/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	11	165
		file1	2	14	125
		file1	3	11	109
		file1	4	12	114
		file1	5	13	93
		file1	6	15	117
		file1	7	14	76
		file1	8	13	126
		file1	9	12	138
		file1	10	14	171
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175823_2025-05-16.175823_YJjJog/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		11		165
		file2		2		14		125
		file2		3		11		109
		file2		4		12		114
		file2		5		13		93
		file2		6		15		117
		file2		7		14		76
		file2		8		13		126
		file2		9		12		138
		file2		10		14		171
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 0.945 0.945 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 0.945 0.945 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 0.981 0.916 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 0.981 0.916 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 0.956 0.876 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 0.956 0.876 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 0.930 0.868 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 0.930 0.868 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 0.933 0.800 13 13 12 14 0.8571 0.9231 0.9231 D -1
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 0.933 0.800 13 13 12 14 0.8571 0.9231 0.9231 D 1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 0.951 0.747 14 11 11 14 0.7857 0.7857 1.0000 D 3
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 0.951 0.747 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 0.740 0.416 12 13 9 16 0.5625 0.7500 0.6923 R -4
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 0.740 0.416 13 12 9 16 0.5625 0.6923 0.7500 R -3 
 Host name	rsat
 Job started	2025-05-16.175844
 Job done	2025-05-16.175849
 Seconds	0.26
	user	0.26
	system	0.18
	cuser	4.28
;	csystem	0.64