One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.175925_2025-05-16.175925_FDRQXr/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m4_shift2 ; 37 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m4_shift2 (oligos_6nt_mkv1_m4)
; oligos_6nt_mkv1_m4; m=0 (reference); ncol1=10; shift=2; ncol=12; --cmCCGCCCwg ; Alignment reference a 0 0 1 2 0 0 1 0 0 0 2 0 c 0 0 3 3 5 5 0 5 5 5 0 1 g 0 0 0 0 0 0 4 0 0 0 1 3 t 0 0 1 0 0 0 0 0 0 0 2 1

MA0740.2_rc_shift2 (KLF14_rc)
; oligos_6nt_mkv1_m4 versus MA0740.2_rc (KLF14_rc); m=1/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.801296; --CCMCGCCCm- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_6nt_mkv1_m4 versus MA0685.2_rc (SP4_rc); m=2/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.796338; --CyCCKCCCc- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0

MA1564.2_shift2 (SP9)
; oligos_6nt_mkv1_m4 versus MA1564.2 (SP9); m=3/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.791531; --cCmCGCCCmc ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_6nt_mkv1_m4 versus MA0516.3_rc (SP2_rc); m=4/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.788356; --cCCCGCCCC- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0

MA0742.2_rc_shift2 (KLF12_rc)
; oligos_6nt_mkv1_m4 versus MA0742.2_rc (KLF12_rc); m=5/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.781777; --CCCCGCCCC- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0

MA1511.2_rc_shift2 (KLF10_rc)
; oligos_6nt_mkv1_m4 versus MA1511.2_rc (KLF10_rc); m=6/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.772437; --CCMCGCCCC- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0

MA1513.2_shift2 (KLF15)
; oligos_6nt_mkv1_m4 versus MA1513.2 (KLF15); m=7/36; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.765185; --cCCCGCCC-- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0

MA1959.2_rc_shift2 (KLF7_rc)
; oligos_6nt_mkv1_m4 versus MA1959.2_rc (KLF7_rc); m=8/36; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.760119; --CcMCGCCC-- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0

MA0079.5_rc_shift2 (SP1_rc)
; oligos_6nt_mkv1_m4 versus MA0079.5_rc (SP1_rc); m=9/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.752731; --CyCCKCCCC- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0

MA1961.2_rc_shift1 (PATZ1_rc)
; oligos_6nt_mkv1_m4 versus MA1961.2_rc (PATZ1_rc); m=10/36; ncol2=11; w=-1; offset=-1; strand=R; shift=1; score=0.750114; -sCCCCkCCCCs ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0

MA0753.3_shift2 (ZNF740)
; oligos_6nt_mkv1_m4 versus MA0753.3 (ZNF740); m=11/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.743389; --CCCCCCCCAc ; cor=; Ncor= a 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0

MA0493.3_rc_shift2 (KLF1_rc)
; oligos_6nt_mkv1_m4 versus MA0493.3_rc (KLF1_rc); m=12/36; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.732247; --CCmCrCCC-- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0

MA0599.1_shift1 (KLF5)
; oligos_6nt_mkv1_m4 versus MA0599.1 (KLF5); m=13/36; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.727373; -gCCMCrCCCh- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0

MA1512.2_shift2 (KLF11)
; oligos_6nt_mkv1_m4 versus MA1512.2 (KLF11); m=14/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.723797; --cCACGCCCmC ; cor=; Ncor= a 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0

MA1653.2_shift2 (ZNF148)
; oligos_6nt_mkv1_m4 versus MA1653.2 (ZNF148); m=15/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.720637; --CCCCTCCCcc ; cor=; Ncor= a 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0

MA1517.2_shift2 (KLF6)
; oligos_6nt_mkv1_m4 versus MA1517.2 (KLF6); m=16/36; ncol2=9; w=0; offset=0; strand=D; shift=2; score=0.718346; --cCACRCCCm- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0

MA1515.2_shift2 (KLF2)
; oligos_6nt_mkv1_m4 versus MA1515.2 (KLF2); m=17/36; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.691005; --CCmCrCCC-- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0

MA0039.5_shift2 (KLF4)
; oligos_6nt_mkv1_m4 versus MA0039.5 (KLF4); m=18/36; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.687922; --CCCCACCC-- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0

MA0746.3_shift1 (SP3)
; oligos_6nt_mkv1_m4 versus MA0746.3 (SP3); m=19/36; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.681398; -rCCACGCCCmC ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0

MA0747.2_shift2 (SP8)
; oligos_6nt_mkv1_m4 versus MA0747.2 (SP8); m=20/36; ncol2=11; w=0; offset=0; strand=D; shift=2; score=0.669074; --mCACgCCCmC ; cor=; Ncor= a 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0

MA0741.1_shift1 (KLF16)
; oligos_6nt_mkv1_m4 versus MA0741.1 (KLF16); m=21/36; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.651091; -gmCMCgCCCMC ; cor=; Ncor= a 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0

MA2328.1_shift3 (ZBED4)
; oligos_6nt_mkv1_m4 versus MA2328.1 (ZBED4); m=22/36; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.633848; ---CcCGCyCCG ; cor=; Ncor= a 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 c 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 g 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 t 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0

MA1522.2_shift2 (MAZ)
; oligos_6nt_mkv1_m4 versus MA1522.2 (MAZ); m=23/36; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.608503; --CCCCTCCc-- ; cor=; Ncor= a 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 c 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 g 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 t 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0

MA0471.3_rc_shift1 (E2F6_rc)
; oligos_6nt_mkv1_m4 versus MA0471.3_rc (E2F6_rc); m=24/36; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.54661; -TTCCCGCC--- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0

MA1516.2_shift0 (KLF3)
; oligos_6nt_mkv1_m4 versus MA1516.2 (KLF3); m=25/36; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.529068; grCCrCGCCC-- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0

MA0162.5_shift4 (EGR1)
; oligos_6nt_mkv1_m4 versus MA0162.5 (EGR1); m=26/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.510538; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0

MA0865.3_shift1 (E2F8)
; oligos_6nt_mkv1_m4 versus MA0865.3 (E2F8); m=27/36; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.509378; -tTCCCGCcA-- ; cor=; Ncor= a 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 c 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 g 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 t 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0

MA1122.2_rc_shift1 (TFDP1_rc)
; oligos_6nt_mkv1_m4 versus MA1122.2_rc (TFDP1_rc); m=28/36; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.504212; -TTCCCGCs--- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0

MA0748.3_rc_shift4 (YY2_rc)
; oligos_6nt_mkv1_m4 versus MA0748.3_rc (YY2_rc); m=29/36; ncol2=7; w=0; offset=2; strand=R; shift=4; score=0.500677; ----CCGCCAT- ; cor=; Ncor= a 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 0 c 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 0 g 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 0 t 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0 0

MA1965.2_shift4 (SP5)
; oligos_6nt_mkv1_m4 versus MA1965.2 (SP5); m=30/36; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.485409; ----CCTCCC-- ; cor=; Ncor= a 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0

MA0733.2_shift4 (EGR4)
; oligos_6nt_mkv1_m4 versus MA0733.2 (EGR4); m=31/36; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.480207; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0

MA1578.2_shift4 (VEZF1)
; oligos_6nt_mkv1_m4 versus MA1578.2 (VEZF1); m=32/36; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.473678; ----CCCCCC-- ; cor=; Ncor= a 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 c 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 g 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 t 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0

MA0732.2_shift4 (EGR3)
; oligos_6nt_mkv1_m4 versus MA0732.2 (EGR3); m=33/36; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.47345; ----mCGCCCMC ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0

MA0695.2_shift1 (ZBTB7C)
; oligos_6nt_mkv1_m4 versus MA0695.2 (ZBTB7C); m=34/36; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.458517; -cgACCACC--- ; cor=; Ncor= a 0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 0 0 0 c 0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 0 0 0 g 0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 0 0 0 t 0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 0 0 0

MA0472.2_shift4 (EGR2)
; oligos_6nt_mkv1_m4 versus MA0472.2 (EGR2); m=35/36; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.453967; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0

MA1979.2_rc_shift5 (ZNF416_rc)
; oligos_6nt_mkv1_m4 versus MA1979.2_rc (ZNF416_rc); m=36/36; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.403213; -----tGCCCAG ; cor=; Ncor= a 0 0 0 0 0 66.0 18.0 3.0 3.0 2.0 336.0 3.0 c 0 0 0 0 0 29.0 3.0 341.0 335.0 335.0 1.0 7.0 g 0 0 0 0 0 38.0 320.0 1.0 5.0 7.0 6.0 334.0 t 0 0 0 0 0 212.0 4.0 0.0 2.0 1.0 2.0 1.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m4_shift1 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m4_shift1 (oligos_7nt_mkv1_m4)
; oligos_7nt_mkv1_m4; m=0 (reference); ncol1=11; shift=1; ncol=12; -hmCCCGSCCWK ; Alignment reference a 0 1 2 0 0 0 0 0 0 0 3 0 c 0 1 2 4 4 4 0 3 4 4 0 0 g 0 0 0 0 0 0 4 1 0 0 0 3 t 0 2 0 0 0 0 0 0 0 0 1 1

MA0599.1_shift1 (KLF5)
; oligos_7nt_mkv1_m4 versus MA0599.1 (KLF5); m=1/29; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.724476; -gCCMCrCCCh- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0

MA1961.2_rc_shift1 (PATZ1_rc)
; oligos_7nt_mkv1_m4 versus MA1961.2_rc (PATZ1_rc); m=2/29; ncol2=11; w=0; offset=0; strand=R; shift=1; score=0.719114; -sCCCCkCCCCs ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0

MA0740.2_rc_shift2 (KLF14_rc)
; oligos_7nt_mkv1_m4 versus MA0740.2_rc (KLF14_rc); m=3/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.71719; --CCMCGCCCm- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0

MA0742.2_rc_shift2 (KLF12_rc)
; oligos_7nt_mkv1_m4 versus MA0742.2_rc (KLF12_rc); m=4/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.701656; --CCCCGCCCC- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0

MA1513.2_shift2 (KLF15)
; oligos_7nt_mkv1_m4 versus MA1513.2 (KLF15); m=5/29; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.701339; --cCCCGCCC-- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_7nt_mkv1_m4 versus MA0516.3_rc (SP2_rc); m=6/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.695016; --cCCCGCCCC- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_7nt_mkv1_m4 versus MA0685.2_rc (SP4_rc); m=7/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.685855; --CyCCKCCCc- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0

MA1564.2_shift2 (SP9)
; oligos_7nt_mkv1_m4 versus MA1564.2 (SP9); m=8/29; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.684835; --cCmCGCCCmc ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0

MA1511.2_rc_shift2 (KLF10_rc)
; oligos_7nt_mkv1_m4 versus MA1511.2_rc (KLF10_rc); m=9/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.678666; --CCMCGCCCC- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0

MA1959.2_rc_shift2 (KLF7_rc)
; oligos_7nt_mkv1_m4 versus MA1959.2_rc (KLF7_rc); m=10/29; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.652345; --CcMCGCCC-- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0

MA0079.5_rc_shift2 (SP1_rc)
; oligos_7nt_mkv1_m4 versus MA0079.5_rc (SP1_rc); m=11/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.643125; --CyCCKCCCC- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0

MA0493.3_rc_shift2 (KLF1_rc)
; oligos_7nt_mkv1_m4 versus MA0493.3_rc (KLF1_rc); m=12/29; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.638992; --CCmCrCCC-- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0

MA1517.2_shift2 (KLF6)
; oligos_7nt_mkv1_m4 versus MA1517.2 (KLF6); m=13/29; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.630201; --cCACRCCCm- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0

MA1515.2_shift2 (KLF2)
; oligos_7nt_mkv1_m4 versus MA1515.2 (KLF2); m=14/29; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.607717; --CCmCrCCC-- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0

MA0471.3_rc_shift1 (E2F6_rc)
; oligos_7nt_mkv1_m4 versus MA0471.3_rc (E2F6_rc); m=15/29; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.602932; -TTCCCGCC--- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0

MA0747.2_shift2 (SP8)
; oligos_7nt_mkv1_m4 versus MA0747.2 (SP8); m=16/29; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.601505; --mCACgCCCmC ; cor=; Ncor= a 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0

MA2328.1_shift3 (ZBED4)
; oligos_7nt_mkv1_m4 versus MA2328.1 (ZBED4); m=17/29; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.587285; ---CcCGCyCCG ; cor=; Ncor= a 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 c 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 g 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 t 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0

MA0865.3_shift1 (E2F8)
; oligos_7nt_mkv1_m4 versus MA0865.3 (E2F8); m=18/29; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.581994; -tTCCCGCcA-- ; cor=; Ncor= a 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 c 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 g 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 t 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0

MA0039.5_shift2 (KLF4)
; oligos_7nt_mkv1_m4 versus MA0039.5 (KLF4); m=19/29; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.575979; --CCCCACCC-- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0

MA1122.2_rc_shift1 (TFDP1_rc)
; oligos_7nt_mkv1_m4 versus MA1122.2_rc (TFDP1_rc); m=20/29; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.563038; -TTCCCGCs--- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0

MA1516.2_shift0 (KLF3)
; oligos_7nt_mkv1_m4 versus MA1516.2 (KLF3); m=21/29; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.562226; grCCrCGCCC-- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0

MA1522.2_shift2 (MAZ)
; oligos_7nt_mkv1_m4 versus MA1522.2 (MAZ); m=22/29; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.532182; --CCCCTCCc-- ; cor=; Ncor= a 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 c 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 g 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 t 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0

MA0162.5_shift4 (EGR1)
; oligos_7nt_mkv1_m4 versus MA0162.5 (EGR1); m=23/29; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.441339; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0

MA0733.2_shift4 (EGR4)
; oligos_7nt_mkv1_m4 versus MA0733.2 (EGR4); m=24/29; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.422864; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0

