (FOXE1); m=5/19; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.520716; yTAARyAAACAa---- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0

MA0847.4_shift0 (FOXD2)
; oligos_7nt_mkv2_m1 versus MA0847.4 (FOXD2); m=6/19; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.48117; yTAAryAAACA----- ; cor=; Ncor= a 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 0 0 0 0 c 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 0 0 0 0 g 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 0 0 0 0 t 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0 0 0 0 0

MA0679.3_shift2 (ONECUT1)
; oligos_7nt_mkv2_m1 versus MA0679.3 (ONECUT1); m=7/19; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.478267; --aAATCAATA----- ; cor=; Ncor= a 0 0 37926.0 52146.0 60015.0 482.0 1345.0 59595.0 60870.0 225.0 48524.0 0 0 0 0 0 c 0 0 7555.0 1011.0 358.0 294.0 60181.0 438.0 247.0 356.0 3451.0 0 0 0 0 0 g 0 0 6149.0 7794.0 1166.0 241.0 278.0 1226.0 366.0 162.0 6072.0 0 0 0 0 0 t 0 0 10589.0 1268.0 680.0 61202.0 415.0 960.0 736.0 61476.0 4172.0 0 0 0 0 0

MA0901.3_shift5 (HOXB13)
; oligos_7nt_mkv2_m1 versus MA0901.3 (HOXB13); m=8/19; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.471199; -----cCAATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 11896.0 4212.0 66409.0 73044.0 421.0 73612.0 75997.0 76077.0 70230.0 0 0 c 0 0 0 0 0 47674.0 65312.0 4611.0 726.0 550.0 523.0 599.0 760.0 2465.0 0 0 g 0 0 0 0 0 9096.0 582.0 351.0 1913.0 586.0 1083.0 490.0 625.0 1882.0 0 0 t 0 0 0 0 0 10048.0 8608.0 7343.0 3031.0 77157.0 3496.0 1628.0 1252.0 4137.0 0 0

MA0851.2_shift4 (Foxj3)
; oligos_7nt_mkv2_m1 versus MA0851.2 (Foxj3); m=9/19; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.468042; ----RTAAACAAw--- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0 0

MA1113.3_shift3 (PBX2)
; oligos_7nt_mkv2_m1 versus MA1113.3 (PBX2); m=10/19; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.460705; ---cATAAATCA---- ; cor=; Ncor= a 0 0 0 4925.0 26620.0 225.0 24368.0 27245.0 27259.0 704.0 2298.0 25945.0 0 0 0 0 c 0 0 0 19645.0 629.0 588.0 2266.0 574.0 754.0 453.0 23894.0 848.0 0 0 0 0 g 0 0 0 1585.0 1710.0 317.0 817.0 343.0 569.0 327.0 555.0 352.0 0 0 0 0 t 0 0 0 3441.0 637.0 28466.0 2145.0 1434.0 1014.0 28112.0 2849.0 2451.0 0 0 0 0

MA1640.2_rc_shift3 (MEIS2_rc)
; oligos_7nt_mkv2_m1 versus MA1640.2_rc (MEIS2_rc); m=11/19; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.448712; ---cATAAATCA---- ; cor=; Ncor= a 0 0 0 3599.0 18144.0 157.0 16167.0 18982.0 18830.0 381.0 1067.0 14420.0 0 0 0 0 c 0 0 0 12862.0 502.0 495.0 1801.0 278.0 499.0 224.0 17326.0 1400.0 0 0 0 0 g 0 0 0 1089.0 1053.0 177.0 582.0 201.0 268.0 207.0 302.0 468.0 0 0 0 0 t 0 0 0 2623.0 474.0 19344.0 1623.0 712.0 576.0 19361.0 1478.0 3885.0 0 0 0 0

