compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files html_index $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html match_table_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html match_table_txt $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab prefix $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf file1 1 12 138 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv2_m4 | MA1961.2 | oligos_7nt_mkv2_m4 | PATZ1 | 0.714 | 0.654 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | R | 0 |
| oligos_7nt_mkv2_m4 | MA1653.2 | oligos_7nt_mkv2_m4 | ZNF148 | 0.781 | 0.651 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 1 |
| oligos_7nt_mkv2_m4 | MA1596.1 | oligos_7nt_mkv2_m4 | ZNF460 | 0.846 | 0.635 | 12 | 16 | 12 | 16 | 0.7500 | 1.0000 | 0.7500 | D | -4 |
| oligos_7nt_mkv2_m4 | MA1630.3 | oligos_7nt_mkv2_m4 | ZNF281 | 0.757 | 0.631 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | R | 1 |
| oligos_7nt_mkv2_m4 | MA1627.2 | oligos_7nt_mkv2_m4 | Wt1 | 0.901 | 0.624 | 12 | 10 | 9 | 13 | 0.6923 | 0.7500 | 0.9000 | D | 3 |
| oligos_7nt_mkv2_m4 | MA0079.5 | oligos_7nt_mkv2_m4 | SP1 | 0.758 | 0.569 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | R | 1 |
| oligos_7nt_mkv2_m4 | MA2099.1 | oligos_7nt_mkv2_m4 | ZNF770 | 0.834 | 0.556 | 12 | 8 | 8 | 12 | 0.6667 | 0.6667 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m4 | MA0685.2 | oligos_7nt_mkv2_m4 | SP4 | 0.723 | 0.542 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | R | 1 |
| oligos_7nt_mkv2_m4 | MA0753.3 | oligos_7nt_mkv2_m4 | ZNF740 | 0.750 | 0.519 | 12 | 10 | 9 | 13 | 0.6923 | 0.7500 | 0.9000 | D | 3 |
| oligos_7nt_mkv2_m4 | MA1522.2 | oligos_7nt_mkv2_m4 | MAZ | 0.758 | 0.505 | 12 | 8 | 8 | 12 | 0.6667 | 0.6667 | 1.0000 | D | 1 |
| oligos_7nt_mkv2_m4 | MA1965.2 | oligos_7nt_mkv2_m4 | SP5 | 0.999 | 0.500 | 12 | 6 | 6 | 12 | 0.5000 | 0.5000 | 1.0000 | D | 3 |
| oligos_7nt_mkv2_m4 | MA0528.3 | oligos_7nt_mkv2_m4 | ZNF263 | 0.840 | 0.490 | 12 | 7 | 7 | 12 | 0.5833 | 0.5833 | 1.0000 | R | 2 |
| oligos_7nt_mkv2_m4 | MA1723.2 | oligos_7nt_mkv2_m4 | PRDM9 | 0.745 | 0.447 | 12 | 20 | 12 | 20 | 0.6000 | 1.0000 | 0.6000 | R | -3 |
| oligos_7nt_mkv2_m4 | MA1578.2 | oligos_7nt_mkv2_m4 | VEZF1 | 0.826 | 0.413 | 12 | 6 | 6 | 12 | 0.5000 | 0.5000 | 1.0000 | D | 6 |
| oligos_7nt_mkv2_m4 | MA1710.2 | oligos_7nt_mkv2_m4 | ZNF257 | 0.873 | 0.407 | 12 | 10 | 7 | 15 | 0.4667 | 0.5833 | 0.7000 | R | -3 |
Host name rsat Job started 2025-05-16.175945 Job done 2025-05-16.175951 Seconds 1.09 user 1.09 system 0.26 cuser 4.35 ; csystem 0.42