MA0732.2_shift4 (EGR3)
; oligos_7nt_mkv1_m4 versus MA0732.2 (EGR3); m=25/29; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.419323; ----mCGCCCMC ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0

MA1965.2_shift4 (SP5)
; oligos_7nt_mkv1_m4 versus MA1965.2 (SP5); m=26/29; ncol2=6; w=0; offset=3; strand=D; shift=4; score=0.412567; ----CCTCCC-- ; cor=; Ncor= a 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0

MA0472.2_shift4 (EGR2)
; oligos_7nt_mkv1_m4 versus MA0472.2 (EGR2); m=27/29; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.410854; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0

MA1979.2_rc_shift5 (ZNF416_rc)
; oligos_7nt_mkv1_m4 versus MA1979.2_rc (ZNF416_rc); m=28/29; ncol2=10; w=0; offset=4; strand=R; shift=5; score=0.404315; -----tGCCCAG ; cor=; Ncor= a 0 0 0 0 0 66.0 18.0 3.0 3.0 2.0 336.0 3.0 c 0 0 0 0 0 29.0 3.0 341.0 335.0 335.0 1.0 7.0 g 0 0 0 0 0 38.0 320.0 1.0 5.0 7.0 6.0 334.0 t 0 0 0 0 0 212.0 4.0 0.0 2.0 1.0 2.0 1.0

MA1578.2_shift3 (VEZF1)
; oligos_7nt_mkv1_m4 versus MA1578.2 (VEZF1); m=29/29; ncol2=6; w=0; offset=2; strand=D; shift=3; score=0.400179; ---CCCCCC--- ; cor=; Ncor= a 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 c 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 g 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m2_shift5 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m2_shift5 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=5; ncol=15; -----dCCTTCCCcm ; Alignment reference a 0 0 0 0 0 2 0 0 0 0 0 0 0 1 2 c 0 0 0 0 0 0 5 6 0 0 6 6 6 4 2 g 0 0 0 0 0 2 1 0 0 0 0 0 0 0 1 t 0 0 0 0 0 2 0 0 6 6 0 0 0 1 1

MA1630.3_rc_shift5 (ZNF281_rc)
; oligos_6nt_mkv1_m2 versus MA1630.3_rc (ZNF281_rc); m=1/19; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.70725; -----CCCCTCCCCC ; cor=; Ncor= a 0 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 c 0 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 g 0 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 t 0 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0

MA1627.2_shift6 (Wt1)
; oligos_6nt_mkv1_m2 versus MA1627.2 (Wt1); m=2/19; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.608693; ------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0

MA1117.2_shift7 (RELB)
; oligos_6nt_mkv1_m2 versus MA1117.2 (RELB); m=3/19; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.554038; -------ATTCCCC- ; cor=; Ncor= a 0 0 0 0 0 0 0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 0 c 0 0 0 0 0 0 0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 0 g 0 0 0 0 0 0 0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 0 t 0 0 0 0 0 0 0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 0

MA0687.2_rc_shift5 (SPIC_rc)
; oligos_6nt_mkv1_m2 versus MA0687.2_rc (SPIC_rc); m=4/19; ncol2=13; w=0; offset=0; strand=R; shift=5; score=0.544629; -----tACTTCCksW ; cor=; Ncor= a 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 c 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 g 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 t 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0

MA1116.2_rc_shift8 (RBPJ_rc)
; oligos_6nt_mkv1_m2 versus MA1116.2_rc (RBPJ_rc); m=5/19; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.515806; --------TTCCCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 c 0 0 0 0 0 0 0 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 g 0 0 0 0 0 0 0 0 15.0 0.0 8.0 20.0 25.0 12.0 0 t 0 0 0 0 0 0 0 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0

MA1121.2_shift5 (TEAD2)
; oligos_6nt_mkv1_m2 versus MA1121.2 (TEAD2); m=6/19; ncol2=7; w=0; offset=0; strand=D; shift=5; score=0.510125; -----ACATTCC--- ; cor=; Ncor= a 0 0 0 0 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 c 0 0 0 0 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 g 0 0 0 0 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 t 0 0 0 0 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0

MA0528.3_rc_shift5 (ZNF263_rc)
; oligos_6nt_mkv1_m2 versus MA0528.3_rc (ZNF263_rc); m=7/19; ncol2=7; w=0; offset=0; strand=R; shift=5; score=0.502021; -----TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0

MA0471.3_rc_shift8 (E2F6_rc)
; oligos_6nt_mkv1_m2 versus MA0471.3_rc (E2F6_rc); m=8/19; ncol2=8; w=0; offset=3; strand=R; shift=8; score=0.499249; --------TTCCCGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 c 0 0 0 0 0 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 g 0 0 0 0 0 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 t 0 0 0 0 0 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0

MA1122.2_rc_shift8 (TFDP1_rc)
; oligos_6nt_mkv1_m2 versus MA1122.2_rc (TFDP1_rc); m=9/19; ncol2=8; w=0; offset=3; strand=R; shift=8; score=0.489442; --------TTCCCGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 c 0 0 0 0 0 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 g 0 0 0 0 0 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 t 0 0 0 0 0 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0

MA2326.1_rc_shift7 (IKZF2_rc)
; oligos_6nt_mkv1_m2 versus MA2326.1_rc (IKZF2_rc); m=10/19; ncol2=6; w=0; offset=2; strand=R; shift=7; score=0.468276; -------CTTCCT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 43.0 18.0 88.0 112.0 21.0 6.0 0 0 c 0 0 0 0 0 0 0 11273.0 26.0 17.0 11270.0 11244.0 79.0 0 0 g 0 0 0 0 0 0 0 57.0 191.0 25.0 7.0 127.0 208.0 0 0 t 0 0 0 0 0 0 0 21.0 11159.0 11264.0 5.0 2.0 11101.0 0 0

MA1965.2_shift7 (SP5)
; oligos_6nt_mkv1_m2 versus MA1965.2 (SP5); m=11/19; ncol2=6; w=0; offset=2; strand=D; shift=7; score=0.467794; -------CCTCCC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0

MA1711.2_shift4 (ZNF343)
; oligos_6nt_mkv1_m2 versus MA1711.2 (ZNF343); m=12/19; ncol2=16; w=-1; offset=-1; strand=D; shift=4; score=0.454949; ----cCGCTTCmCcr ; cor=; Ncor= a 0 0 0 0 10105.0 4185.0 4153.0 0.0 19.0 0.0 0.0 33687.0 596.0 3426.0 18171.0 c 0 0 0 0 24859.0 37120.0 151.0 48708.0 27.0 34.0 48704.0 21143.0 46517.0 40351.0 3888.0 g 0 0 0 0 10803.0 1986.0 47061.0 0.0 0.0 4.0 0.0 860.0 2241.0 9030.0 15622.0 t 0 0 0 0 2940.0 9478.0 489.0 8.0 48711.0 48706.0 0.0 3644.0 2021.0 6764.0 11027.0

MA1597.1_rc_shift0 (ZNF528_rc)
; oligos_6nt_mkv1_m2 versus MA1597.1_rc (ZNF528_rc); m=13/19; ncol2=17; w=-5; offset=-5; strand=R; shift=0; score=0.448577; GaAATGgCTTCCCTg ; cor=; Ncor= a 34.0 414.0 504.0 547.0 1.0 8.0 113.0 2.0 7.0 2.0 2.0 6.0 8.0 19.0 48.0 c 8.0 62.0 14.0 11.0 7.0 3.0 54.0 608.0 26.0 3.0 590.0 598.0 573.0 61.0 64.0 g 558.0 129.0 97.0 47.0 2.0 590.0 414.0 1.0 4.0 3.0 2.0 5.0 3.0 12.0 404.0 t 16.0 11.0 1.0 11.0 606.0 15.0 35.0 5.0 579.0 608.0 22.0 7.0 32.0 524.0 100.0

MA1154.2_shift6 (ZNF282)
; oligos_6nt_mkv1_m2 versus MA1154.2 (ZNF282); m=14/19; ncol2=15; w=0; offset=1; strand=D; shift=6; score=0.440098; ------cTTTCCCmy ; cor=; Ncor= a 0 0 0 0 0 0 21.0 39.0 16.0 3.0 0.0 0.0 0.0 140.0 12.0 c 0 0 0 0 0 0 196.0 21.0 0.0 2.0 209.0 208.0 205.0 99.0 132.0 g 0 0 0 0 0 0 50.0 7.0 8.0 3.0 2.0 0.0 3.0 0.0 2.0 t 0 0 0 0 0 0 45.0 378.0 387.0 380.0 0.0 1.0 2.0 21.0 126.0

MA0144.3_rc_shift8 (STAT3_rc)
; oligos_6nt_mkv1_m2 versus MA0144.3_rc (STAT3_rc); m=15/19; ncol2=9; w=0; offset=3; strand=R; shift=8; score=0.437415; --------TTCCmrG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 402.0 0.0 6472.0 13000.0 1029.0 c 0 0 0 0 0 0 0 0 0.0 0.0 18686.0 20046.0 11456.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 7780.0 19585.0 t 0 0 0 0 0 0 0 0 21620.0 21620.0 2532.0 1574.0 3692.0 840.0 1006.0

MA0137.4_rc_shift8 (STAT1_rc)
; oligos_6nt_mkv1_m2 versus MA0137.4_rc (STAT1_rc); m=16/19; ncol2=9; w=0; offset=3; strand=R; shift=8; score=0.423871; --------TTCCyrG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 167.0 0.0 253.0 1511.0 0.0 c 0 0 0 0 0 0 0 0 0.0 9.0 3426.0 3466.0 1637.0 0.0 6.0 g 0 0 0 0 0 0 0 0 5.0 0.0 7.0 0.0 0.0 2009.0 3262.0 t 0 0 0 0 0 0 0 0 3624.0 3620.0 29.0 163.0 1739.0 109.0 361.0

MA1625.2_shift8 (Stat5b)
; oligos_6nt_mkv1_m2 versus MA1625.2 (Stat5b); m=17/19; ncol2=9; w=0; offset=3; strand=D; shift=8; score=0.423785; --------TTCCcAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 51.0 92.0 32.0 74.0 462.0 2474.0 10.0 c 0 0 0 0 0 0 0 0 54.0 34.0 2666.0 2176.0 1746.0 60.0 16.0 g 0 0 0 0 0 0 0 0 51.0 34.0 23.0 43.0 127.0 150.0 2717.0 t 0 0 0 0 0 0 0 0 2604.0 2600.0 39.0 467.0 425.0 76.0 17.0

MA2125.1_shift8 (Zfp809)
; oligos_6nt_mkv1_m2 versus MA2125.1 (Zfp809); m=18/19; ncol2=9; w=0; offset=3; strand=D; shift=8; score=0.409015; --------wTCCCAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 c 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 g 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 t 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0

MA0101.1_shift2 (REL)
; oligos_6nt_mkv1_m2 versus MA0101.1 (REL); m=19/19; ncol2=10; w=-3; offset=-3; strand=D; shift=2; score=0.401029; --sGGrmwTTCC--- ; cor=; Ncor= a 0 0 0.0 0.0 1.0 5.0 6.0 5.0 1.0 2.0 0.0 1.0 0 0 0 c 0 0 5.0 1.0 0.0 1.0 5.0 1.0 0.0 0.0 15.0 16.0 0 0 0 g 0 0 8.0 15.0 15.0 9.0 3.0 1.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 4.0 1.0 1.0 2.0 3.0 10.0 16.0 15.0 2.0 0.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift4 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m1_shift4 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=4; ncol=14; ----bdCGGGGAvR ; Alignment reference a 0 0 0 0 0 1 0 0 0 0 0 4 1 3 c 0 0 0 0 1 0 4 0 0 0 0 0 2 0 g 0 0 0 0 2 2 0 4 4 4 4 0 1 1 t 0 0 0 0 1 1 0 0 0 0 0 0 0 0

MA2125.1_rc_shift4 (Zfp809_rc)
; oligos_6nt_mkv1_m1 versus MA2125.1_rc (Zfp809_rc); m=1/24; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.65967; ----gGCTGGGAw- ; cor=; Ncor= a 0 0 0 0 242.0 61.0 26.0 37.0 18.0 21.0 25.0 1578.0 690.0 0 c 0 0 0 0 115.0 99.0 1572.0 73.0 16.0 14.0 18.0 23.0 81.0 0 g 0 0 0 0 1091.0 1218.0 35.0 26.0 1621.0 1610.0 1607.0 41.0 66.0 0 t 0 0 0 0 217.0 287.0 32.0 1529.0 10.0 20.0 15.0 23.0 828.0 0

MA1122.2_shift4 (TFDP1)
; oligos_6nt_mkv1_m1 versus MA1122.2 (TFDP1); m=2/24; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.609376; ----sGCGGGAA-- ; cor=; Ncor= a 0 0 0 0 263.0 48.0 28.0 14.0 36.0 27.0 1855.0 1645.0 0 0 c 0 0 0 0 684.0 71.0 1886.0 54.0 80.0 32.0 24.0 170.0 0 0 g 0 0 0 0 940.0 1862.0 22.0 1932.0 1865.0 1919.0 98.0 137.0 0 0 t 0 0 0 0 120.0 26.0 71.0 7.0 26.0 29.0 30.0 55.0 0 0

MA0471.3_shift4 (E2F6)
; oligos_6nt_mkv1_m1 versus MA0471.3 (E2F6); m=3/24; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.593826; ----GGCGGGAA-- ; cor=; Ncor= a 0 0 0 0 2110.0 266.0 3856.0 1173.0 338.0 354.0 29337.0 25725.0 0 0 c 0 0 0 0 1148.0 837.0 26424.0 539.0 434.0 834.0 1171.0 1595.0 0 0 g 0 0 0 0 29387.0 31790.0 693.0 30573.0 31973.0 31614.0 2322.0 5021.0 0 0 t 0 0 0 0 453.0 205.0 2125.0 813.0 353.0 296.0 268.0 757.0 0 0

