/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	3 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175855_2025-05-16.175855_ID8f2H/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	10
		file1	2	11	5
		file1	3	11	5
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv1_m1 MA1559.2 oligos_7nt_mkv1_m1 SNAI3 0.924 0.756 11 9 9 11 0.8182 0.8182 1.0000 D 2
oligos_7nt_mkv1_m1 MA0499.3 oligos_7nt_mkv1_m1 MYOD1 0.904 0.739 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv1_m1 MA0745.3 oligos_7nt_mkv1_m1 SNAI2 0.968 0.704 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv1_m1 MA1620.2 oligos_7nt_mkv1_m1 Ptf1A 0.946 0.688 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv1_m1 MA0783.1 oligos_7nt_mkv1_m1 PKNOX2 0.728 0.668 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv1_m1 MA0665.1 oligos_7nt_mkv1_m1 MSC 0.726 0.660 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv1_m1 MA0691.1 oligos_7nt_mkv1_m1 TFAP4 0.715 0.650 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv1_m1 MA0667.1 oligos_7nt_mkv1_m1 MYF6 0.711 0.646 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv1_m1 MA1570.1 oligos_7nt_mkv1_m1 TFAP4 0.701 0.637 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv1_m1 MA1631.2 oligos_7nt_mkv1_m1 ASCL1 0.768 0.628 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv1_m1 MA0743.3 oligos_7nt_mkv1_m1 SCRT1 0.835 0.627 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_7nt_mkv1_m1 MA1618.2 oligos_7nt_mkv1_m1 Ptf1A 0.755 0.618 11 9 9 11 0.8182 0.8182 1.0000 D 2
oligos_7nt_mkv1_m1 MA0744.3 oligos_7nt_mkv1_m1 SCRT2 0.816 0.612 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_7nt_mkv1_m1 MA0830.3 oligos_7nt_mkv1_m1 TCF4 0.841 0.611 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv1_m1 MA1485.1 oligos_7nt_mkv1_m1 FERD3L 0.743 0.584 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_7nt_mkv1_m1 MA1558.2 oligos_7nt_mkv1_m1 SNAI1 0.916 0.583 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m1 MA1619.2 oligos_7nt_mkv1_m1 Ptf1A 0.769 0.559 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv1_m1 MA1105.3 oligos_7nt_mkv1_m1 GRHL2 0.764 0.555 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv1_m1 MA1641.2 oligos_7nt_mkv1_m1 MYF5 0.762 0.554 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m1 MA0626.2 oligos_7nt_mkv1_m1 Npas2 0.759 0.552 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv1_m1 MA1472.3 oligos_7nt_mkv1_m1 Bhlha15 0.758 0.551 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m1 MA0664.2 oligos_7nt_mkv1_m1 MLXIPL 0.755 0.549 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv1_m1 MA0103.4 oligos_7nt_mkv1_m1 ZEB1 1.000 0.545 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m1 MA1464.2 oligos_7nt_mkv1_m1 ARNT2 0.744 0.541 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv1_m1 MA0668.3 oligos_7nt_mkv1_m1 Neurod2 0.743 0.540 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m1 MA0820.2 oligos_7nt_mkv1_m1 FIGLA 0.986 0.538 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m1 MA0603.2 oligos_7nt_mkv1_m1 Arntl 0.738 0.536 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv1_m1 MA1109.2 oligos_7nt_mkv1_m1 NEUROD1 0.735 0.535 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m1 MA1100.3 oligos_7nt_mkv1_m1 ASCL1 0.735 0.535 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m1 MA0692.2 oligos_7nt_mkv1_m1 TFEB 0.729 0.530 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_7nt_mkv1_m1 MA0806.1 oligos_7nt_mkv1_m1 TBX4 0.902 0.526 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv1_m1 MA0807.1 oligos_7nt_mkv1_m1 TBX5 0.902 0.526 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv1_m1 MA1648.2 oligos_7nt_mkv1_m1 TCF12 0.813 0.517 11 7 7 11 0.6364 0.6364 1.0000 R 2