MA0899.2_shift5 (HOXA10)
; oligos_7nt_mkv2_m1 versus MA0899.2 (HOXA10); m=12/19; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.442111; -----gymATWAAa-- ; cor=; Ncor= a 0 0 0 0 0 2425.0 153.0 8381.0 8381.0 367.0 5960.0 8381.0 8381.0 8381.0 0 0 c 0 0 0 0 0 1757.0 3867.0 4516.0 455.0 11.0 84.0 36.0 568.0 2082.0 0 0 g 0 0 0 0 0 8381.0 59.0 1022.0 718.0 0.0 121.0 76.0 125.0 1560.0 0 0 t 0 0 0 0 0 1341.0 4515.0 957.0 267.0 8381.0 2422.0 384.0 331.0 2058.0 0 0

MA0650.4_shift1 (Hoxa13)
; oligos_7nt_mkv2_m1 versus MA0650.4 (Hoxa13); m=13/19; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.440228; -CCAATAAA------- ; cor=; Ncor= a 0 1442.0 1273.0 14069.0 15410.0 105.0 15804.0 16813.0 16550.0 0 0 0 0 0 0 0 c 0 12600.0 14100.0 1594.0 243.0 249.0 205.0 125.0 306.0 0 0 0 0 0 0 0 g 0 1889.0 77.0 146.0 666.0 232.0 407.0 98.0 145.0 0 0 0 0 0 0 0 t 0 1317.0 1798.0 1439.0 929.0 16662.0 832.0 212.0 247.0 0 0 0 0 0 0 0

MA0465.3_shift1 (CDX2)
; oligos_7nt_mkv2_m1 versus MA0465.3 (CDX2); m=14/19; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.437374; -GCAATAAA------- ; cor=; Ncor= a 0 3157.0 1226.0 26720.0 29957.0 274.0 29221.0 30645.0 30125.0 0 0 0 0 0 0 0 c 0 2096.0 26587.0 3312.0 414.0 391.0 761.0 349.0 595.0 0 0 0 0 0 0 0 g 0 24214.0 607.0 184.0 1196.0 386.0 999.0 366.0 502.0 0 0 0 0 0 0 0 t 0 2559.0 3606.0 1810.0 459.0 30975.0 1045.0 666.0 804.0 0 0 0 0 0 0 0

MA0913.3_shift5 (HOXD9)
; oligos_7nt_mkv2_m1 versus MA0913.3 (HOXD9); m=15/19; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.431185; -----GymATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 1300.0 0.0 16363.0 16363.0 215.0 16363.0 16363.0 16363.0 16363.0 0 0 c 0 0 0 0 0 872.0 9773.0 8643.0 226.0 0.0 8.0 0.0 0.0 2202.0 0 0 g 0 0 0 0 0 16363.0 42.0 675.0 439.0 0.0 0.0 0.0 0.0 1216.0 0 0 t 0 0 0 0 0 655.0 6590.0 927.0 4.0 16363.0 5445.0 123.0 0.0 2194.0 0 0

MA2124.1_rc_shift8 (Hmga1_rc)
; oligos_7nt_mkv2_m1 versus MA2124.1_rc (Hmga1_rc); m=16/19; ncol2=8; w=0; offset=7; strand=R; shift=8; score=0.427058; --------wTAAAAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 c 0 0 0 0 0 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 g 0 0 0 0 0 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 t 0 0 0 0 0 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0

MA1125.2_shift6 (ZNF384)
; oligos_7nt_mkv2_m1 versus MA1125.2 (ZNF384); m=17/19; ncol2=8; w=0; offset=5; strand=D; shift=6; score=0.425839; ------AAAAAAaa-- ; cor=; Ncor= a 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 c 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 g 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 t 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0

MA1473.2_shift5 (CDX4)
; oligos_7nt_mkv2_m1 versus MA1473.2 (CDX4); m=18/19; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.425032; -----GymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 2533.0 0.0 12392.0 23367.0 0.0 23367.0 23367.0 23367.0 23367.0 0 0 c 0 0 0 0 0 1064.0 14682.0 10976.0 0.0 0.0 0.0 0.0 57.0 6493.0 0 0 g 0 0 0 0 0 23367.0 0.0 25.0 0.0 0.0 0.0 0.0 0.0 2168.0 0 0 t 0 0 0 0 0 98.0 8686.0 0.0 0.0 23367.0 0.0 0.0 0.0 4827.0 0 0