MA1513.2_rc_shift3 (KLF15_rc)
; oligos_6nt_mkv1_m1 versus MA1513.2_rc (KLF15_rc); m=4/24; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.566126; ---GGGCGGGg--- ; cor=; Ncor= a 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 c 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 g 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 t 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0

MA0865.3_rc_shift3 (E2F8_rc)
; oligos_6nt_mkv1_m1 versus MA0865.3_rc (E2F8_rc); m=5/24; ncol2=9; w=-1; offset=-1; strand=R; shift=3; score=0.558265; ---TgGCGGGAa-- ; cor=; Ncor= a 0 0 0 97.0 274.0 15.0 13.0 13.0 0.0 16.0 1566.0 1012.0 0 0 c 0 0 0 95.0 537.0 26.0 1566.0 6.0 374.0 170.0 96.0 78.0 0 0 g 0 0 0 128.0 1566.0 1566.0 7.0 1566.0 1566.0 1566.0 237.0 321.0 0 0 t 0 0 0 1566.0 104.0 1.0 39.0 44.0 12.0 78.0 405.0 155.0 0 0

MA1959.2_shift3 (KLF7)
; oligos_6nt_mkv1_m1 versus MA1959.2 (KLF7); m=6/24; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.544709; ---GGGCGKgG--- ; cor=; Ncor= a 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 c 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 g 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 t 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0

MA1117.2_rc_shift7 (RELB_rc)
; oligos_6nt_mkv1_m1 versus MA1117.2_rc (RELB_rc); m=7/24; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.534848; -------GGGGAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 73.0 72.0 178.0 3044.0 2814.0 173.0 c 0 0 0 0 0 0 0 107.0 58.0 28.0 40.0 53.0 159.0 157.0 g 0 0 0 0 0 0 0 3035.0 3013.0 3098.0 2928.0 103.0 107.0 127.0 t 0 0 0 0 0 0 0 79.0 146.0 92.0 144.0 90.0 210.0 2833.0

MA0493.3_shift3 (KLF1)
; oligos_6nt_mkv1_m1 versus MA0493.3 (KLF1); m=8/24; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.530836; ---GGGyGkGG--- ; cor=; Ncor= a 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 c 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 g 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 t 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0

MA0742.2_shift2 (KLF12)
; oligos_6nt_mkv1_m1 versus MA0742.2 (KLF12); m=9/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.524215; --GGGGCGGGG--- ; cor=; Ncor= a 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 c 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 g 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 t 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0

MA1511.2_shift2 (KLF10)
; oligos_6nt_mkv1_m1 versus MA1511.2 (KLF10); m=10/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.510916; --GGGGCGKGG--- ; cor=; Ncor= a 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 c 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 g 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 t 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0

MA0516.3_shift2 (SP2)
; oligos_6nt_mkv1_m1 versus MA0516.3 (SP2); m=11/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.510909; --GGGGCGGGg--- ; cor=; Ncor= a 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 c 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 g 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 t 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0

MA0685.2_shift2 (SP4)
; oligos_6nt_mkv1_m1 versus MA0685.2 (SP4); m=12/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.504546; --gGGGMGGrG--- ; cor=; Ncor= a 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 c 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 g 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 t 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0

MA0740.2_shift2 (KLF14)
; oligos_6nt_mkv1_m1 versus MA0740.2 (KLF14); m=13/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.502958; --kGGGCGKGG--- ; cor=; Ncor= a 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 c 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 g 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 t 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0

MA0758.1_rc_shift0 (E2F7_rc)
; oligos_6nt_mkv1_m1 versus MA0758.1_rc (E2F7_rc); m=14/24; ncol2=14; w=-4; offset=-4; strand=R; shift=0; score=0.500659; wTTTGGCGGGAAAa ; cor=; Ncor= a 292.0 43.0 6.0 5.0 1.0 0.0 0.0 0.0 0.0 0.0 957.0 963.0 891.0 577.0 c 2.0 0.0 3.0 0.0 17.0 0.0 995.0 0.0 10.0 2.0 0.0 0.0 18.0 182.0 g 2.0 2.0 1.0 0.0 977.0 986.0 1.0 965.0 961.0 960.0 1.0 3.0 7.0 72.0 t 608.0 859.0 930.0 912.0 0.0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 38.0 222.0

MA0079.5_shift2 (SP1)
; oligos_6nt_mkv1_m1 versus MA0079.5 (SP1); m=15/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.499432; --GGGGMGGrG--- ; cor=; Ncor= a 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 c 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 g 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 t 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0

MA0599.1_rc_shift2 (KLF5_rc)
; oligos_6nt_mkv1_m1 versus MA0599.1_rc (KLF5_rc); m=16/24; ncol2=10; w=-2; offset=-2; strand=R; shift=2; score=0.47201; --dGGGyGKGGc-- ; cor=; Ncor= a 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0

MA1515.2_rc_shift3 (KLF2_rc)
; oligos_6nt_mkv1_m1 versus MA1515.2_rc (KLF2_rc); m=17/24; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.469613; ---GGGyGkGG--- ; cor=; Ncor= a 0 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 346.0 0 0 0 c 0 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 495.0 0 0 0 g 0 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 4622.0 0 0 0 t 0 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0 741.0 0 0 0

MA0039.5_rc_shift3 (KLF4_rc)
; oligos_6nt_mkv1_m1 versus MA0039.5_rc (KLF4_rc); m=18/24; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.46255; ---GGGTGGGG--- ; cor=; Ncor= a 0 0 0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 0 0 0 c 0 0 0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 0 0 0 g 0 0 0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 0 0 0 t 0 0 0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 0 0 0

MA1965.2_rc_shift8 (SP5_rc)
; oligos_6nt_mkv1_m1 versus MA1965.2_rc (SP5_rc); m=19/24; ncol2=6; w=0; offset=4; strand=R; shift=8; score=0.454815; --------GGGAGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 0.0 20465.0 0.0 4.0 c 0 0 0 0 0 0 0 0 92.0 234.0 0.0 231.0 403.0 3.0 g 0 0 0 0 0 0 0 0 20604.0 20451.0 20649.0 0.0 20286.0 20683.0 t 0 0 0 0 0 0 0 0 0.0 11.0 47.0 0.0 7.0 6.0

MA1961.2_shift1 (PATZ1)
; oligos_6nt_mkv1_m1 versus MA1961.2 (PATZ1); m=20/24; ncol2=11; w=-3; offset=-3; strand=D; shift=1; score=0.45035; -sGGGGmGGGGs-- ; cor=; Ncor= a 0 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 0 c 0 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 0 g 0 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 0 t 0 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0 0

MA1522.2_rc_shift3 (MAZ_rc)
; oligos_6nt_mkv1_m1 versus MA1522.2_rc (MAZ_rc); m=21/24; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.449447; ---gGGAGGGG--- ; cor=; Ncor= a 0 0 0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 0 0 0 c 0 0 0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 0 0 0 g 0 0 0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 0 0 0 t 0 0 0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 0 0 0

MA0738.2_rc_shift7 (HIC2_rc)
; oligos_6nt_mkv1_m1 versus MA0738.2_rc (HIC2_rc); m=22/24; ncol2=6; w=0; offset=3; strand=R; shift=7; score=0.422133; -------KGGCAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 59.0 0.0 151.0 4891.0 367.0 0 c 0 0 0 0 0 0 0 0.0 0.0 14.0 4891.0 0.0 2285.0 0 g 0 0 0 0 0 0 0 3425.0 4891.0 4891.0 354.0 117.0 394.0 0 t 0 0 0 0 0 0 0 1466.0 435.0 23.0 494.0 0.0 2606.0 0

MA0528.3_shift8 (ZNF263)
; oligos_6nt_mkv1_m1 versus MA0528.3 (ZNF263); m=23/24; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.411376; --------GGGAGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1610.0 789.0 950.0 53900.0 830.0 695.0 c 0 0 0 0 0 0 0 0 1659.0 1544.0 972.0 1660.0 966.0 2190.0 g 0 0 0 0 0 0 0 0 51804.0 52818.0 53435.0 163.0 52875.0 52741.0 t 0 0 0 0 0 0 0 0 1270.0 1192.0 986.0 620.0 1672.0 717.0

MA1630.3_shift1 (ZNF281)
; oligos_6nt_mkv1_m1 versus MA1630.3 (ZNF281); m=24/24; ncol2=10; w=-3; offset=-3; strand=D; shift=1; score=0.40437; -GGGGGAGGGG--- ; cor=; Ncor= a 0 1.0 1.0 35.0 1.0 1.0 720.0 122.0 1.0 41.0 47.0 0 0 0 c 0 1.0 1.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 27.0 0 0 0 g 0 998.0 998.0 963.0 998.0 998.0 1.0 772.0 998.0 940.0 920.0 0 0 0 t 0 1.0 1.0 1.0 1.0 1.0 96.0 105.0 1.0 18.0 7.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; wkCCTTCCCCma ; Alignment reference a 3 1 0 0 0 0 0 0 0 0 2 2 c 0 0 5 5 0 0 5 5 5 4 2 1 g 0 2 0 0 0 0 0 0 0 0 1 1 t 2 2 0 0 5 5 0 0 0 1 0 1

MA1630.3_rc_shift1 (ZNF281_rc)
; oligos_7nt_mkv1_m1 versus MA1630.3_rc (ZNF281_rc); m=1/9; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.609465; -CCCCTCCCCC- ; cor=; Ncor= a 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 c 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 g 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 t 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0

MA1627.2_shift2 (Wt1)
; oligos_7nt_mkv1_m1 versus MA1627.2 (Wt1); m=2/9; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.598446; --cCTCCCCCAC ; cor=; Ncor= a 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0

MA1122.2_rc_shift4 (TFDP1_rc)
; oligos_7nt_mkv1_m1 versus MA1122.2_rc (TFDP1_rc); m=3/9; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.491774; ----TTCCCGCs ; cor=; Ncor= a 0 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 c 0 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 g 0 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 t 0 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0

MA0471.3_rc_shift4 (E2F6_rc)
; oligos_7nt_mkv1_m1 versus MA0471.3_rc (E2F6_rc); m=4/9; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.475417; ----TTCCCGCC ; cor=; Ncor= a 0 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 c 0 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 g 0 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 t 0 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0

MA1117.2_shift3 (RELB)
; oligos_7nt_mkv1_m1 versus MA1117.2 (RELB); m=5/9; ncol2=7; w=0; offset=3; strand=D; shift=3; score=0.468964; ---ATTCCCC-- ; cor=; Ncor= a 0 0 0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 0 0 c 0 0 0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 0 0 g 0 0 0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 0 0 t 0 0 0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 0 0

MA1154.2_shift2 (ZNF282)
; oligos_7nt_mkv1_m1 versus MA1154.2 (ZNF282); m=6/9; ncol2=15; w=0; offset=2; strand=D; shift=2; score=0.43362; --cTTTCCCmyA ; cor=; Ncor= a 0 0 21.0 39.0 16.0 3.0 0.0 0.0 0.0 140.0 12.0 256.0 c 0 0 196.0 21.0 0.0 2.0 209.0 208.0 205.0 99.0 132.0 3.0 g 0 0 50.0 7.0 8.0 3.0 2.0 0.0 3.0 0.0 2.0 37.0 t 0 0 45.0 378.0 387.0 380.0 0.0 1.0 2.0 21.0 126.0 61.0

MA0528.3_rc_shift1 (ZNF263_rc)
; oligos_7nt_mkv1_m1 versus MA0528.3_rc (ZNF263_rc); m=7/9; ncol2=7; w=0; offset=1; strand=R; shift=1; score=0.431713; -TCCTCCC---- ; cor=; Ncor= a 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 0 c 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 0 g 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 0 t 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0 0

MA1121.2_shift1 (TEAD2)
; oligos_7nt_mkv1_m1 versus MA1121.2 (TEAD2); m=8/9; ncol2=7; w=0; offset=1; strand=D; shift=1; score=0.416732; -ACATTCC---- ; cor=; Ncor= a 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 0 c 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 0 g 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 0 t 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0 0

MA1116.2_rc_shift4 (RBPJ_rc)
; oligos_7nt_mkv1_m1 versus MA1116.2_rc (RBPJ_rc); m=9/9; ncol2=6; w=0; offset=4; strand=R; shift=4; score=0.40085; ----TTCCCA-- ; cor=; Ncor= a 0 0 0 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 c 0 0 0 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 g 0 0 0 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 t 0 0 0 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m3_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m3_shift1 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -CyAGTGTGcm ; Alignment reference a 0 1 0 5 0 0 0 0 0 1 3 c 0 4 3 0 0 0 0 0 0 3 2 g 0 0 0 0 4 0 5 0 5 0 0 t 0 0 2 0 1 5 0 5 0 1 0

MA0143.5_rc_shift1 (SOX2_rc)
; oligos_6nt_mkv1_m3 versus MA0143.5_rc (SOX2_rc); m=1/8; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.578064; -cCATTGT--- ; cor=; Ncor= a 0 10304.0 1656.0 79277.0 1185.0 2412.0 4848.0 1385.0 0 0 0 c 0 54414.0 73372.0 930.0 2002.0 550.0 1243.0 418.0 0 0 0 g 0 6264.0 800.0 732.0 1742.0 1205.0 78356.0 436.0 0 0 0 t 0 14772.0 9926.0 4815.0 80825.0 81587.0 1307.0 83515.0 0 0 0

