compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant html_index $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html match_table_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html match_table_txt $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5.tf file1 1 11 2 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv1_m5 | MA1112.3 | oligos_7nt_mkv1_m5 | NR4A1 | 0.771 | 0.561 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 1 |
| oligos_7nt_mkv1_m5 | MA0160.3 | oligos_7nt_mkv1_m5 | NR4A2 | 0.765 | 0.557 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 1 |
| oligos_7nt_mkv1_m5 | MA1111.2 | oligos_7nt_mkv1_m5 | NR2F2 | 0.811 | 0.516 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | D | 2 |
| oligos_7nt_mkv1_m5 | MA2338.1 | oligos_7nt_mkv1_m5 | Ppara | 0.797 | 0.507 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | D | 2 |
| oligos_7nt_mkv1_m5 | MA1121.2 | oligos_7nt_mkv1_m5 | TEAD2 | 0.737 | 0.469 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | R | 0 |
| oligos_7nt_mkv1_m5 | MA1110.3 | oligos_7nt_mkv1_m5 | Nr1H4 | 0.794 | 0.433 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 3 |
| oligos_7nt_mkv1_m5 | MA1996.2 | oligos_7nt_mkv1_m5 | Nr1H2 | 0.782 | 0.427 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 3 |
| oligos_7nt_mkv1_m5 | MA0809.3 | oligos_7nt_mkv1_m5 | TEAD4 | 0.730 | 0.426 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | R | -1 |
| oligos_7nt_mkv1_m5 | MA1717.2 | oligos_7nt_mkv1_m5 | ZNF784 | 0.706 | 0.412 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | R | -1 |
Host name rsat Job started 2025-05-16.180047 Job done 2025-05-16.180051 Seconds 0.97 user 0.97 system 0.21 cuser 3.28 ; csystem 0.3