/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_6nt_mkv1_m4/peak-motifs_oligos_6nt_mkv1_m4.tf
		file1	1	10	5
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m4 MA0740.2 oligos_6nt_mkv1_m4 KLF14 0.890 0.801 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv1_m4 MA0685.2 oligos_6nt_mkv1_m4 SP4 0.885 0.796 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv1_m4 MA1564.2 oligos_6nt_mkv1_m4 SP9 0.792 0.792 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 MA0516.3 oligos_6nt_mkv1_m4 SP2 0.876 0.788 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv1_m4 MA0742.2 oligos_6nt_mkv1_m4 KLF12 0.869 0.782 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv1_m4 MA1511.2 oligos_6nt_mkv1_m4 KLF10 0.858 0.772 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv1_m4 MA1513.2 oligos_6nt_mkv1_m4 KLF15 0.956 0.765 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv1_m4 MA1959.2 oligos_6nt_mkv1_m4 KLF7 0.950 0.760 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv1_m4 MA0079.5 oligos_6nt_mkv1_m4 SP1 0.836 0.753 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv1_m4 MA1961.2 oligos_6nt_mkv1_m4 PATZ1 0.825 0.750 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_6nt_mkv1_m4 MA0753.3 oligos_6nt_mkv1_m4 ZNF740 0.743 0.743 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 MA0493.3 oligos_6nt_mkv1_m4 KLF1 0.915 0.732 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv1_m4 MA0599.1 oligos_6nt_mkv1_m4 KLF5 0.889 0.727 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv1_m4 MA1512.2 oligos_6nt_mkv1_m4 KLF11 0.724 0.724 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 MA1653.2 oligos_6nt_mkv1_m4 ZNF148 0.721 0.721 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 MA1517.2 oligos_6nt_mkv1_m4 KLF6 0.798 0.718 10 9 9 10 0.9000 0.9000 1.0000 D 0
oligos_6nt_mkv1_m4 MA1515.2 oligos_6nt_mkv1_m4 KLF2 0.864 0.691 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv1_m4 MA0039.5 oligos_6nt_mkv1_m4 KLF4 0.860 0.688 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv1_m4 MA0746.3 oligos_6nt_mkv1_m4 SP3 0.750 0.681 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_6nt_mkv1_m4 MA0747.2 oligos_6nt_mkv1_m4 SP8 0.736 0.669 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6nt_mkv1_m4 MA0741.1 oligos_6nt_mkv1_m4 KLF16 0.716 0.651 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_6nt_mkv1_m4 MA2328.1 oligos_6nt_mkv1_m4 ZBED4 0.775 0.634 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv1_m4 MA1522.2 oligos_6nt_mkv1_m4 MAZ 0.761 0.609 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv1_m4 MA0471.3 oligos_6nt_mkv1_m4 E2F6 0.859 0.547 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv1_m4 MA1516.2 oligos_6nt_mkv1_m4 KLF3 0.794 0.529 10 10 8 12 0.6667 0.8000 0.8000 D -2
oligos_6nt_mkv1_m4 MA0162.5 oligos_6nt_mkv1_m4 EGR1 0.766 0.511 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv1_m4 MA0865.3 oligos_6nt_mkv1_m4 E2F8 0.700 0.509 10 9 8 11 0.7273 0.8000 0.8889 D -1
oligos_6nt_mkv1_m4 MA1122.2 oligos_6nt_mkv1_m4 TFDP1 0.792 0.504 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv1_m4 MA0748.3 oligos_6nt_mkv1_m4 YY2 0.715 0.501 10 7 7 10 0.7000 0.7000 1.0000 R 2
oligos_6nt_mkv1_m4 MA1965.2 oligos_6nt_mkv1_m4 SP5 0.809 0.485 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv1_m4 MA0733.2 oligos_6nt_mkv1_m4 EGR4 0.780 0.480 10 11 8 13 0.6154 0.8000 0.7273 D 2
oligos_6nt_mkv1_m4 MA1578.2 oligos_6nt_mkv1_m4 VEZF1 0.789 0.474 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv1_m4 MA0732.2 oligos_6nt_mkv1_m4 EGR3 0.769 0.473 10 11 8 13 0.6154 0.8000 0.7273 D 2
oligos_6nt_mkv1_m4 MA0695.2 oligos_6nt_mkv1_m4 ZBTB7C 0.721 0.459 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6nt_mkv1_m4 MA0472.2 oligos_6nt_mkv1_m4 EGR2 0.738 0.454 10 11 8 13 0.6154 0.8000 0.7273 D 2
oligos_6nt_mkv1_m4 MA1979.2 oligos_6nt_mkv1_m4 ZNF416 0.749 0.403 10 10 7 13 0.5385 0.7000 0.7000 R 3 
 Host name	rsat
 Job started	2025-05-16.180014
 Job done	2025-05-16.180026
 Seconds	1.68
	user	1.68
	system	0.56
	cuser	9.58
;	csystem	0.99