MA0040.2_rc_shift7 (Foxq1_rc)
; oligos_7nt_mkv2_m1 versus MA0040.2_rc (Foxq1_rc); m=19/19; ncol2=10; w=0; offset=6; strand=R; shift=7; score=0.413505; -------wATAAACAw ; cor=; Ncor= a 0 0 0 0 0 0 0 9.0 13.0 0.0 18.0 18.0 18.0 0.0 15.0 11.0 c 0 0 0 0 0 0 0 3.0 4.0 1.0 0.0 0.0 0.0 18.0 0.0 0.0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 0 0 6.0 0.0 17.0 0.0 0.0 0.0 0.0 3.0 5.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=15; shift=1; ncol=16; -aaaAtAAATAAAAwa ; Alignment reference a 0 53 57 78 93 25 100 105 105 3 101 102 100 82 39 47 c 0 17 16 9 4 6 5 3 5 12 3 3 5 7 20 22 g 0 19 19 11 5 11 6 6 2 4 5 7 6 8 23 19 t 0 28 25 19 15 75 6 3 5 98 8 5 6 20 35 29
MA0041.3_shift1 (FOXD3)				; oligos_7nt_mkv2_m1 versus MA0041.3 (FOXD3); m=1/19; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.739623; -wawrhAAAYAAACa- ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0
MA0846.2_shift1 (FOXC2)				; oligos_7nt_mkv2_m1 versus MA0846.2 (FOXC2); m=2/19; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.564087; -wAwrTAAAYAw---- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0 0
MA0032.2_shift1 (FOXC1)				; oligos_7nt_mkv2_m1 versus MA0032.2 (FOXC1); m=3/19; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.538955; -wAwRTMAAyAw---- ; cor=; Ncor= a 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 0 0 c 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 0 0 g 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 0 0 t 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0 0 0
MA0757.2_shift0 (ONECUT3)				; oligos_7nt_mkv2_m1 versus MA0757.2 (ONECUT3); m=4/19; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.525123; aAAAATCrATAa---- ; cor=; Ncor= a 3851.0 6080.0 6080.0 6080.0 6080.0 32.0 23.0 3950.0 6080.0 43.0 6080.0 3620.0 0 0 0 0 c 379.0 274.0 173.0 28.0 5.0 103.0 6080.0 20.0 6.0 6.0 105.0 861.0 0 0 0 0 g 1141.0 498.0 112.0 102.0 41.0 14.0 3.0 2130.0 9.0 7.0 187.0 417.0 0 0 0 0 t 709.0 878.0 1221.0 54.0 11.0 6080.0 5.0 11.0 22.0 6080.0 345.0 1182.0 0 0 0 0
MA1487.3_shift0 (FOXE1)				; oligos_7nt_mkv2_m1 versus MA1487.3 (FOXE1); m=5/19; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.520716; yTAARyAAACAa---- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0
MA0847.4_shift0 (FOXD2)				; oligos_7nt_mkv2_m1 versus MA0847.4 (FOXD2); m=6/19; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.48117; yTAAryAAACA----- ; cor=; Ncor= a 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 0 0 0 0 c 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 0 0 0 0 g 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 0 0 0 0 t 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0 0 0 0 0
