; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	0	1	0	0	0	0	0	4	1	3
c	1	0	4	0	0	0	0	0	2	0
g	2	2	0	4	4	4	4	0	1	1
t	1	1	0	0	0	0	0	0	0	0
//
; Sites	4
>site_0
TTCGGGGACA
>site_1
GGCGGGGAAG
>site_2
GGCGGGGAGA
>site_3
CACGGGGACA
a	2	0	0	0	0	0	0	0	1	2
c	0	5	6	0	0	6	6	6	4	2
g	2	1	0	0	0	0	0	0	0	1
t	2	0	0	6	6	0	0	0	1	1
//
; Sites	6
>site_0
TCCTTCCCCC
>site_1
TCCTTCCCCC
>site_2
GCCTTCCCCA
>site_3
GCCTTCCCCG
>site_4
AGCTTCCCAT
>site_5
ACCTTCCCTA
a	1	0	5	0	0	0	0	0	1	3
c	4	3	0	0	0	0	0	0	3	2
g	0	0	0	4	0	5	0	5	0	0
t	0	2	0	1	5	0	5	0	1	0
//
; Sites	5
>site_0
CTAGTGTGCC
>site_1
CCAGTGTGTA
>site_2
CCAGTGTGCA
>site_3
CCAGTGTGCA
>site_4
ATATTGTGAC
a	1	2	0	0	1	0	0	0	2	0
c	3	3	5	5	0	5	5	5	0	1
g	0	0	0	0	4	0	0	0	1	3
t	1	0	0	0	0	0	0	0	2	1
//
; Sites	5
>site_0
CACCGCCCTG
>site_1
CCCCGCCCAG
>site_2
ACCCGCCCAG
>site_3
TACCACCCGC
>site_4
CCCCGCCCTT
; Host name	rsat
; Job started	2025-05-16.175936
; Job done	2025-05-16.175936
; Seconds	0.12
;	user	0.12
;	system	0.01
;	cuser	0
;	csystem	0