MA0514.3_rc_shift1 (Sox3_rc)
; oligos_6nt_mkv1_m3 versus MA0514.3_rc (Sox3_rc); m=2/8; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.575414; -cCATTGT--- ; cor=; Ncor= a 0 973.0 187.0 11151.0 69.0 289.0 525.0 89.0 0 0 0 c 0 7664.0 10041.0 104.0 143.0 93.0 178.0 76.0 0 0 0 g 0 1582.0 133.0 150.0 143.0 312.0 11125.0 52.0 0 0 0 t 0 1759.0 1617.0 573.0 11623.0 11284.0 150.0 11761.0 0 0 0

MA1120.2_rc_shift1 (SOX13_rc)
; oligos_6nt_mkv1_m3 versus MA1120.2_rc (SOX13_rc); m=3/8; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.573594; -cCATTGT--- ; cor=; Ncor= a 0 461.0 73.0 4291.0 51.0 118.0 161.0 39.0 0 0 0 c 0 2666.0 3837.0 28.0 63.0 50.0 60.0 40.0 0 0 0 g 0 647.0 57.0 77.0 48.0 55.0 4276.0 22.0 0 0 0 t 0 778.0 585.0 156.0 4390.0 4329.0 55.0 4451.0 0 0 0

MA1152.2_shift1 (SOX15)
; oligos_6nt_mkv1_m3 versus MA1152.2 (SOX15); m=4/8; ncol2=7; w=0; offset=0; strand=D; shift=1; score=0.536612; -yywTTGT--- ; cor=; Ncor= a 0 32.0 62.0 631.0 3.0 3.0 83.0 24.0 0 0 0 c 0 554.0 412.0 3.0 3.0 2.0 21.0 2.0 0 0 0 g 0 147.0 26.0 5.0 6.0 2.0 890.0 3.0 0 0 0 t 0 267.0 501.0 362.0 988.0 994.0 5.0 971.0 0 0 0

MA0102.5_rc_shift3 (CEBPA_rc)
; oligos_6nt_mkv1_m3 versus MA0102.5_rc (CEBPA_rc); m=5/8; ncol2=10; w=0; offset=2; strand=R; shift=3; score= 0.5276; ---aTTGTGCA ; cor=; Ncor= a 0 0 0 50992.0 1411.0 1092.0 9787.0 6308.0 2053.0 10928.0 75354.0 c 0 0 0 7312.0 1381.0 340.0 1583.0 6751.0 678.0 57887.0 2365.0 g 0 0 0 16193.0 1034.0 5655.0 61538.0 3535.0 75124.0 936.0 282.0 t 0 0 0 4506.0 75177.0 71916.0 6095.0 62409.0 1148.0 9252.0 1002.0

MA0836.3_rc_shift4 (CEBPD_rc)
; oligos_6nt_mkv1_m3 versus MA0836.3_rc (CEBPD_rc); m=6/8; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.498385; ----TTGTGCA ; cor=; Ncor= a 0 0 0 0 359.0 185.0 2276.0 1831.0 292.0 1977.0 20939.0 c 0 0 0 0 404.0 75.0 377.0 2625.0 214.0 17309.0 233.0 g 0 0 0 0 315.0 652.0 17458.0 1022.0 20683.0 299.0 81.0 t 0 0 0 0 20374.0 20540.0 1341.0 15974.0 263.0 1867.0 199.0

MA1994.2_rc_shift0 (Nkx2-1_rc)
; oligos_6nt_mkv1_m3 versus MA1994.2_rc (Nkx2-1_rc); m=7/8; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.431759; TCAAGTG---- ; cor=; Ncor= a 541.0 518.0 15157.0 15106.0 316.0 343.0 886.0 0 0 0 0 c 213.0 14172.0 315.0 605.0 118.0 146.0 181.0 0 0 0 0 g 243.0 657.0 518.0 162.0 15640.0 275.0 14886.0 0 0 0 0 t 15245.0 895.0 252.0 369.0 168.0 15478.0 289.0 0 0 0 0

MA0479.2_rc_shift5 (FOXH1_rc)
; oligos_6nt_mkv1_m3 versus MA0479.2_rc (FOXH1_rc); m=8/8; ncol2=8; w=0; offset=4; strand=R; shift=5; score=0.406626; -----TGTGKA ; cor=; Ncor= a 0 0 0 0 0 1073.0 0.0 0.0 0.0 64.0 8211.0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 8211.0 0.0 6797.0 5773.0 0.0 t 0 0 0 0 0 7138.0 0.0 8211.0 1414.0 2374.0 0.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m5_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)
; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -GrAAGGTAAym ; Alignment reference a 0 0 1 2 2 0 0 0 2 2 0 1 c 0 0 0 0 0 0 0 0 0 0 1 1 g 0 2 1 0 0 2 2 0 0 0 0 0 t 0 0 0 0 0 0 0 2 0 0 1 0

MA1112.3_shift2 (NR4A1)
; oligos_7nt_mkv1_m5 versus MA1112.3 (NR4A1); m=1/9; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.560628; --AAAGGTCA-- ; cor=; Ncor= a 0 0 14313.0 15268.0 15684.0 427.0 300.0 365.0 70.0 15126.0 0 0 c 0 0 236.0 117.0 62.0 92.0 166.0 824.0 14949.0 151.0 0 0 g 0 0 823.0 333.0 128.0 12434.0 14964.0 1358.0 151.0 329.0 0 0 t 0 0 555.0 209.0 53.0 2974.0 497.0 13380.0 757.0 321.0 0 0

MA0160.3_shift2 (NR4A2)
; oligos_7nt_mkv1_m5 versus MA0160.3 (NR4A2); m=2/9; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.556688; --AAAGGTCA-- ; cor=; Ncor= a 0 0 209.0 209.0 209.0 0.0 0.0 6.0 0.0 209.0 0 0 c 0 0 0.0 0.0 5.0 0.0 0.0 22.0 209.0 4.0 0 0 g 0 0 28.0 1.0 1.0 160.0 209.0 21.0 1.0 40.0 0 0 t 0 0 22.0 18.0 0.0 49.0 2.0 209.0 14.0 0.0 0 0

MA1111.2_shift3 (NR2F2)
; oligos_7nt_mkv1_m5 versus MA1111.2 (NR2F2); m=3/9; ncol2=7; w=0; offset=2; strand=D; shift=3; score=0.516081; ---AAGGTCA-- ; cor=; Ncor= a 0 0 0 1788.0 2084.0 37.0 33.0 17.0 30.0 2111.0 0 0 c 0 0 0 37.0 15.0 16.0 12.0 22.0 1978.0 16.0 0 0 g 0 0 0 173.0 82.0 2108.0 2132.0 30.0 26.0 43.0 0 0 t 0 0 0 206.0 23.0 43.0 27.0 2135.0 170.0 34.0 0 0

MA2338.1_shift3 (Ppara)
; oligos_7nt_mkv1_m5 versus MA2338.1 (Ppara); m=4/9; ncol2=7; w=0; offset=2; strand=D; shift=3; score=0.507379; ---AAGGTCA-- ; cor=; Ncor= a 0 0 0 16299.0 17009.0 258.0 354.0 259.0 440.0 13045.0 0 0 c 0 0 0 258.0 641.0 446.0 68.0 83.0 16858.0 2036.0 0 0 g 0 0 0 788.0 328.0 17024.0 17412.0 75.0 178.0 1148.0 0 0 t 0 0 0 833.0 200.0 450.0 344.0 17761.0 702.0 1949.0 0 0

MA1121.2_rc_shift1 (TEAD2_rc)
; oligos_7nt_mkv1_m5 versus MA1121.2_rc (TEAD2_rc); m=5/9; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.469218; -GGAATGT---- ; cor=; Ncor= a 0 18.0 24.0 510.0 524.0 9.0 11.0 14.0 0 0 0 0 c 0 3.0 10.0 9.0 6.0 11.0 14.0 70.0 0 0 0 0 g 0 513.0 500.0 8.0 10.0 5.0 478.0 17.0 0 0 0 0 t 0 8.0 8.0 15.0 2.0 517.0 39.0 441.0 0 0 0 0

MA1110.3_shift4 (Nr1H4)
; oligos_7nt_mkv1_m5 versus MA1110.3 (Nr1H4); m=6/9; ncol2=6; w=0; offset=3; strand=D; shift=4; score=0.432997; ----AGGTCA-- ; cor=; Ncor= a 0 0 0 0 4597.0 13.0 31.0 1.0 163.0 4589.0 0 0 c 0 0 0 0 83.0 150.0 4.0 0.0 4351.0 29.0 0 0 g 0 0 0 0 49.0 4542.0 4671.0 0.0 10.0 118.0 0 0 t 0 0 0 0 7.0 31.0 30.0 4735.0 212.0 0.0 0 0

MA1996.2_shift4 (Nr1H2)
; oligos_7nt_mkv1_m5 versus MA1996.2 (Nr1H2); m=7/9; ncol2=6; w=0; offset=3; strand=D; shift=4; score=0.426655; ----AGGTCA-- ; cor=; Ncor= a 0 0 0 0 8549.0 88.0 91.0 61.0 147.0 8642.0 0 0 c 0 0 0 0 191.0 171.0 36.0 35.0 8483.0 51.0 0 0 g 0 0 0 0 132.0 8521.0 8740.0 41.0 72.0 241.0 0 0 t 0 0 0 0 99.0 191.0 104.0 8834.0 269.0 37.0 0 0

MA0809.3_rc_shift0 (TEAD4_rc)
; oligos_7nt_mkv1_m5 versus MA0809.3_rc (TEAD4_rc); m=8/9; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score=0.425944; TGGAATGT---- ; cor=; Ncor= a 11219.0 1494.0 2585.0 72137.0 74967.0 1502.0 1043.0 3144.0 0 0 0 0 c 1191.0 212.0 1580.0 2100.0 1025.0 569.0 3295.0 11265.0 0 0 0 0 g 3874.0 75066.0 72555.0 1176.0 1129.0 1218.0 66205.0 2414.0 0 0 0 0 t 61802.0 1314.0 1366.0 2673.0 965.0 74797.0 7543.0 61263.0 0 0 0 0

MA1717.2_rc_shift0 (ZNF784_rc)
; oligos_7nt_mkv1_m5 versus MA1717.2_rc (ZNF784_rc); m=9/9; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score=0.411604; cGGTArGT---- ; cor=; Ncor= a 1746.0 154.0 124.0 22.0 6529.0 2182.0 69.0 0.0 0 0 0 0 c 4783.0 555.0 10.0 42.0 96.0 77.0 0.0 0.0 0 0 0 0 g 559.0 6529.0 6529.0 35.0 229.0 4347.0 6529.0 6.0 0 0 0 0 t 680.0 135.0 39.0 6529.0 206.0 71.0 26.0 6529.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m2_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m2_shift1 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=11; shift=1; ncol=12; -CyAGTGTGCmm ; Alignment reference a 0 0 0 3 0 0 0 0 0 0 2 1 c 0 3 2 0 0 0 0 0 0 3 1 2 g 0 0 0 0 3 0 3 0 3 0 0 0 t 0 0 1 0 0 3 0 3 0 0 0 0

MA0143.5_rc_shift1 (SOX2_rc)
; oligos_7nt_mkv1_m2 versus MA0143.5_rc (SOX2_rc); m=1/5; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.482431; -cCATTGT---- ; cor=; Ncor= a 0 10304.0 1656.0 79277.0 1185.0 2412.0 4848.0 1385.0 0 0 0 0 c 0 54414.0 73372.0 930.0 2002.0 550.0 1243.0 418.0 0 0 0 0 g 0 6264.0 800.0 732.0 1742.0 1205.0 78356.0 436.0 0 0 0 0 t 0 14772.0 9926.0 4815.0 80825.0 81587.0 1307.0 83515.0 0 0 0 0

MA0514.3_rc_shift1 (Sox3_rc)
; oligos_7nt_mkv1_m2 versus MA0514.3_rc (Sox3_rc); m=2/5; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.480115; -cCATTGT---- ; cor=; Ncor= a 0 973.0 187.0 11151.0 69.0 289.0 525.0 89.0 0 0 0 0 c 0 7664.0 10041.0 104.0 143.0 93.0 178.0 76.0 0 0 0 0 g 0 1582.0 133.0 150.0 143.0 312.0 11125.0 52.0 0 0 0 0 t 0 1759.0 1617.0 573.0 11623.0 11284.0 150.0 11761.0 0 0 0 0

MA1120.2_rc_shift1 (SOX13_rc)
; oligos_7nt_mkv1_m2 versus MA1120.2_rc (SOX13_rc); m=3/5; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.476649; -cCATTGT---- ; cor=; Ncor= a 0 461.0 73.0 4291.0 51.0 118.0 161.0 39.0 0 0 0 0 c 0 2666.0 3837.0 28.0 63.0 50.0 60.0 40.0 0 0 0 0 g 0 647.0 57.0 77.0 48.0 55.0 4276.0 22.0 0 0 0 0 t 0 778.0 585.0 156.0 4390.0 4329.0 55.0 4451.0 0 0 0 0

MA0738.2_shift6 (HIC2)
; oligos_7nt_mkv1_m2 versus MA0738.2 (HIC2); m=4/5; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.440006; ------rTGCCM ; cor=; Ncor= a 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 c 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 g 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 t 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0

