# One-to-n alignments

    Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

## One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m3_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_mkv1_m3_shift2 (oligos_7nt_mkv1_m3) |  |  |  |
    ; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=13; shift=2; ncol=15; --rcACACTGGGrsa
    ; Alignment reference
    a	0	0	3	0	7	0	8	0	0	1	0	1	3	0	5
    c	0	0	0	6	0	9	0	9	0	0	0	0	0	3	1
    g	0	0	4	2	0	0	0	0	1	8	9	8	5	4	2
    t	0	0	2	1	2	0	1	0	8	0	0	0	1	2	1
oligos_7nt_mkv1_m3_shift2 (oligos_7nt_mkv1_m3) |  |  |  |
    ; oligos_7nt_mkv1_m3 versus oligos_7nt_mkv1_m3; m=1/3; ncol2=13; w=0; offset=0; strand=D; shift=2; score=      1; --rcACACTGGGrsa
    ; cor=; Ncor=
    a	0	0	3	0	7	0	8	0	0	1	0	1	3	0	5
    c	0	0	0	6	0	9	0	9	0	0	0	0	0	3	1
    g	0	0	4	2	0	0	0	0	1	8	9	8	5	4	2
    t	0	0	2	1	2	0	1	0	8	0	0	0	1	2	1
oligos_6nt_mkv1_m3_rc_shift1 (oligos_6nt_mkv1_m3_rc) |  |  |  |
    ; oligos_7nt_mkv1_m3 versus oligos_6nt_mkv1_m3_rc; m=2/3; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.597808; -kgCACACTrG----
    ; cor=; Ncor=
    a	0	0	1	0	5	0	5	1	0	2	0	0	0	0	0
    c	0	0	0	5	0	5	0	4	0	0	0	0	0	0	0
    g	0	2	3	0	0	0	0	0	0	3	4	0	0	0	0
    t	0	3	1	0	0	0	0	0	5	0	1	0	0	0	0
oligos_7nt_mkv1_m2_rc_shift0 (oligos_7nt_mkv1_m2_rc) |  |  |  |
    ; oligos_7nt_mkv1_m3 versus oligos_7nt_mkv1_m2_rc; m=3/3; ncol2=11; w=-2; offset=-2; strand=R; shift=0; score=0.557607; kkGCACACTrG----
    ; cor=; Ncor=
    a	0	0	0	0	3	0	3	0	0	1	0	0	0	0	0
    c	0	0	0	3	0	3	0	3	0	0	0	0	0	0	0
    g	2	1	3	0	0	0	0	0	0	2	3	0	0	0	0
    t	1	2	0	0	0	0	0	0	3	0	0	0	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift3 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1) |  |  |  |
    ; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---bdCGGGGAvR
    ; Alignment reference
    a	0	0	0	0	1	0	0	0	0	0	4	1	3
    c	0	0	0	1	0	4	0	0	0	0	0	2	0
    g	0	0	0	2	2	0	4	4	4	4	0	1	1
    t	0	0	0	1	1	0	0	0	0	0	0	0	0
oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1) |  |  |  |
    ; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=3; score=      1; ---bdCGGGGAvR
    ; cor=; Ncor=
    a	0	0	0	0	1	0	0	0	0	0	4	1	3
    c	0	0	0	1	0	4	0	0	0	0	0	2	0
    g	0	0	0	2	2	0	4	4	4	4	0	1	1
    t	0	0	0	1	1	0	0	0	0	0	0	0	0
oligos_7nt_mkv1_m4_rc_shift0 (oligos_7nt_mkv1_m4_rc) |  |  |  |
    ; oligos_6nt_mkv1_m1 versus oligos_7nt_mkv1_m4_rc; m=2/3; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.515781; MWGGSCGGGkd--
    ; cor=; Ncor=
    a	1	1	0	0	0	0	0	0	0	0	2	0	0
    c	3	0	0	0	1	4	0	0	0	0	0	0	0
    g	0	0	4	4	3	0	4	4	4	2	1	0	0
    t	0	3	0	0	0	0	0	0	0	2	1	0	0
oligos_6nt_mkv1_m4_rc_shift0 (oligos_6nt_mkv1_m4_rc) |  |  |  |
    ; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m4_rc; m=3/3; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.443643; cwGGGCGGkg---
    ; cor=; Ncor=
    a	1	2	0	0	0	0	0	0	0	1	0	0	0
    c	3	1	0	0	0	4	0	0	0	0	0	0	0
    g	1	0	5	5	5	0	5	5	3	3	0	0	0
    t	0	2	0	0	0	1	0	0	2	1	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m4_shift3 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_mkv1_m4_shift3 (oligos_6nt_mkv1_m4) |  |  |  |
    ; oligos_6nt_mkv1_m4; m=0 (reference); ncol1=10; shift=3; ncol=13; ---cmCCGCCCwg
    ; Alignment reference
    a	0	0	0	1	2	0	0	1	0	0	0	2	0
    c	0	0	0	3	3	5	5	0	5	5	5	0	1
    g	0	0	0	0	0	0	0	4	0	0	0	1	3
    t	0	0	0	1	0	0	0	0	0	0	0	2	1
oligos_6nt_mkv1_m4_shift3 (oligos_6nt_mkv1_m4) |  |  |  |
    ; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m4; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=3; score=      1; ---cmCCGCCCwg
    ; cor=; Ncor=
    a	0	0	0	1	2	0	0	1	0	0	0	2	0
    c	0	0	0	3	3	5	5	0	5	5	5	0	1
    g	0	0	0	0	0	0	0	4	0	0	0	1	3
    t	0	0	0	1	0	0	0	0	0	0	0	2	1
oligos_7nt_mkv1_m4_shift2 (oligos_7nt_mkv1_m4) |  |  |  |
    ; oligos_6nt_mkv1_m4 versus oligos_7nt_mkv1_m4; m=2/3; ncol2=11; w=-1; offset=-1; strand=D; shift=2; score=0.835305; --hmCCCGSCCWK
    ; cor=; Ncor=
    a	0	0	1	2	0	0	0	0	0	0	0	3	0
    c	0	0	1	2	4	4	4	0	3	4	4	0	0
    g	0	0	0	0	0	0	0	4	1	0	0	0	3
    t	0	0	2	0	0	0	0	0	0	0	0	1	1
oligos_6nt_mkv1_m1_rc_shift0 (oligos_6nt_mkv1_m1_rc) |  |  |  |
    ; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m1_rc; m=3/3; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.443643; YbTCCCCGhv---
    ; cor=; Ncor=
    a	0	0	0	0	0	0	0	0	1	1	0	0	0
    c	1	1	0	4	4	4	4	0	2	2	0	0	0
    g	0	2	0	0	0	0	0	4	0	1	0	0	0
    t	3	1	4	0	0	0	0	0	1	0	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m2_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_mkv1_m2_shift4 (oligos_7nt_mkv1_m2) |  |  |  |
    ; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=11; shift=4; ncol=15; ----CyAGTGTGCmm
    ; Alignment reference
    a	0	0	0	0	0	0	3	0	0	0	0	0	0	2	1
    c	0	0	0	0	3	2	0	0	0	0	0	0	3	1	2
    g	0	0	0	0	0	0	0	3	0	3	0	3	0	0	0
    t	0	0	0	0	0	1	0	0	3	0	3	0	0	0	0
oligos_7nt_mkv1_m2_shift4 (oligos_7nt_mkv1_m2) |  |  |  |
    ; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m2; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=4; score=      1; ----CyAGTGTGCmm
    ; cor=; Ncor=
    a	0	0	0	0	0	0	3	0	0	0	0	0	0	2	1
    c	0	0	0	0	3	2	0	0	0	0	0	0	3	1	2
    g	0	0	0	0	0	0	0	3	0	3	0	3	0	0	0
    t	0	0	0	0	0	1	0	0	3	0	3	0	0	0	0
oligos_6nt_mkv1_m3_shift4 (oligos_6nt_mkv1_m3) |  |  |  |
    ; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m3; m=2/3; ncol2=10; w=0; offset=0; strand=D; shift=4; score=0.882316; ----CyAGTGTGcm-
