/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf
		file1	1	10	4
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m1 MA2125.1 oligos_6nt_mkv1_m1 Zfp809 0.733 0.660 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv1_m1 MA1122.2 oligos_6nt_mkv1_m1 TFDP1 0.762 0.609 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv1_m1 MA0471.3 oligos_6nt_mkv1_m1 E2F6 0.742 0.594 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv1_m1 MA1513.2 oligos_6nt_mkv1_m1 KLF15 0.890 0.566 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv1_m1 MA0865.3 oligos_6nt_mkv1_m1 E2F8 0.768 0.558 10 9 8 11 0.7273 0.8000 0.8889 R -1
oligos_6nt_mkv1_m1 MA1959.2 oligos_6nt_mkv1_m1 KLF7 0.856 0.545 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6nt_mkv1_m1 MA1117.2 oligos_6nt_mkv1_m1 RELB 0.764 0.535 10 7 7 10 0.7000 0.7000 1.0000 R 3
oligos_6nt_mkv1_m1 MA0493.3 oligos_6nt_mkv1_m1 KLF1 0.834 0.531 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6nt_mkv1_m1 MA0742.2 oligos_6nt_mkv1_m1 KLF12 0.899 0.524 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv1_m1 MA1511.2 oligos_6nt_mkv1_m1 KLF10 0.876 0.511 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv1_m1 MA0516.3 oligos_6nt_mkv1_m1 SP2 0.876 0.511 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv1_m1 MA0685.2 oligos_6nt_mkv1_m1 SP4 0.865 0.505 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv1_m1 MA0740.2 oligos_6nt_mkv1_m1 KLF14 0.862 0.503 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv1_m1 MA0758.1 oligos_6nt_mkv1_m1 E2F7 0.701 0.501 10 14 10 14 0.7143 1.0000 0.7143 R -4
oligos_6nt_mkv1_m1 MA0079.5 oligos_6nt_mkv1_m1 SP1 0.856 0.499 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv1_m1 MA0599.1 oligos_6nt_mkv1_m1 KLF5 0.708 0.472 10 10 8 12 0.6667 0.8000 0.8000 R -2
oligos_6nt_mkv1_m1 MA1515.2 oligos_6nt_mkv1_m1 KLF2 0.738 0.470 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv1_m1 MA0039.5 oligos_6nt_mkv1_m1 KLF4 0.727 0.463 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv1_m1 MA1965.2 oligos_6nt_mkv1_m1 SP5 0.758 0.455 10 6 6 10 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv1_m1 MA1961.2 oligos_6nt_mkv1_m1 PATZ1 0.732 0.450 10 11 8 13 0.6154 0.8000 0.7273 D -3
oligos_6nt_mkv1_m1 MA1522.2 oligos_6nt_mkv1_m1 MAZ 0.706 0.449 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv1_m1 MA0738.2 oligos_6nt_mkv1_m1 HIC2 0.704 0.422 10 6 6 10 0.6000 0.6000 1.0000 R 3
oligos_6nt_mkv1_m1 MA0528.3 oligos_6nt_mkv1_m1 ZNF263 0.754 0.411 10 7 6 11 0.5455 0.6000 0.8571 D 4
oligos_6nt_mkv1_m1 MA1630.3 oligos_6nt_mkv1_m1 ZNF281 0.751 0.404 10 10 7 13 0.5385 0.7000 0.7000 D -3 
 Host name	rsat
 Job started	2025-05-16.175948
 Job done	2025-05-16.175958
 Seconds	1.55
	user	1.55
	system	0.43
	cuser	7.09
;	csystem	0.71