MA1994.2_rc_shift0 (Nkx2-1_rc)
; oligos_7nt_mkv1_m2 versus MA1994.2_rc (Nkx2-1_rc); m=5/5; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.407725; TCAAGTG----- ; cor=; Ncor= a 541.0 518.0 15157.0 15106.0 316.0 343.0 886.0 0 0 0 0 0 c 213.0 14172.0 315.0 605.0 118.0 146.0 181.0 0 0 0 0 0 g 243.0 657.0 518.0 162.0 15640.0 275.0 14886.0 0 0 0 0 0 t 15245.0 895.0 252.0 369.0 168.0 15478.0 289.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m4_shift2 (oligos_6nt_mkv1_m4)				; oligos_6nt_mkv1_m4; m=0 (reference); ncol1=10; shift=2; ncol=12; --cmCCGCCCwg ; Alignment reference a 0 0 1 2 0 0 1 0 0 0 2 0 c 0 0 3 3 5 5 0 5 5 5 0 1 g 0 0 0 0 0 0 4 0 0 0 1 3 t 0 0 1 0 0 0 0 0 0 0 2 1
MA0740.2_rc_shift2 (KLF14_rc)				; oligos_6nt_mkv1_m4 versus MA0740.2_rc (KLF14_rc); m=1/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.801296; --CCMCGCCCm- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_6nt_mkv1_m4 versus MA0685.2_rc (SP4_rc); m=2/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.796338; --CyCCKCCCc- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0
MA1564.2_shift2 (SP9)				; oligos_6nt_mkv1_m4 versus MA1564.2 (SP9); m=3/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.791531; --cCmCGCCCmc ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_6nt_mkv1_m4 versus MA0516.3_rc (SP2_rc); m=4/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.788356; --cCCCGCCCC- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0
MA0742.2_rc_shift2 (KLF12_rc)				; oligos_6nt_mkv1_m4 versus MA0742.2_rc (KLF12_rc); m=5/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.781777; --CCCCGCCCC- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0
MA1511.2_rc_shift2 (KLF10_rc)				; oligos_6nt_mkv1_m4 versus MA1511.2_rc (KLF10_rc); m=6/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.772437; --CCMCGCCCC- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0
MA1513.2_shift2 (KLF15)				; oligos_6nt_mkv1_m4 versus MA1513.2 (KLF15); m=7/36; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.765185; --cCCCGCCC-- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0
MA1959.2_rc_shift2 (KLF7_rc)				; oligos_6nt_mkv1_m4 versus MA1959.2_rc (KLF7_rc); m=8/36; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.760119; --CcMCGCCC-- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0
MA0079.5_rc_shift2 (SP1_rc)				; oligos_6nt_mkv1_m4 versus MA0079.5_rc (SP1_rc); m=9/36; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.752731; --CyCCKCCCC- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0
MA1961.2_rc_shift1 (PATZ1_rc)				; oligos_6nt_mkv1_m4 versus MA1961.2_rc (PATZ1_rc); m=10/36; ncol2=11; w=-1; offset=-1; strand=R; shift=1; score=0.750114; -sCCCCkCCCCs ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0
MA0753.3_shift2 (ZNF740)				; oligos_6nt_mkv1_m4 versus MA0753.3 (ZNF740); m=11/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.743389; --CCCCCCCCAc ; cor=; Ncor= a 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0
MA0493.3_rc_shift2 (KLF1_rc)				; oligos_6nt_mkv1_m4 versus MA0493.3_rc (KLF1_rc); m=12/36; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.732247; --CCmCrCCC-- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0
MA0599.1_shift1 (KLF5)				; oligos_6nt_mkv1_m4 versus MA0599.1 (KLF5); m=13/36; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.727373; -gCCMCrCCCh- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0
MA1512.2_shift2 (KLF11)				; oligos_6nt_mkv1_m4 versus MA1512.2 (KLF11); m=14/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.723797; --cCACGCCCmC ; cor=; Ncor= a 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0
MA1653.2_shift2 (ZNF148)				; oligos_6nt_mkv1_m4 versus MA1653.2 (ZNF148); m=15/36; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.720637; --CCCCTCCCcc ; cor=; Ncor= a 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0
MA1517.2_shift2 (KLF6)				; oligos_6nt_mkv1_m4 versus MA1517.2 (KLF6); m=16/36; ncol2=9; w=0; offset=0; strand=D; shift=2; score=0.718346; --cCACRCCCm- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0
MA1515.2_shift2 (KLF2)				; oligos_6nt_mkv1_m4 versus MA1515.2 (KLF2); m=17/36; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.691005; --CCmCrCCC-- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0
MA0039.5_shift2 (KLF4)				; oligos_6nt_mkv1_m4 versus MA0039.5 (KLF4); m=18/36; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.687922; --CCCCACCC-- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0
MA0746.3_shift1 (SP3)				; oligos_6nt_mkv1_m4 versus MA0746.3 (SP3); m=19/36; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.681398; -rCCACGCCCmC ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0
MA0747.2_shift2 (SP8)				; oligos_6nt_mkv1_m4 versus MA0747.2 (SP8); m=20/36; ncol2=11; w=0; offset=0; strand=D; shift=2; score=0.669074; --mCACgCCCmC ; cor=; Ncor= a 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0
MA0741.1_shift1 (KLF16)				; oligos_6nt_mkv1_m4 versus MA0741.1 (KLF16); m=21/36; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.651091; -gmCMCgCCCMC ; cor=; Ncor= a 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0
MA2328.1_shift3 (ZBED4)				; oligos_6nt_mkv1_m4 versus MA2328.1 (ZBED4); m=22/36; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.633848; ---CcCGCyCCG ; cor=; Ncor= a 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 c 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 g 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 t 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0
MA1522.2_shift2 (MAZ)				; oligos_6nt_mkv1_m4 versus MA1522.2 (MAZ); m=23/36; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.608503; --CCCCTCCc-- ; cor=; Ncor= a 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 c 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 g 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 t 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0
MA0471.3_rc_shift1 (E2F6_rc)				; oligos_6nt_mkv1_m4 versus MA0471.3_rc (E2F6_rc); m=24/36; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.54661; -TTCCCGCC--- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0
MA1516.2_shift0 (KLF3)				; oligos_6nt_mkv1_m4 versus MA1516.2 (KLF3); m=25/36; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.529068; grCCrCGCCC-- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0
MA0162.5_shift4 (EGR1)				; oligos_6nt_mkv1_m4 versus MA0162.5 (EGR1); m=26/36; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.510538; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0
MA0865.3_shift1 (E2F8)				; oligos_6nt_mkv1_m4 versus MA0865.3 (E2F8); m=27/36; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.509378; -tTCCCGCcA-- ; cor=; Ncor= a 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 c 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 g 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 t 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0
MA1122.2_rc_shift1 (TFDP1_rc)				; oligos_6nt_mkv1_m4 versus MA1122.2_rc (TFDP1_rc); m=28/36; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.504212; -TTCCCGCs--- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0
MA0748.3_rc_shift4 (YY2_rc)				; oligos_6nt_mkv1_m4 versus MA0748.3_rc (YY2_rc); m=29/36; ncol2=7; w=0; offset=2; strand=R; shift=4; score=0.500677; ----CCGCCAT- ; cor=; Ncor= a 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 0 c 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 0 g 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 0 t 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0 0
MA1965.2_shift4 (SP5)				; oligos_6nt_mkv1_m4 versus MA1965.2 (SP5); m=30/36; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.485409; ----CCTCCC-- ; cor=; Ncor= a 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0
MA0733.2_shift4 (EGR4)				; oligos_6nt_mkv1_m4 versus MA0733.2 (EGR4); m=31/36; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.480207; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0
MA1578.2_shift4 (VEZF1)				; oligos_6nt_mkv1_m4 versus MA1578.2 (VEZF1); m=32/36; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.473678; ----CCCCCC-- ; cor=; Ncor= a 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 c 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 g 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 t 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0
MA0732.2_shift4 (EGR3)				; oligos_6nt_mkv1_m4 versus MA0732.2 (EGR3); m=33/36; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.47345; ----mCGCCCMC ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0
MA0695.2_shift1 (ZBTB7C)				; oligos_6nt_mkv1_m4 versus MA0695.2 (ZBTB7C); m=34/36; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.458517; -cgACCACC--- ; cor=; Ncor= a 0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 0 0 0 c 0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 0 0 0 g 0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 0 0 0 t 0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 0 0 0
MA0472.2_shift4 (EGR2)				; oligos_6nt_mkv1_m4 versus MA0472.2 (EGR2); m=35/36; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.453967; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0
MA1979.2_rc_shift5 (ZNF416_rc)				; oligos_6nt_mkv1_m4 versus MA1979.2_rc (ZNF416_rc); m=36/36; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.403213; -----tGCCCAG ; cor=; Ncor= a 0 0 0 0 0 66.0 18.0 3.0 3.0 2.0 336.0 3.0 c 0 0 0 0 0 29.0 3.0 341.0 335.0 335.0 1.0 7.0 g 0 0 0 0 0 38.0 320.0 1.0 5.0 7.0 6.0 334.0 t 0 0 0 0 0 212.0 4.0 0.0 2.0 1.0 2.0 1.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m4_shift1 (oligos_7nt_mkv1_m4)				; oligos_7nt_mkv1_m4; m=0 (reference); ncol1=11; shift=1; ncol=12; -hmCCCGSCCWK ; Alignment reference a 0 1 2 0 0 0 0 0 0 0 3 0 c 0 1 2 4 4 4 0 3 4 4 0 0 g 0 0 0 0 0 0 4 1 0 0 0 3 t 0 2 0 0 0 0 0 0 0 0 1 1
MA0599.1_shift1 (KLF5)				; oligos_7nt_mkv1_m4 versus MA0599.1 (KLF5); m=1/29; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.724476; -gCCMCrCCCh- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0
MA1961.2_rc_shift1 (PATZ1_rc)				; oligos_7nt_mkv1_m4 versus MA1961.2_rc (PATZ1_rc); m=2/29; ncol2=11; w=0; offset=0; strand=R; shift=1; score=0.719114; -sCCCCkCCCCs ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0
MA0740.2_rc_shift2 (KLF14_rc)				; oligos_7nt_mkv1_m4 versus MA0740.2_rc (KLF14_rc); m=3/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.71719; --CCMCGCCCm- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0
MA0742.2_rc_shift2 (KLF12_rc)				; oligos_7nt_mkv1_m4 versus MA0742.2_rc (KLF12_rc); m=4/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.701656; --CCCCGCCCC- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0
MA1513.2_shift2 (KLF15)				; oligos_7nt_mkv1_m4 versus MA1513.2 (KLF15); m=5/29; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.701339; --cCCCGCCC-- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_7nt_mkv1_m4 versus MA0516.3_rc (SP2_rc); m=6/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.695016; --cCCCGCCCC- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_7nt_mkv1_m4 versus MA0685.2_rc (SP4_rc); m=7/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.685855; --CyCCKCCCc- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0
MA1564.2_shift2 (SP9)				; oligos_7nt_mkv1_m4 versus MA1564.2 (SP9); m=8/29; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.684835; --cCmCGCCCmc ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0
MA1511.2_rc_shift2 (KLF10_rc)				; oligos_7nt_mkv1_m4 versus MA1511.2_rc (KLF10_rc); m=9/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.678666; --CCMCGCCCC- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0
MA1959.2_rc_shift2 (KLF7_rc)				; oligos_7nt_mkv1_m4 versus MA1959.2_rc (KLF7_rc); m=10/29; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.652345; --CcMCGCCC-- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0
