; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	0	2	5	0	5	0	0	0	0	2	1
c	0	3	0	5	0	0	0	0	0	1	1
g	2	0	0	0	0	5	5	0	5	1	2
t	3	0	0	0	0	0	0	5	0	1	1
//
; Sites	5
>site_0
TCACAGGTGAC
>site_1
GAACAGGTGGT
>site_2
TCACAGGTGTG
>site_3
GCACAGGTGAG
>site_4
TAACAGGTGCA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	0	1	0	0	0	0	0	4	4	1	1
c	3	0	5	0	0	5	0	0	1	2	1
g	1	2	0	5	5	0	5	0	0	1	1
t	1	2	0	0	0	0	0	1	0	1	2
//
; Sites	5
>site_0
CTCGGCGACGA
>site_1
CTCGGCGAATG
>site_2
TGCGGCGAACT
>site_3
GGCGGCGAAAC
>site_4
CACGGCGTACT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
; Host name	rsat
; Job started	2025-05-16.175908
; Job done	2025-05-16.175909
; Seconds	0.13
;	user	0.13
;	system	0.03
;	cuser	0.46
;	csystem	0.09