    ; cor=; Ncor=
    a	0	0	0	0	1	0	5	0	0	0	0	0	1	3	0
    c	0	0	0	0	4	3	0	0	0	0	0	0	3	2	0
    g	0	0	0	0	0	0	0	4	0	5	0	5	0	0	0
    t	0	0	0	0	0	2	0	1	5	0	5	0	1	0	0
oligos_7nt_mkv1_m3_rc_shift0 (oligos_7nt_mkv1_m3_rc) |  |  |  |
    ; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m3_rc; m=3/3; ncol2=13; w=-4; offset=-4; strand=R; shift=0; score=0.557607; tsyCCCAGTGTgy--
    ; cor=; Ncor=
    a	1	2	1	0	0	0	8	0	1	0	2	1	2	0	0
    c	2	4	5	8	9	8	1	0	0	0	0	2	4	0	0
    g	1	3	0	0	0	0	0	9	0	9	0	6	0	0	0
    t	5	0	3	1	0	1	0	0	8	0	7	0	3	0	0

## One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m5_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_mkv1_m5_shift4 (oligos_7nt_mkv1_m5) |  |  |  |
    ; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=4; ncol=15; ----GrAAGGTAAym
    ; Alignment reference
    a	0	0	0	0	0	1	2	2	0	0	0	2	2	0	1
    c	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1
    g	0	0	0	0	2	1	0	0	2	2	0	0	0	0	0
    t	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0
oligos_7nt_mkv1_m5_shift4 (oligos_7nt_mkv1_m5) |  |  |  |
    ; oligos_7nt_mkv1_m5 versus oligos_7nt_mkv1_m5; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=4; score=      1; ----GrAAGGTAAym
    ; cor=; Ncor=
    a	0	0	0	0	0	1	2	2	0	0	0	2	2	0	1
    c	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1
    g	0	0	0	0	2	1	0	0	2	2	0	0	0	0	0
    t	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0
oligos_6nt_mkv1_m2_rc_shift1 (oligos_6nt_mkv1_m2_rc) |  |  |  |
    ; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m2_rc; m=2/3; ncol2=10; w=-3; offset=-3; strand=R; shift=1; score=0.433037; -kgGGGAAGGh----
    ; cor=; Ncor=
    a	0	1	1	0	0	0	6	6	0	0	2	0	0	0	0
    c	0	1	0	0	0	0	0	0	0	1	2	0	0	0	0
    g	0	2	4	6	6	6	0	0	6	5	0	0	0	0	0
    t	0	2	1	0	0	0	0	0	0	0	2	0	0	0	0
oligos_7nt_mkv1_m1_rc_shift0 (oligos_7nt_mkv1_m1_rc) |  |  |  |
    ; oligos_7nt_mkv1_m5 versus oligos_7nt_mkv1_m1_rc; m=3/3; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.422077; tkGGGGAAGGmw---
    ; cor=; Ncor=
    a	1	0	1	0	0	0	5	5	0	0	2	2	0	0	0
    c	1	1	0	0	0	0	0	0	0	0	2	0	0	0	0
    g	1	2	4	5	5	5	0	0	5	5	0	0	0	0	0
    t	2	2	0	0	0	0	0	0	0	0	1	3	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m3_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_mkv1_m3_shift4 (oligos_6nt_mkv1_m3) |  |  |  |
    ; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=4; ncol=14; ----CyAGTGTGcm
    ; Alignment reference
    a	0	0	0	0	1	0	5	0	0	0	0	0	1	3
    c	0	0	0	0	4	3	0	0	0	0	0	0	3	2
    g	0	0	0	0	0	0	0	4	0	5	0	5	0	0
    t	0	0	0	0	0	2	0	1	5	0	5	0	1	0
oligos_6nt_mkv1_m3_shift4 (oligos_6nt_mkv1_m3) |  |  |  |
    ; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m3; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=4; score=      1; ----CyAGTGTGcm
    ; cor=; Ncor=
    a	0	0	0	0	1	0	5	0	0	0	0	0	1	3
    c	0	0	0	0	4	3	0	0	0	0	0	0	3	2
    g	0	0	0	0	0	0	0	4	0	5	0	5	0	0
    t	0	0	0	0	0	2	0	1	5	0	5	0	1	0
oligos_7nt_mkv1_m2_shift4 (oligos_7nt_mkv1_m2) |  |  |  |
    ; oligos_6nt_mkv1_m3 versus oligos_7nt_mkv1_m2; m=2/3; ncol2=11; w=0; offset=0; strand=D; shift=4; score=0.882316; ----CyAGTGTGCm
    ; cor=; Ncor=
    a	0	0	0	0	0	0	3	0	0	0	0	0	0	2
    c	0	0	0	0	3	2	0	0	0	0	0	0	3	1
    g	0	0	0	0	0	0	0	3	0	3	0	3	0	0
    t	0	0	0	0	0	1	0	0	3	0	3	0	0	0
oligos_7nt_mkv1_m3_rc_shift0 (oligos_7nt_mkv1_m3_rc) |  |  |  |
    ; oligos_6nt_mkv1_m3 versus oligos_7nt_mkv1_m3_rc; m=3/3; ncol2=13; w=-4; offset=-4; strand=R; shift=0; score=0.597808; tsyCCCAGTGTgy-
    ; cor=; Ncor=
    a	1	2	1	0	0	0	8	0	1	0	2	1	2	0
    c	2	4	5	8	9	8	1	0	0	0	0	2	4	0
    g	1	3	0	0	0	0	0	9	0	9	0	6	0	0
    t	5	0	3	1	0	1	0	0	8	0	7	0	3	0

## One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift3 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_mkv1_m1_shift3 (oligos_7nt_mkv1_m1) |  |  |  |
    ; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=12; shift=3; ncol=15; ---wkCCTTCCCCma
    ; Alignment reference
    a	0	0	0	3	1	0	0	0	0	0	0	0	0	2	2
    c	0	0	0	0	0	5	5	0	0	5	5	5	4	2	1
    g	0	0	0	0	2	0	0	0	0	0	0	0	0	1	1
    t	0	0	0	2	2	0	0	5	5	0	0	0	1	0	1
oligos_7nt_mkv1_m1_shift3 (oligos_7nt_mkv1_m1) |  |  |  |
    ; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=3; score=      1; ---wkCCTTCCCCma
    ; cor=; Ncor=
    a	0	0	0	3	1	0	0	0	0	0	0	0	0	2	2
    c	0	0	0	0	0	5	5	0	0	5	5	5	4	2	1
    g	0	0	0	0	2	0	0	0	0	0	0	0	0	1	1
    t	0	0	0	2	2	0	0	5	5	0	0	0	1	0	1
oligos_6nt_mkv1_m2_shift4 (oligos_6nt_mkv1_m2) |  |  |  |
    ; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m2; m=2/3; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.822016; ----dCCTTCCCcm-
    ; cor=; Ncor=
    a	0	0	0	0	2	0	0	0	0	0	0	0	1	2	0
    c	0	0	0	0	0	5	6	0	0	6	6	6	4	2	0
    g	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0
    t	0	0	0	0	2	0	0	6	6	0	0	0	1	1	0
oligos_7nt_mkv1_m5_rc_shift0 (oligos_7nt_mkv1_m5_rc) |  |  |  |
    ; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m5_rc; m=3/3; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.422077; krTTACCTTyC----
    ; cor=; Ncor=
    a	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0
    c	0	0	0	0	0	2	2	0	0	1	2	0	0	0	0
    g	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
    t	1	0	2	2	0	0	0	2	2	1	0	0	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m2_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_mkv1_m2_shift4 (oligos_6nt_mkv1_m2) |  |  |  |
    ; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=4; ncol=14; ----dCCTTCCCcm
    ; Alignment reference
    a	0	0	0	0	2	0	0	0	0	0	0	0	1	2
    c	0	0	0	0	0	5	6	0	0	6	6	6	4	2
    g	0	0	0	0	2	1	0	0	0	0	0	0	0	1
    t	0	0	0	0	2	0	0	6	6	0	0	0	1	1
oligos_6nt_mkv1_m2_shift4 (oligos_6nt_mkv1_m2) |  |  |  |
    ; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m2; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=4; score=      1; ----dCCTTCCCcm
    ; cor=; Ncor=
    a	0	0	0	0	2	0	0	0	0	0	0	0	1	2
    c	0	0	0	0	0	5	6	0	0	6	6	6	4	2
    g	0	0	0	0	2	1	0	0	0	0	0	0	0	1
    t	0	0	0	0	2	0	0	6	6	0	0	0	1	1
oligos_7nt_mkv1_m1_shift3 (oligos_7nt_mkv1_m1) |  |  |  |
    ; oligos_6nt_mkv1_m2 versus oligos_7nt_mkv1_m1; m=2/3; ncol2=12; w=-1; offset=-1; strand=D; shift=3; score=0.822016; ---wkCCTTCCCCm
    ; cor=; Ncor=
    a	0	0	0	3	1	0	0	0	0	0	0	0	0	2
    c	0	0	0	0	0	5	5	0	0	5	5	5	4	2
    g	0	0	0	0	2	0	0	0	0	0	0	0	0	1
    t	0	0	0	2	2	0	0	5	5	0	0	0	1	0
oligos_7nt_mkv1_m5_rc_shift0 (oligos_7nt_mkv1_m5_rc) |  |  |  |
    ; oligos_6nt_mkv1_m2 versus oligos_7nt_mkv1_m5_rc; m=3/3; ncol2=11; w=-4; offset=-4; strand=R; shift=0; score=0.433037; krTTACCTTyC---
    ; cor=; Ncor=
    a	0	1	0	0	2	0	0	0	0	0	0	0	0	0
    c	0	0	0	0	0	2	2	0	0	1	2	0	0	0
    g	1	1	0	0	0	0	0	0	0	0	0	0	0	0
    t	1	0	2	2	0	0	0	2	2	1	0	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m4_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_mkv1_m4_shift2 (oligos_7nt_mkv1_m4) |  |  |  |
    ; oligos_7nt_mkv1_m4; m=0 (reference); ncol1=11; shift=2; ncol=13; --hmCCCGSCCWK
    ; Alignment reference
    a	0	0	1	2	0	0	0	0	0	0	0	3	0
    c	0	0	1	2	4	4	4	0	3	4	4	0	0
    g	0	0	0	0	0	0	0	4	1	0	0	0	3
    t	0	0	2	0	0	0	0	0	0	0	0	1	1
oligos_7nt_mkv1_m4_shift2 (oligos_7nt_mkv1_m4) |  |  |  |
    ; oligos_7nt_mkv1_m4 versus oligos_7nt_mkv1_m4; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=2; score=      1; --hmCCCGSCCWK
    ; cor=; Ncor=
    a	0	0	1	2	0	0	0	0	0	0	0	3	0
    c	0	0	1	2	4	4	4	0	3	4	4	0	0
    g	0	0	0	0	0	0	0	4	1	0	0	0	3
    t	0	0	2	0	0	0	0	0	0	0	0	1	1
oligos_6nt_mkv1_m4_shift3 (oligos_6nt_mkv1_m4) |  |  |  |
    ; oligos_7nt_mkv1_m4 versus oligos_6nt_mkv1_m4; m=2/3; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.835305; ---cmCCGCCCwg
    ; cor=; Ncor=
    a	0	0	0	1	2	0	0	1	0	0	0	2	0
    c	0	0	0	3	3	5	5	0	5	5	5	0	1
    g	0	0	0	0	0	0	0	4	0	0	0	1	3
    t	0	0	0	1	0	0	0	0	0	0	0	2	1
oligos_6nt_mkv1_m1_rc_shift0 (oligos_6nt_mkv1_m1_rc) |  |  |  |
    ; oligos_7nt_mkv1_m4 versus oligos_6nt_mkv1_m1_rc; m=3/3; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.515781; YbTCCCCGhv---
    ; cor=; Ncor=
    a	0	0	0	0	0	0	0	0	1	1	0	0	0
    c	1	1	0	4	4	4	4	0	2	2	0	0	0
    g	0	2	0	0	0	0	0	4	0	1	0	0	0
    t	3	1	4	0	0	0	0	0	1	0	0	0	0