MA0079.5_rc_shift2 (SP1_rc)				; oligos_7nt_mkv1_m4 versus MA0079.5_rc (SP1_rc); m=11/29; ncol2=9; w=0; offset=1; strand=R; shift=2; score=0.643125; --CyCCKCCCC- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0
MA0493.3_rc_shift2 (KLF1_rc)				; oligos_7nt_mkv1_m4 versus MA0493.3_rc (KLF1_rc); m=12/29; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.638992; --CCmCrCCC-- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0
MA1517.2_shift2 (KLF6)				; oligos_7nt_mkv1_m4 versus MA1517.2 (KLF6); m=13/29; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.630201; --cCACRCCCm- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0
MA1515.2_shift2 (KLF2)				; oligos_7nt_mkv1_m4 versus MA1515.2 (KLF2); m=14/29; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.607717; --CCmCrCCC-- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0
MA0471.3_rc_shift1 (E2F6_rc)				; oligos_7nt_mkv1_m4 versus MA0471.3_rc (E2F6_rc); m=15/29; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.602932; -TTCCCGCC--- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0
MA0747.2_shift2 (SP8)				; oligos_7nt_mkv1_m4 versus MA0747.2 (SP8); m=16/29; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.601505; --mCACgCCCmC ; cor=; Ncor= a 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0
MA2328.1_shift3 (ZBED4)				; oligos_7nt_mkv1_m4 versus MA2328.1 (ZBED4); m=17/29; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.587285; ---CcCGCyCCG ; cor=; Ncor= a 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 c 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 g 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 t 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0
MA0865.3_shift1 (E2F8)				; oligos_7nt_mkv1_m4 versus MA0865.3 (E2F8); m=18/29; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.581994; -tTCCCGCcA-- ; cor=; Ncor= a 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 c 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 g 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 t 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0
MA0039.5_shift2 (KLF4)				; oligos_7nt_mkv1_m4 versus MA0039.5 (KLF4); m=19/29; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.575979; --CCCCACCC-- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0
MA1122.2_rc_shift1 (TFDP1_rc)				; oligos_7nt_mkv1_m4 versus MA1122.2_rc (TFDP1_rc); m=20/29; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.563038; -TTCCCGCs--- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0
MA1516.2_shift0 (KLF3)				; oligos_7nt_mkv1_m4 versus MA1516.2 (KLF3); m=21/29; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.562226; grCCrCGCCC-- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0
MA1522.2_shift2 (MAZ)				; oligos_7nt_mkv1_m4 versus MA1522.2 (MAZ); m=22/29; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.532182; --CCCCTCCc-- ; cor=; Ncor= a 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 c 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 g 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 t 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0
MA0162.5_shift4 (EGR1)				; oligos_7nt_mkv1_m4 versus MA0162.5 (EGR1); m=23/29; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.441339; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0
MA0733.2_shift4 (EGR4)				; oligos_7nt_mkv1_m4 versus MA0733.2 (EGR4); m=24/29; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.422864; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0
MA0732.2_shift4 (EGR3)				; oligos_7nt_mkv1_m4 versus MA0732.2 (EGR3); m=25/29; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.419323; ----mCGCCCMC ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0
MA1965.2_shift4 (SP5)				; oligos_7nt_mkv1_m4 versus MA1965.2 (SP5); m=26/29; ncol2=6; w=0; offset=3; strand=D; shift=4; score=0.412567; ----CCTCCC-- ; cor=; Ncor= a 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0
MA0472.2_shift4 (EGR2)				; oligos_7nt_mkv1_m4 versus MA0472.2 (EGR2); m=27/29; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.410854; ----mCGCCCAC ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0
MA1979.2_rc_shift5 (ZNF416_rc)				; oligos_7nt_mkv1_m4 versus MA1979.2_rc (ZNF416_rc); m=28/29; ncol2=10; w=0; offset=4; strand=R; shift=5; score=0.404315; -----tGCCCAG ; cor=; Ncor= a 0 0 0 0 0 66.0 18.0 3.0 3.0 2.0 336.0 3.0 c 0 0 0 0 0 29.0 3.0 341.0 335.0 335.0 1.0 7.0 g 0 0 0 0 0 38.0 320.0 1.0 5.0 7.0 6.0 334.0 t 0 0 0 0 0 212.0 4.0 0.0 2.0 1.0 2.0 1.0
MA1578.2_shift3 (VEZF1)				; oligos_7nt_mkv1_m4 versus MA1578.2 (VEZF1); m=29/29; ncol2=6; w=0; offset=2; strand=D; shift=3; score=0.400179; ---CCCCCC--- ; cor=; Ncor= a 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 c 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 g 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m2_shift5 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=5; ncol=15; -----dCCTTCCCcm ; Alignment reference a 0 0 0 0 0 2 0 0 0 0 0 0 0 1 2 c 0 0 0 0 0 0 5 6 0 0 6 6 6 4 2 g 0 0 0 0 0 2 1 0 0 0 0 0 0 0 1 t 0 0 0 0 0 2 0 0 6 6 0 0 0 1 1
MA1630.3_rc_shift5 (ZNF281_rc)				; oligos_6nt_mkv1_m2 versus MA1630.3_rc (ZNF281_rc); m=1/19; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.70725; -----CCCCTCCCCC ; cor=; Ncor= a 0 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 c 0 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 g 0 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 t 0 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0
MA1627.2_shift6 (Wt1)				; oligos_6nt_mkv1_m2 versus MA1627.2 (Wt1); m=2/19; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.608693; ------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0
MA1117.2_shift7 (RELB)				; oligos_6nt_mkv1_m2 versus MA1117.2 (RELB); m=3/19; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.554038; -------ATTCCCC- ; cor=; Ncor= a 0 0 0 0 0 0 0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 0 c 0 0 0 0 0 0 0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 0 g 0 0 0 0 0 0 0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 0 t 0 0 0 0 0 0 0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 0
MA0687.2_rc_shift5 (SPIC_rc)				; oligos_6nt_mkv1_m2 versus MA0687.2_rc (SPIC_rc); m=4/19; ncol2=13; w=0; offset=0; strand=R; shift=5; score=0.544629; -----tACTTCCksW ; cor=; Ncor= a 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 c 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 g 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 t 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0
MA1116.2_rc_shift8 (RBPJ_rc)				; oligos_6nt_mkv1_m2 versus MA1116.2_rc (RBPJ_rc); m=5/19; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.515806; --------TTCCCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 c 0 0 0 0 0 0 0 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 g 0 0 0 0 0 0 0 0 15.0 0.0 8.0 20.0 25.0 12.0 0 t 0 0 0 0 0 0 0 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0
MA1121.2_shift5 (TEAD2)				; oligos_6nt_mkv1_m2 versus MA1121.2 (TEAD2); m=6/19; ncol2=7; w=0; offset=0; strand=D; shift=5; score=0.510125; -----ACATTCC--- ; cor=; Ncor= a 0 0 0 0 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 c 0 0 0 0 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 g 0 0 0 0 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 t 0 0 0 0 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0
MA0528.3_rc_shift5 (ZNF263_rc)				; oligos_6nt_mkv1_m2 versus MA0528.3_rc (ZNF263_rc); m=7/19; ncol2=7; w=0; offset=0; strand=R; shift=5; score=0.502021; -----TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0
MA0471.3_rc_shift8 (E2F6_rc)				; oligos_6nt_mkv1_m2 versus MA0471.3_rc (E2F6_rc); m=8/19; ncol2=8; w=0; offset=3; strand=R; shift=8; score=0.499249; --------TTCCCGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 c 0 0 0 0 0 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 g 0 0 0 0 0 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 t 0 0 0 0 0 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0
MA1122.2_rc_shift8 (TFDP1_rc)				; oligos_6nt_mkv1_m2 versus MA1122.2_rc (TFDP1_rc); m=9/19; ncol2=8; w=0; offset=3; strand=R; shift=8; score=0.489442; --------TTCCCGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 c 0 0 0 0 0 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 g 0 0 0 0 0 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 t 0 0 0 0 0 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0
MA2326.1_rc_shift7 (IKZF2_rc)				; oligos_6nt_mkv1_m2 versus MA2326.1_rc (IKZF2_rc); m=10/19; ncol2=6; w=0; offset=2; strand=R; shift=7; score=0.468276; -------CTTCCT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 43.0 18.0 88.0 112.0 21.0 6.0 0 0 c 0 0 0 0 0 0 0 11273.0 26.0 17.0 11270.0 11244.0 79.0 0 0 g 0 0 0 0 0 0 0 57.0 191.0 25.0 7.0 127.0 208.0 0 0 t 0 0 0 0 0 0 0 21.0 11159.0 11264.0 5.0 2.0 11101.0 0 0
MA1965.2_shift7 (SP5)				; oligos_6nt_mkv1_m2 versus MA1965.2 (SP5); m=11/19; ncol2=6; w=0; offset=2; strand=D; shift=7; score=0.467794; -------CCTCCC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0
MA1711.2_shift4 (ZNF343)				; oligos_6nt_mkv1_m2 versus MA1711.2 (ZNF343); m=12/19; ncol2=16; w=-1; offset=-1; strand=D; shift=4; score=0.454949; ----cCGCTTCmCcr ; cor=; Ncor= a 0 0 0 0 10105.0 4185.0 4153.0 0.0 19.0 0.0 0.0 33687.0 596.0 3426.0 18171.0 c 0 0 0 0 24859.0 37120.0 151.0 48708.0 27.0 34.0 48704.0 21143.0 46517.0 40351.0 3888.0 g 0 0 0 0 10803.0 1986.0 47061.0 0.0 0.0 4.0 0.0 860.0 2241.0 9030.0 15622.0 t 0 0 0 0 2940.0 9478.0 489.0 8.0 48711.0 48706.0 0.0 3644.0 2021.0 6764.0 11027.0
MA1597.1_rc_shift0 (ZNF528_rc)				; oligos_6nt_mkv1_m2 versus MA1597.1_rc (ZNF528_rc); m=13/19; ncol2=17; w=-5; offset=-5; strand=R; shift=0; score=0.448577; GaAATGgCTTCCCTg ; cor=; Ncor= a 34.0 414.0 504.0 547.0 1.0 8.0 113.0 2.0 7.0 2.0 2.0 6.0 8.0 19.0 48.0 c 8.0 62.0 14.0 11.0 7.0 3.0 54.0 608.0 26.0 3.0 590.0 598.0 573.0 61.0 64.0 g 558.0 129.0 97.0 47.0 2.0 590.0 414.0 1.0 4.0 3.0 2.0 5.0 3.0 12.0 404.0 t 16.0 11.0 1.0 11.0 606.0 15.0 35.0 5.0 579.0 608.0 22.0 7.0 32.0 524.0 100.0
MA1154.2_shift6 (ZNF282)				; oligos_6nt_mkv1_m2 versus MA1154.2 (ZNF282); m=14/19; ncol2=15; w=0; offset=1; strand=D; shift=6; score=0.440098; ------cTTTCCCmy ; cor=; Ncor= a 0 0 0 0 0 0 21.0 39.0 16.0 3.0 0.0 0.0 0.0 140.0 12.0 c 0 0 0 0 0 0 196.0 21.0 0.0 2.0 209.0 208.0 205.0 99.0 132.0 g 0 0 0 0 0 0 50.0 7.0 8.0 3.0 2.0 0.0 3.0 0.0 2.0 t 0 0 0 0 0 0 45.0 378.0 387.0 380.0 0.0 1.0 2.0 21.0 126.0
MA0144.3_rc_shift8 (STAT3_rc)				; oligos_6nt_mkv1_m2 versus MA0144.3_rc (STAT3_rc); m=15/19; ncol2=9; w=0; offset=3; strand=R; shift=8; score=0.437415; --------TTCCmrG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 402.0 0.0 6472.0 13000.0 1029.0 c 0 0 0 0 0 0 0 0 0.0 0.0 18686.0 20046.0 11456.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 7780.0 19585.0 t 0 0 0 0 0 0 0 0 21620.0 21620.0 2532.0 1574.0 3692.0 840.0 1006.0
MA0137.4_rc_shift8 (STAT1_rc)				; oligos_6nt_mkv1_m2 versus MA0137.4_rc (STAT1_rc); m=16/19; ncol2=9; w=0; offset=3; strand=R; shift=8; score=0.423871; --------TTCCyrG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 167.0 0.0 253.0 1511.0 0.0 c 0 0 0 0 0 0 0 0 0.0 9.0 3426.0 3466.0 1637.0 0.0 6.0 g 0 0 0 0 0 0 0 0 5.0 0.0 7.0 0.0 0.0 2009.0 3262.0 t 0 0 0 0 0 0 0 0 3624.0 3620.0 29.0 163.0 1739.0 109.0 361.0
MA1625.2_shift8 (Stat5b)				; oligos_6nt_mkv1_m2 versus MA1625.2 (Stat5b); m=17/19; ncol2=9; w=0; offset=3; strand=D; shift=8; score=0.423785; --------TTCCcAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 51.0 92.0 32.0 74.0 462.0 2474.0 10.0 c 0 0 0 0 0 0 0 0 54.0 34.0 2666.0 2176.0 1746.0 60.0 16.0 g 0 0 0 0 0 0 0 0 51.0 34.0 23.0 43.0 127.0 150.0 2717.0 t 0 0 0 0 0 0 0 0 2604.0 2600.0 39.0 467.0 425.0 76.0 17.0
