/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
 Matrices
	file1	9 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	4
		file1	2	10	6
		file1	3	10	5
		file1	4	10	5
		file1	5	12	5
		file1	6	11	3
		file1	7	13	9
		file1	8	11	4
		file1	9	11	2
	file2	9 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		10		4
		file2		2		10		6
		file2		3		10		5
		file2		4		10		5
		file2		5		12		5
		file2		6		11		3
		file2		7		13		9
		file2		8		11		4
		file2		9		11		2
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 0.971 0.882 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 0.971 0.882 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_7nt_mkv1_m4 0.919 0.835 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m4 0.919 0.835 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 0.986 0.822 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m1 0.986 0.822 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 0.930 0.598 10 13 9 14 0.6429 0.9000 0.6923 R -4
oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_6nt_mkv1_m3 0.930 0.598 13 10 9 14 0.6429 0.6923 0.9000 R -1
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 0.929 0.558 13 11 9 15 0.6000 0.6923 0.8182 R -2
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 0.929 0.558 11 13 9 15 0.6000 0.8182 0.6923 R -4
oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m4 0.838 0.516 10 11 8 13 0.6154 0.8000 0.7273 R -3
oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m4 oligos_6nt_mkv1_m1 0.838 0.516 11 10 8 13 0.6154 0.7273 0.8000 R -2
oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m1 0.824 0.444 10 10 7 13 0.5385 0.7000 0.7000 R -3
oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m4 0.824 0.444 10 10 7 13 0.5385 0.7000 0.7000 R -3
oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m2 0.866 0.433 11 10 7 14 0.5000 0.6364 0.7000 R -3
oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m2 oligos_7nt_mkv1_m5 0.866 0.433 10 11 7 14 0.5000 0.7000 0.6364 R -4
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m1 0.791 0.422 11 12 8 15 0.5333 0.7273 0.6667 R -4
oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m5 0.791 0.422 12 11 8 15 0.5333 0.6667 0.7273 R -3 
 Host name	rsat
 Job started	2025-05-16.175942
 Job done	2025-05-16.175947
 Seconds	0.24
	user	0.24
	system	0.12
	cuser	4.22
;	csystem	0.73