; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	3	1	0	0	0	0	0	0	0	0	2	2
c	0	0	5	5	0	0	5	5	5	4	2	1
g	0	2	0	0	0	0	0	0	0	0	1	1
t	2	2	0	0	5	5	0	0	0	1	0	1
//
; Sites	5
>site_0
ATCCTTCCCCCA
>site_1
ATCCTTCCCCCA
>site_2
AGCCTTCCCCAT
>site_3
TGCCTTCCCCGC
>site_4
TACCTTCCCTAG
a	0	0	3	0	0	0	0	0	0	2	1
c	3	2	0	0	0	0	0	0	3	1	2
g	0	0	0	3	0	3	0	3	0	0	0
t	0	1	0	0	3	0	3	0	0	0	0
//
; Sites	3
>site_0
CTAGTGTGCCC
>site_1
CCAGTGTGCAA
>site_2
CCAGTGTGCAC
a	3	0	7	0	8	0	0	1	0	1	3	0	5
c	0	6	0	9	0	9	0	0	0	0	0	3	1
g	4	2	0	0	0	0	1	8	9	8	5	4	2
t	2	1	2	0	1	0	8	0	0	0	1	2	1
//
; Sites	9
>site_0
GCACACTAGGAGG
>site_1
ACACACTGGGGTG
>site_2
GCTCACTGGGGGC
>site_3
GCACACTGGGGGA
>site_4
GCACACTGGGGGA
>site_5
TGACACTGGAGCA
>site_6
TCACTCTGGGTCA
>site_7
ATTCACTGGGATT
>site_8
AGACACGGGGACA
a	1	2	0	0	0	0	0	0	0	3	0
c	1	2	4	4	4	0	3	4	4	0	0
g	0	0	0	0	0	4	1	0	0	0	3
t	2	0	0	0	0	0	0	0	0	1	1
//
; Sites	4
>site_0
TCCCCGCCCAG
>site_1
CACCCGCCCAG
>site_2
TCCCCGCCCTT
>site_3
AACCCGGCCAG
a	0	1	2	2	0	0	0	2	2	0	1
c	0	0	0	0	0	0	0	0	0	1	1
g	2	1	0	0	2	2	0	0	0	0	0
t	0	0	0	0	0	0	2	0	0	1	0
//
; Sites	2
>site_0
GAAAGGTAATC
>site_1
GGAAGGTAACA
; Host name	rsat
; Job started	2025-05-16.175939
; Job done	2025-05-16.175939
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0
;	csystem	0