MA2125.1_shift8 (Zfp809)				; oligos_6nt_mkv1_m2 versus MA2125.1 (Zfp809); m=18/19; ncol2=9; w=0; offset=3; strand=D; shift=8; score=0.409015; --------wTCCCAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 c 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 g 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 t 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0
MA0101.1_shift2 (REL)				; oligos_6nt_mkv1_m2 versus MA0101.1 (REL); m=19/19; ncol2=10; w=-3; offset=-3; strand=D; shift=2; score=0.401029; --sGGrmwTTCC--- ; cor=; Ncor= a 0 0 0.0 0.0 1.0 5.0 6.0 5.0 1.0 2.0 0.0 1.0 0 0 0 c 0 0 5.0 1.0 0.0 1.0 5.0 1.0 0.0 0.0 15.0 16.0 0 0 0 g 0 0 8.0 15.0 15.0 9.0 3.0 1.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 4.0 1.0 1.0 2.0 3.0 10.0 16.0 15.0 2.0 0.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m1_shift4 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=4; ncol=14; ----bdCGGGGAvR ; Alignment reference a 0 0 0 0 0 1 0 0 0 0 0 4 1 3 c 0 0 0 0 1 0 4 0 0 0 0 0 2 0 g 0 0 0 0 2 2 0 4 4 4 4 0 1 1 t 0 0 0 0 1 1 0 0 0 0 0 0 0 0
MA2125.1_rc_shift4 (Zfp809_rc)				; oligos_6nt_mkv1_m1 versus MA2125.1_rc (Zfp809_rc); m=1/24; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.65967; ----gGCTGGGAw- ; cor=; Ncor= a 0 0 0 0 242.0 61.0 26.0 37.0 18.0 21.0 25.0 1578.0 690.0 0 c 0 0 0 0 115.0 99.0 1572.0 73.0 16.0 14.0 18.0 23.0 81.0 0 g 0 0 0 0 1091.0 1218.0 35.0 26.0 1621.0 1610.0 1607.0 41.0 66.0 0 t 0 0 0 0 217.0 287.0 32.0 1529.0 10.0 20.0 15.0 23.0 828.0 0
MA1122.2_shift4 (TFDP1)				; oligos_6nt_mkv1_m1 versus MA1122.2 (TFDP1); m=2/24; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.609376; ----sGCGGGAA-- ; cor=; Ncor= a 0 0 0 0 263.0 48.0 28.0 14.0 36.0 27.0 1855.0 1645.0 0 0 c 0 0 0 0 684.0 71.0 1886.0 54.0 80.0 32.0 24.0 170.0 0 0 g 0 0 0 0 940.0 1862.0 22.0 1932.0 1865.0 1919.0 98.0 137.0 0 0 t 0 0 0 0 120.0 26.0 71.0 7.0 26.0 29.0 30.0 55.0 0 0
MA0471.3_shift4 (E2F6)				; oligos_6nt_mkv1_m1 versus MA0471.3 (E2F6); m=3/24; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.593826; ----GGCGGGAA-- ; cor=; Ncor= a 0 0 0 0 2110.0 266.0 3856.0 1173.0 338.0 354.0 29337.0 25725.0 0 0 c 0 0 0 0 1148.0 837.0 26424.0 539.0 434.0 834.0 1171.0 1595.0 0 0 g 0 0 0 0 29387.0 31790.0 693.0 30573.0 31973.0 31614.0 2322.0 5021.0 0 0 t 0 0 0 0 453.0 205.0 2125.0 813.0 353.0 296.0 268.0 757.0 0 0
MA1513.2_rc_shift3 (KLF15_rc)				; oligos_6nt_mkv1_m1 versus MA1513.2_rc (KLF15_rc); m=4/24; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.566126; ---GGGCGGGg--- ; cor=; Ncor= a 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 c 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 g 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 t 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0
MA0865.3_rc_shift3 (E2F8_rc)				; oligos_6nt_mkv1_m1 versus MA0865.3_rc (E2F8_rc); m=5/24; ncol2=9; w=-1; offset=-1; strand=R; shift=3; score=0.558265; ---TgGCGGGAa-- ; cor=; Ncor= a 0 0 0 97.0 274.0 15.0 13.0 13.0 0.0 16.0 1566.0 1012.0 0 0 c 0 0 0 95.0 537.0 26.0 1566.0 6.0 374.0 170.0 96.0 78.0 0 0 g 0 0 0 128.0 1566.0 1566.0 7.0 1566.0 1566.0 1566.0 237.0 321.0 0 0 t 0 0 0 1566.0 104.0 1.0 39.0 44.0 12.0 78.0 405.0 155.0 0 0
MA1959.2_shift3 (KLF7)				; oligos_6nt_mkv1_m1 versus MA1959.2 (KLF7); m=6/24; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.544709; ---GGGCGKgG--- ; cor=; Ncor= a 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 c 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 g 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 t 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0
MA1117.2_rc_shift7 (RELB_rc)				; oligos_6nt_mkv1_m1 versus MA1117.2_rc (RELB_rc); m=7/24; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.534848; -------GGGGAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 73.0 72.0 178.0 3044.0 2814.0 173.0 c 0 0 0 0 0 0 0 107.0 58.0 28.0 40.0 53.0 159.0 157.0 g 0 0 0 0 0 0 0 3035.0 3013.0 3098.0 2928.0 103.0 107.0 127.0 t 0 0 0 0 0 0 0 79.0 146.0 92.0 144.0 90.0 210.0 2833.0
MA0493.3_shift3 (KLF1)				; oligos_6nt_mkv1_m1 versus MA0493.3 (KLF1); m=8/24; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.530836; ---GGGyGkGG--- ; cor=; Ncor= a 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 c 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 g 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 t 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0
MA0742.2_shift2 (KLF12)				; oligos_6nt_mkv1_m1 versus MA0742.2 (KLF12); m=9/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.524215; --GGGGCGGGG--- ; cor=; Ncor= a 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 c 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 g 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 t 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0
MA1511.2_shift2 (KLF10)				; oligos_6nt_mkv1_m1 versus MA1511.2 (KLF10); m=10/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.510916; --GGGGCGKGG--- ; cor=; Ncor= a 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 c 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 g 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 t 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0
MA0516.3_shift2 (SP2)				; oligos_6nt_mkv1_m1 versus MA0516.3 (SP2); m=11/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.510909; --GGGGCGGGg--- ; cor=; Ncor= a 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 c 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 g 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 t 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0
MA0685.2_shift2 (SP4)				; oligos_6nt_mkv1_m1 versus MA0685.2 (SP4); m=12/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.504546; --gGGGMGGrG--- ; cor=; Ncor= a 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 c 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 g 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 t 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0
MA0740.2_shift2 (KLF14)				; oligos_6nt_mkv1_m1 versus MA0740.2 (KLF14); m=13/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.502958; --kGGGCGKGG--- ; cor=; Ncor= a 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 c 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 g 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 t 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0
MA0758.1_rc_shift0 (E2F7_rc)				; oligos_6nt_mkv1_m1 versus MA0758.1_rc (E2F7_rc); m=14/24; ncol2=14; w=-4; offset=-4; strand=R; shift=0; score=0.500659; wTTTGGCGGGAAAa ; cor=; Ncor= a 292.0 43.0 6.0 5.0 1.0 0.0 0.0 0.0 0.0 0.0 957.0 963.0 891.0 577.0 c 2.0 0.0 3.0 0.0 17.0 0.0 995.0 0.0 10.0 2.0 0.0 0.0 18.0 182.0 g 2.0 2.0 1.0 0.0 977.0 986.0 1.0 965.0 961.0 960.0 1.0 3.0 7.0 72.0 t 608.0 859.0 930.0 912.0 0.0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 38.0 222.0
MA0079.5_shift2 (SP1)				; oligos_6nt_mkv1_m1 versus MA0079.5 (SP1); m=15/24; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score=0.499432; --GGGGMGGrG--- ; cor=; Ncor= a 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 c 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 g 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 t 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0
MA0599.1_rc_shift2 (KLF5_rc)				; oligos_6nt_mkv1_m1 versus MA0599.1_rc (KLF5_rc); m=16/24; ncol2=10; w=-2; offset=-2; strand=R; shift=2; score=0.47201; --dGGGyGKGGc-- ; cor=; Ncor= a 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0
MA1515.2_rc_shift3 (KLF2_rc)				; oligos_6nt_mkv1_m1 versus MA1515.2_rc (KLF2_rc); m=17/24; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.469613; ---GGGyGkGG--- ; cor=; Ncor= a 0 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 346.0 0 0 0 c 0 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 495.0 0 0 0 g 0 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 4622.0 0 0 0 t 0 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0 741.0 0 0 0
MA0039.5_rc_shift3 (KLF4_rc)				; oligos_6nt_mkv1_m1 versus MA0039.5_rc (KLF4_rc); m=18/24; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.46255; ---GGGTGGGG--- ; cor=; Ncor= a 0 0 0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 0 0 0 c 0 0 0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 0 0 0 g 0 0 0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 0 0 0 t 0 0 0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 0 0 0
MA1965.2_rc_shift8 (SP5_rc)				; oligos_6nt_mkv1_m1 versus MA1965.2_rc (SP5_rc); m=19/24; ncol2=6; w=0; offset=4; strand=R; shift=8; score=0.454815; --------GGGAGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 0.0 20465.0 0.0 4.0 c 0 0 0 0 0 0 0 0 92.0 234.0 0.0 231.0 403.0 3.0 g 0 0 0 0 0 0 0 0 20604.0 20451.0 20649.0 0.0 20286.0 20683.0 t 0 0 0 0 0 0 0 0 0.0 11.0 47.0 0.0 7.0 6.0
MA1961.2_shift1 (PATZ1)				; oligos_6nt_mkv1_m1 versus MA1961.2 (PATZ1); m=20/24; ncol2=11; w=-3; offset=-3; strand=D; shift=1; score=0.45035; -sGGGGmGGGGs-- ; cor=; Ncor= a 0 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 0 c 0 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 0 g 0 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 0 t 0 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0 0
MA1522.2_rc_shift3 (MAZ_rc)				; oligos_6nt_mkv1_m1 versus MA1522.2_rc (MAZ_rc); m=21/24; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.449447; ---gGGAGGGG--- ; cor=; Ncor= a 0 0 0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 0 0 0 c 0 0 0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 0 0 0 g 0 0 0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 0 0 0 t 0 0 0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 0 0 0
MA0738.2_rc_shift7 (HIC2_rc)				; oligos_6nt_mkv1_m1 versus MA0738.2_rc (HIC2_rc); m=22/24; ncol2=6; w=0; offset=3; strand=R; shift=7; score=0.422133; -------KGGCAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 59.0 0.0 151.0 4891.0 367.0 0 c 0 0 0 0 0 0 0 0.0 0.0 14.0 4891.0 0.0 2285.0 0 g 0 0 0 0 0 0 0 3425.0 4891.0 4891.0 354.0 117.0 394.0 0 t 0 0 0 0 0 0 0 1466.0 435.0 23.0 494.0 0.0 2606.0 0
MA0528.3_shift8 (ZNF263)				; oligos_6nt_mkv1_m1 versus MA0528.3 (ZNF263); m=23/24; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.411376; --------GGGAGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1610.0 789.0 950.0 53900.0 830.0 695.0 c 0 0 0 0 0 0 0 0 1659.0 1544.0 972.0 1660.0 966.0 2190.0 g 0 0 0 0 0 0 0 0 51804.0 52818.0 53435.0 163.0 52875.0 52741.0 t 0 0 0 0 0 0 0 0 1270.0 1192.0 986.0 620.0 1672.0 717.0
MA1630.3_shift1 (ZNF281)				; oligos_6nt_mkv1_m1 versus MA1630.3 (ZNF281); m=24/24; ncol2=10; w=-3; offset=-3; strand=D; shift=1; score=0.40437; -GGGGGAGGGG--- ; cor=; Ncor= a 0 1.0 1.0 35.0 1.0 1.0 720.0 122.0 1.0 41.0 47.0 0 0 0 c 0 1.0 1.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 27.0 0 0 0 g 0 998.0 998.0 963.0 998.0 998.0 1.0 772.0 998.0 940.0 920.0 0 0 0 t 0 1.0 1.0 1.0 1.0 1.0 96.0 105.0 1.0 18.0 7.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; wkCCTTCCCCma ; Alignment reference a 3 1 0 0 0 0 0 0 0 0 2 2 c 0 0 5 5 0 0 5 5 5 4 2 1 g 0 2 0 0 0 0 0 0 0 0 1 1 t 2 2 0 0 5 5 0 0 0 1 0 1
MA1630.3_rc_shift1 (ZNF281_rc)				; oligos_7nt_mkv1_m1 versus MA1630.3_rc (ZNF281_rc); m=1/9; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.609465; -CCCCTCCCCC- ; cor=; Ncor= a 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 c 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 g 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 t 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0
MA1627.2_shift2 (Wt1)				; oligos_7nt_mkv1_m1 versus MA1627.2 (Wt1); m=2/9; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.598446; --cCTCCCCCAC ; cor=; Ncor= a 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0
MA1122.2_rc_shift4 (TFDP1_rc)				; oligos_7nt_mkv1_m1 versus MA1122.2_rc (TFDP1_rc); m=3/9; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.491774; ----TTCCCGCs ; cor=; Ncor= a 0 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 c 0 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 g 0 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 t 0 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0
