One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift2 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=14; shift=2; ncol=16; --wwaaAAATAAAAaa ; Alignment reference a 0 0 73 78 93 115 161 162 161 22 152 153 158 117 78 81 c 0 0 29 26 19 9 2 3 2 15 7 7 4 9 27 33 g 0 0 19 22 24 18 2 4 2 5 6 9 4 21 32 23 t 0 0 50 45 35 29 6 2 6 129 6 2 5 24 34 34

MA0041.3_shift1 (FOXD3)
; oligos_7nt_mkv2_m5 versus MA0041.3 (FOXD3); m=1/15; ncol2=14; w=-1; offset=-1; strand=D; shift=1; score=0.699775; -wawrhAAAYAAACa- ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0

MA0497.2_shift2 (MEF2C)
; oligos_7nt_mkv2_m5 versus MA0497.2 (MEF2C); m=2/15; ncol2=11; w=0; offset=0; strand=D; shift=2; score=0.602246; --cyAAAAATAGm--- ; cor=; Ncor= a 0 0 382.0 0.0 1616.0 1706.0 2107.0 2131.0 2135.0 56.0 2177.0 389.0 975.0 0 0 0 c 0 0 1412.0 985.0 256.0 32.0 0.0 0.0 0.0 62.0 0.0 120.0 836.0 0 0 0 g 0 0 78.0 0.0 74.0 241.0 87.0 2.0 4.0 0.0 32.0 1671.0 148.0 0 0 0 t 0 0 337.0 1224.0 263.0 230.0 15.0 76.0 70.0 2091.0 0.0 29.0 250.0 0 0 0

MA0052.5_shift2 (MEF2A)
; oligos_7nt_mkv2_m5 versus MA0052.5 (MEF2A); m=3/15; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.556764; --cTAAAAATAG---- ; cor=; Ncor= a 0 0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 0 0 0 0 c 0 0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 0 0 0 0 g 0 0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 0 0 0 0 t 0 0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0 0 0 0 0

MA0847.4_shift4 (FOXD2)
; oligos_7nt_mkv2_m5 versus MA0847.4 (FOXD2); m=4/15; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.550363; ----yTAAryAAACA- ; cor=; Ncor= a 0 0 0 0 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 c 0 0 0 0 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 g 0 0 0 0 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 t 0 0 0 0 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0

MA2124.1_rc_shift2 (Hmga1_rc)
; oligos_7nt_mkv2_m5 versus MA2124.1_rc (Hmga1_rc); m=5/15; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.504447; --wTAAAAAT------ ; cor=; Ncor= a 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 0 0 0 0 c 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 0 0 0 0 g 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 0 0 0 0 t 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0 0 0 0 0

MA0901.3_shift5 (HOXB13)
; oligos_7nt_mkv2_m5 versus MA0901.3 (HOXB13); m=6/15; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.492902; -----cCAATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 11896.0 4212.0 66409.0 73044.0 421.0 73612.0 75997.0 76077.0 70230.0 0 0 c 0 0 0 0 0 47674.0 65312.0 4611.0 726.0 550.0 523.0 599.0 760.0 2465.0 0 0 g 0 0 0 0 0 9096.0 582.0 351.0 1913.0 586.0 1083.0 490.0 625.0 1882.0 0 0 t 0 0 0 0 0 10048.0 8608.0 7343.0 3031.0 77157.0 3496.0 1628.0 1252.0 4137.0 0 0

MA1125.2_shift7 (ZNF384)
; oligos_7nt_mkv2_m5 versus MA1125.2 (ZNF384); m=7/15; ncol2=8; w=0; offset=5; strand=D; shift=7; score=0.483047; -------AAAAAAaa- ; cor=; Ncor= a 0 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 c 0 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 g 0 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 t 0 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0

MA0846.2_shift1 (FOXC2)
; oligos_7nt_mkv2_m5 versus MA0846.2 (FOXC2); m=8/15; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.480167; -wAwrTAAAYAw---- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0 0