MA0679.3_shift2 (ONECUT1)				; oligos_7nt_mkv2_m1 versus MA0679.3 (ONECUT1); m=7/19; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.478267; --aAATCAATA----- ; cor=; Ncor= a 0 0 37926.0 52146.0 60015.0 482.0 1345.0 59595.0 60870.0 225.0 48524.0 0 0 0 0 0 c 0 0 7555.0 1011.0 358.0 294.0 60181.0 438.0 247.0 356.0 3451.0 0 0 0 0 0 g 0 0 6149.0 7794.0 1166.0 241.0 278.0 1226.0 366.0 162.0 6072.0 0 0 0 0 0 t 0 0 10589.0 1268.0 680.0 61202.0 415.0 960.0 736.0 61476.0 4172.0 0 0 0 0 0
MA0901.3_shift5 (HOXB13)				; oligos_7nt_mkv2_m1 versus MA0901.3 (HOXB13); m=8/19; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.471199; -----cCAATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 11896.0 4212.0 66409.0 73044.0 421.0 73612.0 75997.0 76077.0 70230.0 0 0 c 0 0 0 0 0 47674.0 65312.0 4611.0 726.0 550.0 523.0 599.0 760.0 2465.0 0 0 g 0 0 0 0 0 9096.0 582.0 351.0 1913.0 586.0 1083.0 490.0 625.0 1882.0 0 0 t 0 0 0 0 0 10048.0 8608.0 7343.0 3031.0 77157.0 3496.0 1628.0 1252.0 4137.0 0 0
MA0851.2_shift4 (Foxj3)				; oligos_7nt_mkv2_m1 versus MA0851.2 (Foxj3); m=9/19; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.468042; ----RTAAACAAw--- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0 0
MA1113.3_shift3 (PBX2)				; oligos_7nt_mkv2_m1 versus MA1113.3 (PBX2); m=10/19; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.460705; ---cATAAATCA---- ; cor=; Ncor= a 0 0 0 4925.0 26620.0 225.0 24368.0 27245.0 27259.0 704.0 2298.0 25945.0 0 0 0 0 c 0 0 0 19645.0 629.0 588.0 2266.0 574.0 754.0 453.0 23894.0 848.0 0 0 0 0 g 0 0 0 1585.0 1710.0 317.0 817.0 343.0 569.0 327.0 555.0 352.0 0 0 0 0 t 0 0 0 3441.0 637.0 28466.0 2145.0 1434.0 1014.0 28112.0 2849.0 2451.0 0 0 0 0
MA1640.2_rc_shift3 (MEIS2_rc)				; oligos_7nt_mkv2_m1 versus MA1640.2_rc (MEIS2_rc); m=11/19; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.448712; ---cATAAATCA---- ; cor=; Ncor= a 0 0 0 3599.0 18144.0 157.0 16167.0 18982.0 18830.0 381.0 1067.0 14420.0 0 0 0 0 c 0 0 0 12862.0 502.0 495.0 1801.0 278.0 499.0 224.0 17326.0 1400.0 0 0 0 0 g 0 0 0 1089.0 1053.0 177.0 582.0 201.0 268.0 207.0 302.0 468.0 0 0 0 0 t 0 0 0 2623.0 474.0 19344.0 1623.0 712.0 576.0 19361.0 1478.0 3885.0 0 0 0 0
MA0899.2_shift5 (HOXA10)				; oligos_7nt_mkv2_m1 versus MA0899.2 (HOXA10); m=12/19; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.442111; -----gymATWAAa-- ; cor=; Ncor= a 0 0 0 0 0 2425.0 153.0 8381.0 8381.0 367.0 5960.0 8381.0 8381.0 8381.0 0 0 c 0 0 0 0 0 1757.0 3867.0 4516.0 455.0 11.0 84.0 36.0 568.0 2082.0 0 0 g 0 0 0 0 0 8381.0 59.0 1022.0 718.0 0.0 121.0 76.0 125.0 1560.0 0 0 t 0 0 0 0 0 1341.0 4515.0 957.0 267.0 8381.0 2422.0 384.0 331.0 2058.0 0 0
MA0650.4_shift1 (Hoxa13)				; oligos_7nt_mkv2_m1 versus MA0650.4 (Hoxa13); m=13/19; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.440228; -CCAATAAA------- ; cor=; Ncor= a 0 1442.0 1273.0 14069.0 15410.0 105.0 15804.0 16813.0 16550.0 0 0 0 0 0 0 0 c 0 12600.0 14100.0 1594.0 243.0 249.0 205.0 125.0 306.0 0 0 0 0 0 0 0 g 0 1889.0 77.0 146.0 666.0 232.0 407.0 98.0 145.0 0 0 0 0 0 0 0 t 0 1317.0 1798.0 1439.0 929.0 16662.0 832.0 212.0 247.0 0 0 0 0 0 0 0