oligos_7nt_mkv1_m1 MA0500.3 oligos_7nt_mkv1_m1 MYOG 0.708 0.515 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv1_m1 MA0522.4 oligos_7nt_mkv1_m1 TCF3 0.808 0.514 11 7 7 11 0.6364 0.6364 1.0000 R 2
oligos_7nt_mkv1_m1 MA0871.3 oligos_7nt_mkv1_m1 TFEC 0.706 0.514 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_7nt_mkv1_m1 MA0803.1 oligos_7nt_mkv1_m1 TBX15 0.877 0.512 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv1_m1 MA0819.3 oligos_7nt_mkv1_m1 CLOCK 0.793 0.505 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m1 MA0805.1 oligos_7nt_mkv1_m1 TBX1 0.863 0.503 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv1_m1 MA0801.1 oligos_7nt_mkv1_m1 MGA 0.852 0.497 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv1_m1 MA1565.2 oligos_7nt_mkv1_m1 TBX18 0.899 0.484 11 9 7 13 0.5385 0.6364 0.7778 D 4
oligos_7nt_mkv1_m1 MA0688.2 oligos_7nt_mkv1_m1 TBX2 0.884 0.476 11 9 7 13 0.5385 0.6364 0.7778 D 4
oligos_7nt_mkv1_m1 MA0802.2 oligos_7nt_mkv1_m1 TBR1 0.882 0.475 11 9 7 13 0.5385 0.6364 0.7778 D 4
oligos_7nt_mkv1_m1 MA1566.3 oligos_7nt_mkv1_m1 TBX3 0.881 0.475 11 9 7 13 0.5385 0.6364 0.7778 D 4
oligos_7nt_mkv1_m1 MA1642.2 oligos_7nt_mkv1_m1 NEUROG2 0.735 0.468 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_7nt_mkv1_m1 MA0800.2 oligos_7nt_mkv1_m1 EOMES 0.868 0.467 11 9 7 13 0.5385 0.6364 0.7778 D 4
oligos_7nt_mkv1_m1 MA1467.3 oligos_7nt_mkv1_m1 Atoh1 0.729 0.464 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_7nt_mkv1_m1 MA1941.2 oligos_7nt_mkv1_m1 ETV2::FIGLA 0.766 0.460 11 13 9 15 0.6000 0.8182 0.6923 D -4
oligos_7nt_mkv1_m1 MA0690.3 oligos_7nt_mkv1_m1 TBX21 0.736 0.453 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv1_m1 MA1567.3 oligos_7nt_mkv1_m1 Tbx6 0.837 0.451 11 9 7 13 0.5385 0.6364 0.7778 D 4
oligos_7nt_mkv1_m1 MA1934.2 oligos_7nt_mkv1_m1 ERF::FIGLA 0.858 0.429 11 13 8 16 0.5000 0.7273 0.6154 R 3
oligos_7nt_mkv1_m1 MA0521.3 oligos_7nt_mkv1_m1 Tcf12 0.786 0.429 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA1108.3 oligos_7nt_mkv1_m1 MXI1 0.783 0.427 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m1 MA0058.4 oligos_7nt_mkv1_m1 MAX 0.783 0.427 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m1 MA1635.2 oligos_7nt_mkv1_m1 BHLHE22 0.778 0.425 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA0622.2 oligos_7nt_mkv1_m1 Mlxip 0.778 0.424 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA0825.2 oligos_7nt_mkv1_m1 MNT 0.778 0.424 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA1993.2 oligos_7nt_mkv1_m1 Neurod2 0.776 0.423 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA0633.3 oligos_7nt_mkv1_m1 Twist2 0.776 0.423 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA1997.2 oligos_7nt_mkv1_m1 Olig2 0.775 0.423 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA0100.4 oligos_7nt_mkv1_m1 MYB 0.771 0.421 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m1 MA1638.2 oligos_7nt_mkv1_m1 HAND2 0.771 0.420 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA0768.3 oligos_7nt_mkv1_m1 Lef1 0.720 0.420 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_7nt_mkv1_m1 MA0774.1 oligos_7nt_mkv1_m1 MEIS2 0.717 0.418 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv1_m1 MA1945.2 oligos_7nt_mkv1_m1 ETV5::FIGLA 0.737 0.415 11 14 9 16 0.5625 0.8182 0.6429 D -5
oligos_7nt_mkv1_m1 MA0004.1 oligos_7nt_mkv1_m1 Arnt 0.758 0.413 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m1 MA0689.1 oligos_7nt_mkv1_m1 TBX20 0.722 0.413 11 11 8 14 0.5714 0.7273 0.7273 D 3 
 Host name	rsat
 Job started	2025-05-16.175957
 Job done	2025-05-16.180042
 Seconds	7.57
	user	7.58
	system	1.87
	cuser	32.98
;	csystem	2.71