MA0899.2_shift5 (HOXA10)
; oligos_7nt_mkv2_m5 versus MA0899.2 (HOXA10); m=9/15; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.465526; -----gymATWAAa-- ; cor=; Ncor= a 0 0 0 0 0 2425.0 153.0 8381.0 8381.0 367.0 5960.0 8381.0 8381.0 8381.0 0 0 c 0 0 0 0 0 1757.0 3867.0 4516.0 455.0 11.0 84.0 36.0 568.0 2082.0 0 0 g 0 0 0 0 0 8381.0 59.0 1022.0 718.0 0.0 121.0 76.0 125.0 1560.0 0 0 t 0 0 0 0 0 1341.0 4515.0 957.0 267.0 8381.0 2422.0 384.0 331.0 2058.0 0 0

MA0851.2_shift4 (Foxj3)
; oligos_7nt_mkv2_m5 versus MA0851.2 (Foxj3); m=10/15; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.457648; ----RTAAACAAw--- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0 0

MA1487.3_shift0 (FOXE1)
; oligos_7nt_mkv2_m5 versus MA1487.3 (FOXE1); m=11/15; ncol2=12; w=-2; offset=-2; strand=D; shift=0; score=0.454288; yTAARyAAACAa---- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0

MA0913.3_shift5 (HOXD9)
; oligos_7nt_mkv2_m5 versus MA0913.3 (HOXD9); m=12/15; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.451724; -----GymATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 1300.0 0.0 16363.0 16363.0 215.0 16363.0 16363.0 16363.0 16363.0 0 0 c 0 0 0 0 0 872.0 9773.0 8643.0 226.0 0.0 8.0 0.0 0.0 2202.0 0 0 g 0 0 0 0 0 16363.0 42.0 675.0 439.0 0.0 0.0 0.0 0.0 1216.0 0 0 t 0 0 0 0 0 655.0 6590.0 927.0 4.0 16363.0 5445.0 123.0 0.0 2194.0 0 0

MA0040.2_rc_shift7 (Foxq1_rc)
; oligos_7nt_mkv2_m5 versus MA0040.2_rc (Foxq1_rc); m=13/15; ncol2=10; w=0; offset=5; strand=R; shift=7; score=0.449716; -------wATAAACAw ; cor=; Ncor= a 0 0 0 0 0 0 0 9.0 13.0 0.0 18.0 18.0 18.0 0.0 15.0 11.0 c 0 0 0 0 0 0 0 3.0 4.0 1.0 0.0 0.0 0.0 18.0 0.0 0.0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 0 0 6.0 0.0 17.0 0.0 0.0 0.0 0.0 3.0 5.0

MA0465.3_shift5 (CDX2)
; oligos_7nt_mkv2_m5 versus MA0465.3 (CDX2); m=14/15; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.416771; -----GCAATAAA--- ; cor=; Ncor= a 0 0 0 0 0 3157.0 1226.0 26720.0 29957.0 274.0 29221.0 30645.0 30125.0 0 0 0 c 0 0 0 0 0 2096.0 26587.0 3312.0 414.0 391.0 761.0 349.0 595.0 0 0 0 g 0 0 0 0 0 24214.0 607.0 184.0 1196.0 386.0 999.0 366.0 502.0 0 0 0 t 0 0 0 0 0 2559.0 3606.0 1810.0 459.0 30975.0 1045.0 666.0 804.0 0 0 0