MA0465.3_shift1 (CDX2)				; oligos_7nt_mkv2_m1 versus MA0465.3 (CDX2); m=14/19; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.437374; -GCAATAAA------- ; cor=; Ncor= a 0 3157.0 1226.0 26720.0 29957.0 274.0 29221.0 30645.0 30125.0 0 0 0 0 0 0 0 c 0 2096.0 26587.0 3312.0 414.0 391.0 761.0 349.0 595.0 0 0 0 0 0 0 0 g 0 24214.0 607.0 184.0 1196.0 386.0 999.0 366.0 502.0 0 0 0 0 0 0 0 t 0 2559.0 3606.0 1810.0 459.0 30975.0 1045.0 666.0 804.0 0 0 0 0 0 0 0
MA0913.3_shift5 (HOXD9)				; oligos_7nt_mkv2_m1 versus MA0913.3 (HOXD9); m=15/19; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.431185; -----GymATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 1300.0 0.0 16363.0 16363.0 215.0 16363.0 16363.0 16363.0 16363.0 0 0 c 0 0 0 0 0 872.0 9773.0 8643.0 226.0 0.0 8.0 0.0 0.0 2202.0 0 0 g 0 0 0 0 0 16363.0 42.0 675.0 439.0 0.0 0.0 0.0 0.0 1216.0 0 0 t 0 0 0 0 0 655.0 6590.0 927.0 4.0 16363.0 5445.0 123.0 0.0 2194.0 0 0
MA2124.1_rc_shift8 (Hmga1_rc)				; oligos_7nt_mkv2_m1 versus MA2124.1_rc (Hmga1_rc); m=16/19; ncol2=8; w=0; offset=7; strand=R; shift=8; score=0.427058; --------wTAAAAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 c 0 0 0 0 0 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 g 0 0 0 0 0 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 t 0 0 0 0 0 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0
MA1125.2_shift6 (ZNF384)				; oligos_7nt_mkv2_m1 versus MA1125.2 (ZNF384); m=17/19; ncol2=8; w=0; offset=5; strand=D; shift=6; score=0.425839; ------AAAAAAaa-- ; cor=; Ncor= a 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 c 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 g 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 t 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0
MA1473.2_shift5 (CDX4)				; oligos_7nt_mkv2_m1 versus MA1473.2 (CDX4); m=18/19; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.425032; -----GymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 2533.0 0.0 12392.0 23367.0 0.0 23367.0 23367.0 23367.0 23367.0 0 0 c 0 0 0 0 0 1064.0 14682.0 10976.0 0.0 0.0 0.0 0.0 57.0 6493.0 0 0 g 0 0 0 0 0 23367.0 0.0 25.0 0.0 0.0 0.0 0.0 0.0 2168.0 0 0 t 0 0 0 0 0 98.0 8686.0 0.0 0.0 23367.0 0.0 0.0 0.0 4827.0 0 0
MA0040.2_rc_shift7 (Foxq1_rc)				; oligos_7nt_mkv2_m1 versus MA0040.2_rc (Foxq1_rc); m=19/19; ncol2=10; w=0; offset=6; strand=R; shift=7; score=0.413505; -------wATAAACAw ; cor=; Ncor= a 0 0 0 0 0 0 0 9.0 13.0 0.0 18.0 18.0 18.0 0.0 15.0 11.0 c 0 0 0 0 0 0 0 3.0 4.0 1.0 0.0 0.0 0.0 18.0 0.0 0.0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 0 0 6.0 0.0 17.0 0.0 0.0 0.0 0.0 3.0 5.0