/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m2/peak-motifs_oligos_6nt_mkv1_m2.tf
		file1	1	10	6
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m2 MA1630.3 oligos_6nt_mkv1_m2 ZNF281 0.707 0.707 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv1_m2 MA1627.2 oligos_6nt_mkv1_m2 Wt1 0.744 0.609 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv1_m2 MA1117.2 oligos_6nt_mkv1_m2 RELB 0.791 0.554 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6nt_mkv1_m2 MA0687.2 oligos_6nt_mkv1_m2 SPIC 0.708 0.545 10 13 10 13 0.7692 1.0000 0.7692 R 0
oligos_6nt_mkv1_m2 MA1116.2 oligos_6nt_mkv1_m2 RBPJ 0.860 0.516 10 6 6 10 0.6000 0.6000 1.0000 R 3
oligos_6nt_mkv1_m2 MA1121.2 oligos_6nt_mkv1_m2 TEAD2 0.729 0.510 10 7 7 10 0.7000 0.7000 1.0000 D 0
oligos_6nt_mkv1_m2 MA0528.3 oligos_6nt_mkv1_m2 ZNF263 0.717 0.502 10 7 7 10 0.7000 0.7000 1.0000 R 0
oligos_6nt_mkv1_m2 MA0471.3 oligos_6nt_mkv1_m2 E2F6 0.785 0.499 10 8 7 11 0.6364 0.7000 0.8750 R 3
oligos_6nt_mkv1_m2 MA1122.2 oligos_6nt_mkv1_m2 TFDP1 0.769 0.489 10 8 7 11 0.6364 0.7000 0.8750 R 3
oligos_6nt_mkv1_m2 MA2326.1 oligos_6nt_mkv1_m2 IKZF2 0.780 0.468 10 6 6 10 0.6000 0.6000 1.0000 R 2
oligos_6nt_mkv1_m2 MA1965.2 oligos_6nt_mkv1_m2 SP5 0.780 0.468 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv1_m2 MA1711.2 oligos_6nt_mkv1_m2 ZNF343 0.728 0.455 10 16 10 16 0.6250 1.0000 0.6250 D -1
oligos_6nt_mkv1_m2 MA1597.1 oligos_6nt_mkv1_m2 ZNF528 0.763 0.449 10 17 10 17 0.5882 1.0000 0.5882 R -5
oligos_6nt_mkv1_m2 MA1154.2 oligos_6nt_mkv1_m2 ZNF282 0.782 0.440 10 15 9 16 0.5625 0.9000 0.6000 D 1
oligos_6nt_mkv1_m2 MA0144.3 oligos_6nt_mkv1_m2 STAT3 0.750 0.437 10 9 7 12 0.5833 0.7000 0.7778 R 3
oligos_6nt_mkv1_m2 MA0137.4 oligos_6nt_mkv1_m2 STAT1 0.727 0.424 10 9 7 12 0.5833 0.7000 0.7778 R 3
oligos_6nt_mkv1_m2 MA1625.2 oligos_6nt_mkv1_m2 Stat5b 0.726 0.424 10 9 7 12 0.5833 0.7000 0.7778 D 3
oligos_6nt_mkv1_m2 MA2125.1 oligos_6nt_mkv1_m2 Zfp809 0.701 0.409 10 9 7 12 0.5833 0.7000 0.7778 D 3
oligos_6nt_mkv1_m2 MA0101.1 oligos_6nt_mkv1_m2 REL 0.745 0.401 10 10 7 13 0.5385 0.7000 0.7000 D -3 
 Host name	rsat
 Job started	2025-05-16.175958
 Job done	2025-05-16.180007
 Seconds	1.68
	user	1.68
	system	0.38
	cuser	6.46
;	csystem	0.73