MA0650.4_shift5 (Hoxa13)
; oligos_7nt_mkv2_m5 versus MA0650.4 (Hoxa13); m=15/15; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.416384; -----CCAATAAA--- ; cor=; Ncor= a 0 0 0 0 0 1442.0 1273.0 14069.0 15410.0 105.0 15804.0 16813.0 16550.0 0 0 0 c 0 0 0 0 0 12600.0 14100.0 1594.0 243.0 249.0 205.0 125.0 306.0 0 0 0 g 0 0 0 0 0 1889.0 77.0 146.0 666.0 232.0 407.0 98.0 145.0 0 0 0 t 0 0 0 0 0 1317.0 1798.0 1439.0 929.0 16662.0 832.0 212.0 247.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=14; shift=2; ncol=16; --wwaaAAATAAAAaa ; Alignment reference a 0 0 73 78 93 115 161 162 161 22 152 153 158 117 78 81 c 0 0 29 26 19 9 2 3 2 15 7 7 4 9 27 33 g 0 0 19 22 24 18 2 4 2 5 6 9 4 21 32 23 t 0 0 50 45 35 29 6 2 6 129 6 2 5 24 34 34
MA0041.3_shift1 (FOXD3)				; oligos_7nt_mkv2_m5 versus MA0041.3 (FOXD3); m=1/15; ncol2=14; w=-1; offset=-1; strand=D; shift=1; score=0.699775; -wawrhAAAYAAACa- ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0
MA0497.2_shift2 (MEF2C)				; oligos_7nt_mkv2_m5 versus MA0497.2 (MEF2C); m=2/15; ncol2=11; w=0; offset=0; strand=D; shift=2; score=0.602246; --cyAAAAATAGm--- ; cor=; Ncor= a 0 0 382.0 0.0 1616.0 1706.0 2107.0 2131.0 2135.0 56.0 2177.0 389.0 975.0 0 0 0 c 0 0 1412.0 985.0 256.0 32.0 0.0 0.0 0.0 62.0 0.0 120.0 836.0 0 0 0 g 0 0 78.0 0.0 74.0 241.0 87.0 2.0 4.0 0.0 32.0 1671.0 148.0 0 0 0 t 0 0 337.0 1224.0 263.0 230.0 15.0 76.0 70.0 2091.0 0.0 29.0 250.0 0 0 0
MA0052.5_shift2 (MEF2A)				; oligos_7nt_mkv2_m5 versus MA0052.5 (MEF2A); m=3/15; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.556764; --cTAAAAATAG---- ; cor=; Ncor= a 0 0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 0 0 0 0 c 0 0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 0 0 0 0 g 0 0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 0 0 0 0 t 0 0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0 0 0 0 0
MA0847.4_shift4 (FOXD2)				; oligos_7nt_mkv2_m5 versus MA0847.4 (FOXD2); m=4/15; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.550363; ----yTAAryAAACA- ; cor=; Ncor= a 0 0 0 0 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 c 0 0 0 0 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 g 0 0 0 0 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 t 0 0 0 0 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0
MA2124.1_rc_shift2 (Hmga1_rc)				; oligos_7nt_mkv2_m5 versus MA2124.1_rc (Hmga1_rc); m=5/15; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.504447; --wTAAAAAT------ ; cor=; Ncor= a 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 0 0 0 0 c 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 0 0 0 0 g 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 0 0 0 0 t 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0 0 0 0 0
MA0901.3_shift5 (HOXB13)				; oligos_7nt_mkv2_m5 versus MA0901.3 (HOXB13); m=6/15; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.492902; -----cCAATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 11896.0 4212.0 66409.0 73044.0 421.0 73612.0 75997.0 76077.0 70230.0 0 0 c 0 0 0 0 0 47674.0 65312.0 4611.0 726.0 550.0 523.0 599.0 760.0 2465.0 0 0 g 0 0 0 0 0 9096.0 582.0 351.0 1913.0 586.0 1083.0 490.0 625.0 1882.0 0 0 t 0 0 0 0 0 10048.0 8608.0 7343.0 3031.0 77157.0 3496.0 1628.0 1252.0 4137.0 0 0
