peak-motifs Oligodendrocyte_precursor_cells_control_MDD

Motif discovery

Motif 1 oligos_6nt_mkv2_m1

k-mer sig=6.61; evalue=2.5e-07

cbgCCTCCCys

SRGGGAGGCVG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cbgCCTCCCys

ZNF148 MA1653.2 D 10 0.9091 0.830 0.754 NA NA

PATZ1 MA1961.2 R 11 1.0000 0.746 0.746 NA NA

ZNF281 MA1630.3 R 10 0.9091 0.765 0.695 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (33.33%)
Max nb of predicted sites per peak: 5
(chr21:8212969-8213431)
Mean nb of predicted sites per peak: 1.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv2_m2

k-mer sig=5.96; evalue=1.1e-06

wwatAAATAAAawa

TWTTTTATTTATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatAAATAAAawa

FOXD3 MA0041.3 D 13 0.8667 0.831 0.720 NA NA

FOXE1 MA1487.3 D 12 0.8571 0.722 0.619 NA NA

FOXD2 MA0847.4 D 11 0.7857 0.732 0.576 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 27 (40.91%)
Max nb of predicted sites per peak: 10
(chr1:40204551-40205397)
Mean nb of predicted sites per peak: 2.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv2_m3

k-mer sig=5.38; evalue=4.2e-06

raATGAATGah

DTCATTCATTY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor raATGAATGah

ZNF24 MA1124.1 R 11 0.8462 0.879 0.744 NA NA

Arid3b MA0601.2 D 7 0.6364 0.706 0.449 NA NA

HOXB4 MA1499.2 R 6 0.5455 0.755 0.412 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (33.33%)
Max nb of predicted sites per peak: 4
(chr12:124745147-124746497)
Mean nb of predicted sites per peak: 1.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv2_m4

k-mer sig=2.76; evalue=0.0017

sscCGCCGCGss

SSCGCGGCGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sscCGCCGCGss

ZNF610 MA1713.2 D 10 0.8333 0.740 0.617 NA NA

ZBED4 MA2328.1 D 10 0.8333 0.706 0.588 NA NA

SP2 MA0516.3 R 9 0.7500 0.710 0.533 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (13.64%)
Max nb of predicted sites per peak: 28
(chr21:8212969-8213431)
Mean nb of predicted sites per peak: 9.89

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv2_m5

k-mer sig=2.68; evalue=0.0021

ssAGGCTGGGcmg

CKGCCCAGCCTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssAGGCTGGGcmg

ZNF213 MA2121.1 R 11 0.7857 0.796 0.625 NA NA

FEZF2 MA2341.1 R 8 0.6154 0.991 0.610 NA NA

ZNF449 MA1656.2 R 10 0.7692 0.764 0.588 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 20 (30.30%)
Max nb of predicted sites per peak: 4
(chr7:98807033-98808003)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv2_m1

k-mer sig=9.12; evalue=7.6e-10

aaaAtAAATAAAAwa

TWTTTTATTTATTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaaAtAAATAAAAwa

FOXD3 MA0041.3 D 14 0.9333 0.792 0.740 NA NA

FOXC2 MA0846.2 D 11 0.7333 0.769 0.564 NA NA

FOXC1 MA0032.2 D 11 0.7333 0.735 0.539 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (42.42%)
Max nb of predicted sites per peak: 10
(chr1:40204551-40205397)
Mean nb of predicted sites per peak: 2.46

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv2_m2

k-mer sig=5.23; evalue=5.9e-06

rwtgAATGAATGra

TYCATTCATTCAWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwtgAATGAATGra

ZNF24 MA1124.1 R 12 0.8000 0.910 0.728 NA NA

NKX6-3 MA1530.2 R 8 0.5714 0.709 0.405 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 18 (27.27%)
Max nb of predicted sites per peak: 10
(chr12:124745147-124746497)
Mean nb of predicted sites per peak: 2.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv2_m3

k-mer sig=2.33; evalue=0.0047

sssAGGCTGGggb

VCCCCAGCCTSSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sssAGGCTGGggb

ZNF460 MA1596.1 R 13 0.8125 0.754 0.613 NA NA

FEZF2 MA2341.1 R 8 0.6154 0.985 0.606 NA NA

Zfp809 MA2125.1 R 9 0.6923 0.840 0.582 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24 (36.36%)
Max nb of predicted sites per peak: 2
(chr9:128920217-128921178)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv2_m4

k-mer sig=2.25; evalue=0.0056

cyGCCTCCCCmm

KKGGGGAGGCRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyGCCTCCCCmm

PATZ1 MA1961.2 R 11 0.9167 0.714 0.654 NA NA

ZNF148 MA1653.2 D 10 0.8333 0.781 0.651 NA NA

ZNF460 MA1596.1 D 12 0.7500 0.846 0.635 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 21 (31.82%)
Max nb of predicted sites per peak: 4
(chr21:8212969-8213431)
Mean nb of predicted sites per peak: 1.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv2_m5

k-mer sig=9.12; evalue=7.6e-10

wwaaAAATAAAAaa

TTTTTTATTTTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwaaAAATAAAAaa

FOXD3 MA0041.3 D 13 0.8667 0.807 0.700 NA NA

MEF2C MA0497.2 D 11 0.7857 0.766 0.602 NA NA

MEF2A MA0052.5 D 10 0.7143 0.779 0.557 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (45.45%)
Max nb of predicted sites per peak: 31
(chr15:71850397-71851174)
Mean nb of predicted sites per peak: 4.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Oligodendrocyte_precursor_cells_control_MDD_up (16/05/2025 18:01)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwtgAATGAATGra

ZNF24 MA1124.1 R 12 0.8000 0.910 0.728 NA NA

NKX6-3 MA1530.2 R 8 0.5714 0.709 0.405 NA NA

Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: Oligodendrocyte_precursor_cells_control_MDD_up (16/05/2025 18:01)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rwtgAATGAATGra ZNF24 MA1124.1 R 12 0.8000 0.910 0.728 NA NA NKX6-3 MA1530.2 R 8 0.5714 0.709 0.405 NA NA Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwtgAATGAATGra

ZNF24 MA1124.1 R 12 0.8000 0.910 0.728 NA NA

NKX6-3 MA1530.2 R 8 0.5714 0.709 0.405 NA NA

Total matches= 2