MA0471.3_rc_shift4 (E2F6_rc)				; oligos_7nt_mkv1_m1 versus MA0471.3_rc (E2F6_rc); m=4/9; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.475417; ----TTCCCGCC ; cor=; Ncor= a 0 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 c 0 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 g 0 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 t 0 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0
MA1117.2_shift3 (RELB)				; oligos_7nt_mkv1_m1 versus MA1117.2 (RELB); m=5/9; ncol2=7; w=0; offset=3; strand=D; shift=3; score=0.468964; ---ATTCCCC-- ; cor=; Ncor= a 0 0 0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 0 0 c 0 0 0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 0 0 g 0 0 0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 0 0 t 0 0 0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 0 0
MA1154.2_shift2 (ZNF282)				; oligos_7nt_mkv1_m1 versus MA1154.2 (ZNF282); m=6/9; ncol2=15; w=0; offset=2; strand=D; shift=2; score=0.43362; --cTTTCCCmyA ; cor=; Ncor= a 0 0 21.0 39.0 16.0 3.0 0.0 0.0 0.0 140.0 12.0 256.0 c 0 0 196.0 21.0 0.0 2.0 209.0 208.0 205.0 99.0 132.0 3.0 g 0 0 50.0 7.0 8.0 3.0 2.0 0.0 3.0 0.0 2.0 37.0 t 0 0 45.0 378.0 387.0 380.0 0.0 1.0 2.0 21.0 126.0 61.0
MA0528.3_rc_shift1 (ZNF263_rc)				; oligos_7nt_mkv1_m1 versus MA0528.3_rc (ZNF263_rc); m=7/9; ncol2=7; w=0; offset=1; strand=R; shift=1; score=0.431713; -TCCTCCC---- ; cor=; Ncor= a 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 0 c 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 0 g 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 0 t 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0 0
MA1121.2_shift1 (TEAD2)				; oligos_7nt_mkv1_m1 versus MA1121.2 (TEAD2); m=8/9; ncol2=7; w=0; offset=1; strand=D; shift=1; score=0.416732; -ACATTCC---- ; cor=; Ncor= a 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 0 c 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 0 g 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 0 t 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0 0
MA1116.2_rc_shift4 (RBPJ_rc)				; oligos_7nt_mkv1_m1 versus MA1116.2_rc (RBPJ_rc); m=9/9; ncol2=6; w=0; offset=4; strand=R; shift=4; score=0.40085; ----TTCCCA-- ; cor=; Ncor= a 0 0 0 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 c 0 0 0 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 g 0 0 0 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 t 0 0 0 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m3_shift1 (oligos_6nt_mkv1_m3)				; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -CyAGTGTGcm ; Alignment reference a 0 1 0 5 0 0 0 0 0 1 3 c 0 4 3 0 0 0 0 0 0 3 2 g 0 0 0 0 4 0 5 0 5 0 0 t 0 0 2 0 1 5 0 5 0 1 0
MA0143.5_rc_shift1 (SOX2_rc)				; oligos_6nt_mkv1_m3 versus MA0143.5_rc (SOX2_rc); m=1/8; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.578064; -cCATTGT--- ; cor=; Ncor= a 0 10304.0 1656.0 79277.0 1185.0 2412.0 4848.0 1385.0 0 0 0 c 0 54414.0 73372.0 930.0 2002.0 550.0 1243.0 418.0 0 0 0 g 0 6264.0 800.0 732.0 1742.0 1205.0 78356.0 436.0 0 0 0 t 0 14772.0 9926.0 4815.0 80825.0 81587.0 1307.0 83515.0 0 0 0
MA0514.3_rc_shift1 (Sox3_rc)				; oligos_6nt_mkv1_m3 versus MA0514.3_rc (Sox3_rc); m=2/8; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.575414; -cCATTGT--- ; cor=; Ncor= a 0 973.0 187.0 11151.0 69.0 289.0 525.0 89.0 0 0 0 c 0 7664.0 10041.0 104.0 143.0 93.0 178.0 76.0 0 0 0 g 0 1582.0 133.0 150.0 143.0 312.0 11125.0 52.0 0 0 0 t 0 1759.0 1617.0 573.0 11623.0 11284.0 150.0 11761.0 0 0 0
MA1120.2_rc_shift1 (SOX13_rc)				; oligos_6nt_mkv1_m3 versus MA1120.2_rc (SOX13_rc); m=3/8; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.573594; -cCATTGT--- ; cor=; Ncor= a 0 461.0 73.0 4291.0 51.0 118.0 161.0 39.0 0 0 0 c 0 2666.0 3837.0 28.0 63.0 50.0 60.0 40.0 0 0 0 g 0 647.0 57.0 77.0 48.0 55.0 4276.0 22.0 0 0 0 t 0 778.0 585.0 156.0 4390.0 4329.0 55.0 4451.0 0 0 0
MA1152.2_shift1 (SOX15)				; oligos_6nt_mkv1_m3 versus MA1152.2 (SOX15); m=4/8; ncol2=7; w=0; offset=0; strand=D; shift=1; score=0.536612; -yywTTGT--- ; cor=; Ncor= a 0 32.0 62.0 631.0 3.0 3.0 83.0 24.0 0 0 0 c 0 554.0 412.0 3.0 3.0 2.0 21.0 2.0 0 0 0 g 0 147.0 26.0 5.0 6.0 2.0 890.0 3.0 0 0 0 t 0 267.0 501.0 362.0 988.0 994.0 5.0 971.0 0 0 0
MA0102.5_rc_shift3 (CEBPA_rc)				; oligos_6nt_mkv1_m3 versus MA0102.5_rc (CEBPA_rc); m=5/8; ncol2=10; w=0; offset=2; strand=R; shift=3; score= 0.5276; ---aTTGTGCA ; cor=; Ncor= a 0 0 0 50992.0 1411.0 1092.0 9787.0 6308.0 2053.0 10928.0 75354.0 c 0 0 0 7312.0 1381.0 340.0 1583.0 6751.0 678.0 57887.0 2365.0 g 0 0 0 16193.0 1034.0 5655.0 61538.0 3535.0 75124.0 936.0 282.0 t 0 0 0 4506.0 75177.0 71916.0 6095.0 62409.0 1148.0 9252.0 1002.0
MA0836.3_rc_shift4 (CEBPD_rc)				; oligos_6nt_mkv1_m3 versus MA0836.3_rc (CEBPD_rc); m=6/8; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.498385; ----TTGTGCA ; cor=; Ncor= a 0 0 0 0 359.0 185.0 2276.0 1831.0 292.0 1977.0 20939.0 c 0 0 0 0 404.0 75.0 377.0 2625.0 214.0 17309.0 233.0 g 0 0 0 0 315.0 652.0 17458.0 1022.0 20683.0 299.0 81.0 t 0 0 0 0 20374.0 20540.0 1341.0 15974.0 263.0 1867.0 199.0
MA1994.2_rc_shift0 (Nkx2-1_rc)				; oligos_6nt_mkv1_m3 versus MA1994.2_rc (Nkx2-1_rc); m=7/8; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.431759; TCAAGTG---- ; cor=; Ncor= a 541.0 518.0 15157.0 15106.0 316.0 343.0 886.0 0 0 0 0 c 213.0 14172.0 315.0 605.0 118.0 146.0 181.0 0 0 0 0 g 243.0 657.0 518.0 162.0 15640.0 275.0 14886.0 0 0 0 0 t 15245.0 895.0 252.0 369.0 168.0 15478.0 289.0 0 0 0 0
MA0479.2_rc_shift5 (FOXH1_rc)				; oligos_6nt_mkv1_m3 versus MA0479.2_rc (FOXH1_rc); m=8/8; ncol2=8; w=0; offset=4; strand=R; shift=5; score=0.406626; -----TGTGKA ; cor=; Ncor= a 0 0 0 0 0 1073.0 0.0 0.0 0.0 64.0 8211.0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 8211.0 0.0 6797.0 5773.0 0.0 t 0 0 0 0 0 7138.0 0.0 8211.0 1414.0 2374.0 0.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)				; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -GrAAGGTAAym ; Alignment reference a 0 0 1 2 2 0 0 0 2 2 0 1 c 0 0 0 0 0 0 0 0 0 0 1 1 g 0 2 1 0 0 2 2 0 0 0 0 0 t 0 0 0 0 0 0 0 2 0 0 1 0
MA1112.3_shift2 (NR4A1)				; oligos_7nt_mkv1_m5 versus MA1112.3 (NR4A1); m=1/9; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.560628; --AAAGGTCA-- ; cor=; Ncor= a 0 0 14313.0 15268.0 15684.0 427.0 300.0 365.0 70.0 15126.0 0 0 c 0 0 236.0 117.0 62.0 92.0 166.0 824.0 14949.0 151.0 0 0 g 0 0 823.0 333.0 128.0 12434.0 14964.0 1358.0 151.0 329.0 0 0 t 0 0 555.0 209.0 53.0 2974.0 497.0 13380.0 757.0 321.0 0 0
MA0160.3_shift2 (NR4A2)				; oligos_7nt_mkv1_m5 versus MA0160.3 (NR4A2); m=2/9; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.556688; --AAAGGTCA-- ; cor=; Ncor= a 0 0 209.0 209.0 209.0 0.0 0.0 6.0 0.0 209.0 0 0 c 0 0 0.0 0.0 5.0 0.0 0.0 22.0 209.0 4.0 0 0 g 0 0 28.0 1.0 1.0 160.0 209.0 21.0 1.0 40.0 0 0 t 0 0 22.0 18.0 0.0 49.0 2.0 209.0 14.0 0.0 0 0
MA1111.2_shift3 (NR2F2)				; oligos_7nt_mkv1_m5 versus MA1111.2 (NR2F2); m=3/9; ncol2=7; w=0; offset=2; strand=D; shift=3; score=0.516081; ---AAGGTCA-- ; cor=; Ncor= a 0 0 0 1788.0 2084.0 37.0 33.0 17.0 30.0 2111.0 0 0 c 0 0 0 37.0 15.0 16.0 12.0 22.0 1978.0 16.0 0 0 g 0 0 0 173.0 82.0 2108.0 2132.0 30.0 26.0 43.0 0 0 t 0 0 0 206.0 23.0 43.0 27.0 2135.0 170.0 34.0 0 0
MA2338.1_shift3 (Ppara)				; oligos_7nt_mkv1_m5 versus MA2338.1 (Ppara); m=4/9; ncol2=7; w=0; offset=2; strand=D; shift=3; score=0.507379; ---AAGGTCA-- ; cor=; Ncor= a 0 0 0 16299.0 17009.0 258.0 354.0 259.0 440.0 13045.0 0 0 c 0 0 0 258.0 641.0 446.0 68.0 83.0 16858.0 2036.0 0 0 g 0 0 0 788.0 328.0 17024.0 17412.0 75.0 178.0 1148.0 0 0 t 0 0 0 833.0 200.0 450.0 344.0 17761.0 702.0 1949.0 0 0
MA1121.2_rc_shift1 (TEAD2_rc)				; oligos_7nt_mkv1_m5 versus MA1121.2_rc (TEAD2_rc); m=5/9; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.469218; -GGAATGT---- ; cor=; Ncor= a 0 18.0 24.0 510.0 524.0 9.0 11.0 14.0 0 0 0 0 c 0 3.0 10.0 9.0 6.0 11.0 14.0 70.0 0 0 0 0 g 0 513.0 500.0 8.0 10.0 5.0 478.0 17.0 0 0 0 0 t 0 8.0 8.0 15.0 2.0 517.0 39.0 441.0 0 0 0 0
MA1110.3_shift4 (Nr1H4)				; oligos_7nt_mkv1_m5 versus MA1110.3 (Nr1H4); m=6/9; ncol2=6; w=0; offset=3; strand=D; shift=4; score=0.432997; ----AGGTCA-- ; cor=; Ncor= a 0 0 0 0 4597.0 13.0 31.0 1.0 163.0 4589.0 0 0 c 0 0 0 0 83.0 150.0 4.0 0.0 4351.0 29.0 0 0 g 0 0 0 0 49.0 4542.0 4671.0 0.0 10.0 118.0 0 0 t 0 0 0 0 7.0 31.0 30.0 4735.0 212.0 0.0 0 0
MA1996.2_shift4 (Nr1H2)				; oligos_7nt_mkv1_m5 versus MA1996.2 (Nr1H2); m=7/9; ncol2=6; w=0; offset=3; strand=D; shift=4; score=0.426655; ----AGGTCA-- ; cor=; Ncor= a 0 0 0 0 8549.0 88.0 91.0 61.0 147.0 8642.0 0 0 c 0 0 0 0 191.0 171.0 36.0 35.0 8483.0 51.0 0 0 g 0 0 0 0 132.0 8521.0 8740.0 41.0 72.0 241.0 0 0 t 0 0 0 0 99.0 191.0 104.0 8834.0 269.0 37.0 0 0
MA0809.3_rc_shift0 (TEAD4_rc)				; oligos_7nt_mkv1_m5 versus MA0809.3_rc (TEAD4_rc); m=8/9; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score=0.425944; TGGAATGT---- ; cor=; Ncor= a 11219.0 1494.0 2585.0 72137.0 74967.0 1502.0 1043.0 3144.0 0 0 0 0 c 1191.0 212.0 1580.0 2100.0 1025.0 569.0 3295.0 11265.0 0 0 0 0 g 3874.0 75066.0 72555.0 1176.0 1129.0 1218.0 66205.0 2414.0 0 0 0 0 t 61802.0 1314.0 1366.0 2673.0 965.0 74797.0 7543.0 61263.0 0 0 0 0
MA1717.2_rc_shift0 (ZNF784_rc)				; oligos_7nt_mkv1_m5 versus MA1717.2_rc (ZNF784_rc); m=9/9; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score=0.411604; cGGTArGT---- ; cor=; Ncor= a 1746.0 154.0 124.0 22.0 6529.0 2182.0 69.0 0.0 0 0 0 0 c 4783.0 555.0 10.0 42.0 96.0 77.0 0.0 0.0 0 0 0 0 g 559.0 6529.0 6529.0 35.0 229.0 4347.0 6529.0 6.0 0 0 0 0 t 680.0 135.0 39.0 6529.0 206.0 71.0 26.0 6529.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m2_shift1 (oligos_7nt_mkv1_m2)				; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=11; shift=1; ncol=12; -CyAGTGTGCmm ; Alignment reference a 0 0 0 3 0 0 0 0 0 0 2 1 c 0 3 2 0 0 0 0 0 0 3 1 2 g 0 0 0 0 3 0 3 0 3 0 0 0 t 0 0 1 0 0 3 0 3 0 0 0 0
MA0143.5_rc_shift1 (SOX2_rc)				; oligos_7nt_mkv1_m2 versus MA0143.5_rc (SOX2_rc); m=1/5; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.482431; -cCATTGT---- ; cor=; Ncor= a 0 10304.0 1656.0 79277.0 1185.0 2412.0 4848.0 1385.0 0 0 0 0 c 0 54414.0 73372.0 930.0 2002.0 550.0 1243.0 418.0 0 0 0 0 g 0 6264.0 800.0 732.0 1742.0 1205.0 78356.0 436.0 0 0 0 0 t 0 14772.0 9926.0 4815.0 80825.0 81587.0 1307.0 83515.0 0 0 0 0
MA0514.3_rc_shift1 (Sox3_rc)				; oligos_7nt_mkv1_m2 versus MA0514.3_rc (Sox3_rc); m=2/5; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.480115; -cCATTGT---- ; cor=; Ncor= a 0 973.0 187.0 11151.0 69.0 289.0 525.0 89.0 0 0 0 0 c 0 7664.0 10041.0 104.0 143.0 93.0 178.0 76.0 0 0 0 0 g 0 1582.0 133.0 150.0 143.0 312.0 11125.0 52.0 0 0 0 0 t 0 1759.0 1617.0 573.0 11623.0 11284.0 150.0 11761.0 0 0 0 0
MA1120.2_rc_shift1 (SOX13_rc)				; oligos_7nt_mkv1_m2 versus MA1120.2_rc (SOX13_rc); m=3/5; ncol2=7; w=0; offset=0; strand=R; shift=1; score=0.476649; -cCATTGT---- ; cor=; Ncor= a 0 461.0 73.0 4291.0 51.0 118.0 161.0 39.0 0 0 0 0 c 0 2666.0 3837.0 28.0 63.0 50.0 60.0 40.0 0 0 0 0 g 0 647.0 57.0 77.0 48.0 55.0 4276.0 22.0 0 0 0 0 t 0 778.0 585.0 156.0 4390.0 4329.0 55.0 4451.0 0 0 0 0
MA0738.2_shift6 (HIC2)				; oligos_7nt_mkv1_m2 versus MA0738.2 (HIC2); m=4/5; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.440006; ------rTGCCM ; cor=; Ncor= a 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 c 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 g 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 t 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0
MA1994.2_rc_shift0 (Nkx2-1_rc)				; oligos_7nt_mkv1_m2 versus MA1994.2_rc (Nkx2-1_rc); m=5/5; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.407725; TCAAGTG----- ; cor=; Ncor= a 541.0 518.0 15157.0 15106.0 316.0 343.0 886.0 0 0 0 0 0 c 213.0 14172.0 315.0 605.0 118.0 146.0 181.0 0 0 0 0 0 g 243.0 657.0 518.0 162.0 15640.0 275.0 14886.0 0 0 0 0 0 t 15245.0 895.0 252.0 369.0 168.0 15478.0 289.0 0 0 0 0 0