MA1125.2_shift7 (ZNF384)				; oligos_7nt_mkv2_m5 versus MA1125.2 (ZNF384); m=7/15; ncol2=8; w=0; offset=5; strand=D; shift=7; score=0.483047; -------AAAAAAaa- ; cor=; Ncor= a 0 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 c 0 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 g 0 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 t 0 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0
MA0846.2_shift1 (FOXC2)				; oligos_7nt_mkv2_m5 versus MA0846.2 (FOXC2); m=8/15; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.480167; -wAwrTAAAYAw---- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0 0
MA0899.2_shift5 (HOXA10)				; oligos_7nt_mkv2_m5 versus MA0899.2 (HOXA10); m=9/15; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.465526; -----gymATWAAa-- ; cor=; Ncor= a 0 0 0 0 0 2425.0 153.0 8381.0 8381.0 367.0 5960.0 8381.0 8381.0 8381.0 0 0 c 0 0 0 0 0 1757.0 3867.0 4516.0 455.0 11.0 84.0 36.0 568.0 2082.0 0 0 g 0 0 0 0 0 8381.0 59.0 1022.0 718.0 0.0 121.0 76.0 125.0 1560.0 0 0 t 0 0 0 0 0 1341.0 4515.0 957.0 267.0 8381.0 2422.0 384.0 331.0 2058.0 0 0
MA0851.2_shift4 (Foxj3)				; oligos_7nt_mkv2_m5 versus MA0851.2 (Foxj3); m=10/15; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.457648; ----RTAAACAAw--- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0 0
MA1487.3_shift0 (FOXE1)				; oligos_7nt_mkv2_m5 versus MA1487.3 (FOXE1); m=11/15; ncol2=12; w=-2; offset=-2; strand=D; shift=0; score=0.454288; yTAARyAAACAa---- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0
MA0913.3_shift5 (HOXD9)				; oligos_7nt_mkv2_m5 versus MA0913.3 (HOXD9); m=12/15; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.451724; -----GymATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 1300.0 0.0 16363.0 16363.0 215.0 16363.0 16363.0 16363.0 16363.0 0 0 c 0 0 0 0 0 872.0 9773.0 8643.0 226.0 0.0 8.0 0.0 0.0 2202.0 0 0 g 0 0 0 0 0 16363.0 42.0 675.0 439.0 0.0 0.0 0.0 0.0 1216.0 0 0 t 0 0 0 0 0 655.0 6590.0 927.0 4.0 16363.0 5445.0 123.0 0.0 2194.0 0 0
MA0040.2_rc_shift7 (Foxq1_rc)				; oligos_7nt_mkv2_m5 versus MA0040.2_rc (Foxq1_rc); m=13/15; ncol2=10; w=0; offset=5; strand=R; shift=7; score=0.449716; -------wATAAACAw ; cor=; Ncor= a 0 0 0 0 0 0 0 9.0 13.0 0.0 18.0 18.0 18.0 0.0 15.0 11.0 c 0 0 0 0 0 0 0 3.0 4.0 1.0 0.0 0.0 0.0 18.0 0.0 0.0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 0 0 6.0 0.0 17.0 0.0 0.0 0.0 0.0 3.0 5.0
MA0465.3_shift5 (CDX2)				; oligos_7nt_mkv2_m5 versus MA0465.3 (CDX2); m=14/15; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.416771; -----GCAATAAA--- ; cor=; Ncor= a 0 0 0 0 0 3157.0 1226.0 26720.0 29957.0 274.0 29221.0 30645.0 30125.0 0 0 0 c 0 0 0 0 0 2096.0 26587.0 3312.0 414.0 391.0 761.0 349.0 595.0 0 0 0 g 0 0 0 0 0 24214.0 607.0 184.0 1196.0 386.0 999.0 366.0 502.0 0 0 0 t 0 0 0 0 0 2559.0 3606.0 1810.0 459.0 30975.0 1045.0 666.0 804.0 0 0 0
MA0650.4_shift5 (Hoxa13)				; oligos_7nt_mkv2_m5 versus MA0650.4 (Hoxa13); m=15/15; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.416384; -----CCAATAAA--- ; cor=; Ncor= a 0 0 0 0 0 1442.0 1273.0 14069.0 15410.0 105.0 15804.0 16813.0 16550.0 0 0 0 c 0 0 0 0 0 12600.0 14100.0 1594.0 243.0 249.0 205.0 125.0 306.0 0 0 0 g 0 0 0 0 0 1889.0 77.0 146.0 666.0 232.0 407.0 98.0 145.0 0 0 0 t 0 0 0 0 0 1317.0 1798.0 1439.0 929.0 16662.0 832.0 212.0 247.0 0 0 0