peak-motifs Astrocytes_MDD_off_on_drugs

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=11.74; evalue=1.8e-12

tvTGACTCAgms

SKCTGAGTCABA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tvTGACTCAgms

Mafg MA0659.4 D 12 1.0000 0.862 0.862 NA NA

Bach1::Mafk MA0591.2 D 12 1.0000 0.861 0.861 NA NA

MAFG::NFE2L1 MA0089.3 D 11 0.9167 0.863 0.791 NA NA

Total matches= 35 (32 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 65 (46.76%)
Max nb of predicted sites per peak: 4
(chr14:35365201-35366712)
Mean nb of predicted sites per peak: 1.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=3.65; evalue=0.00022

cgCCCAGGCys

SRGCCTGGGCG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cgCCCAGGCys

ZNF213 MA2121.1 D 10 0.7692 0.954 0.734 NA NA

Zfp809 MA2125.1 D 9 0.8182 0.726 0.594 NA NA

TFAP2B MA0812.2 D 9 0.8182 0.711 0.582 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 48 (34.53%)
Max nb of predicted sites per peak: 4
(chr17:78358810-78361046)
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=1.99; evalue=0.01

mwAAACAAawm

KWTTTGTTTWK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mwAAACAAawm

FOXD2 MA0847.4 D 11 1.0000 0.755 0.755 NA NA

Foxj3 MA0851.2 D 9 0.8182 0.868 0.710 NA NA

Sox6 MA0515.1 R 10 0.9091 0.762 0.692 NA NA

Total matches= 45 (42 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 51 (36.69%)
Max nb of predicted sites per peak: 7
(chr11:35165783-35168082)
Mean nb of predicted sites per peak: 1.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=1.51; evalue=0.031

ssAGGCTGgr

YCCAGCCTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssAGGCTGgr

FEZF2 MA2341.1 R 8 0.8000 0.939 0.751 NA NA

ZNF213 MA2121.1 D 10 0.8333 0.815 0.679 NA NA

ZNF770 MA2099.1 R 8 0.8000 0.803 0.643 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (20.14%)
Max nb of predicted sites per peak: 2
(chr9:135662502-135663661)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=1.29; evalue=0.051

ccCCTCCChs

SDGGGAGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCTCCChs

ZNF148 MA1653.2 D 10 1.0000 0.858 0.858 NA NA

ZNF281 MA1630.3 R 10 1.0000 0.783 0.783 NA NA

SP4 MA0685.2 R 9 0.9000 0.810 0.729 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 20 (14.39%)
Max nb of predicted sites per peak: 7
(chr8:8227164-8229261)
Mean nb of predicted sites per peak: 1.65

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv4_m1

k-mer sig=5.43; evalue=3.7e-06

rrTGACTCAby

RVTGAGTCAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrTGACTCAby

FOSL2 MA0478.2 D 10 0.9091 0.965 0.877 NA NA

BACH2 MA1101.3 D 11 1.0000 0.876 0.876 NA NA

NFE2 MA0841.2 D 10 0.9091 0.904 0.822 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 69 (49.64%)
Max nb of predicted sites per peak: 3
(chr9:104841454-104842519)
Mean nb of predicted sites per peak: 1.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv4_m2

k-mer sig=1.31; evalue=0.049

awGATGTCAww

WWTGACATCWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awGATGTCAww

JUN MA0488.2 D 10 0.9091 0.863 0.785 NA NA

ATF2 MA1632.2 D 10 0.9091 0.859 0.781 NA NA

FOSB::JUN MA1127.1 R 11 1.0000 0.747 0.747 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 27 (19.42%)
Max nb of predicted sites per peak: 3
(chr3:183285380-183286452)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv4_m3

k-mer sig=0.14; evalue=0.72

csCCCTCCCys

SRGGGAGGGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csCCCTCCCys

PATZ1 MA1961.2 R 11 1.0000 0.857 0.857 NA NA

ZNF148 MA1653.2 D 10 0.9091 0.916 0.832 NA NA

KLF5 MA0599.1 D 10 0.9091 0.847 0.770 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 43 (30.94%)
Max nb of predicted sites per peak: 13
(chr17:78358810-78361046)
Mean nb of predicted sites per peak: 1.77

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv4_m4

k-mer sig=0.06; evalue=0.87

cyCCTCTCCyy

RRGGAGAGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyCCTCTCCyy

ZNF148 MA1653.2 D 10 0.9091 0.719 0.653 NA NA

KLF5 MA0599.1 D 10 0.9091 0.702 0.638 NA NA

ZNF530 MA1981.2 R 11 0.7857 0.769 0.604 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 43 (30.94%)
Max nb of predicted sites per peak: 4
(chr8:141415636-141416175)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv4_m5

k-mer sig=0.05; evalue=0.89

ssCGGGCGCcs

SGGCGCCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGGGCGCcs

Zfp961 MA2126.1 D 8 0.7273 0.865 0.629 NA NA

ZNF417 MA1727.2 D 7 0.6364 0.838 0.534 NA NA

KLF7 MA1959.2 D 8 0.7273 0.729 0.530 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 21 (15.11%)
Max nb of predicted sites per peak: 38
(chr17:78358810-78361046)
Mean nb of predicted sites per peak: 3.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Astrocytes_MDD_off_on_drugs_up (16/05/2025 18:41)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results