peak-motifs Exc_L4-5_RORB_IL1RAPL2_MDD_off_on_drugs

Motif discovery

Motif 1 oligos_6nt_mkv2_m1

k-mer sig=11.74; evalue=1.8e-12

sssGGGCGGGGCgss

SSCGCCCCGCCCSSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sssGGGCGGGGCgss

PATZ1 MA1961.2 D 11 0.7333 0.889 0.652 NA NA

ZBED4 MA2328.1 R 10 0.6667 0.944 0.629 NA NA

SP3 MA0746.3 R 11 0.7333 0.812 0.595 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 17 (21.79%)
Max nb of predicted sites per peak: 20
(chr16:28062087-28064011)
Mean nb of predicted sites per peak: 6.47

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv2_m2

k-mer sig=4.03; evalue=9.3e-05

ycTCCCCArm

KYTGGGGAGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ycTCCCCArm

MZF1 MA0056.3 D 8 0.8000 0.866 0.693 NA NA

RELB MA1117.2 D 7 0.7000 0.828 0.580 NA NA

KLF4 MA0039.5 D 7 0.6364 0.841 0.535 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 19 (24.36%)
Max nb of predicted sites per peak: 3
(chr17:36188032-36189241)
Mean nb of predicted sites per peak: 1.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv2_m3

k-mer sig=3.95; evalue=0.00011

cycCCTCCCva

TBGGGAGGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cycCCTCCCva

PATZ1 MA1961.2 R 11 1.0000 0.809 0.809 NA NA

ZNF148 MA1653.2 D 10 0.9091 0.887 0.806 NA NA

ZNF281 MA1630.3 R 10 0.9091 0.811 0.737 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (17.95%)
Max nb of predicted sites per peak: 4
(chr8:8227164-8229261)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv2_m4

k-mer sig=2.57; evalue=0.0027

tsAGGAAGrr

YYCTTCCTSA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tsAGGAAGrr

Erg MA0474.4 D 10 1.0000 0.880 0.880 NA NA

GABPA MA0062.4 R 10 1.0000 0.875 0.875 NA NA

ELF3 MA0640.3 R 9 0.9000 0.917 0.825 NA NA

Total matches= 46 (43 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 27 (34.62%)
Max nb of predicted sites per peak: 3
(chr17:36188032-36189241)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv2_m5

k-mer sig=2.49; evalue=0.0032

ycCCCACCccs

SGGGGTGGGGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ycCCCACCccs

PATZ1 MA1961.2 R 11 1.0000 0.824 0.824 NA NA

KLF5 MA0599.1 D 10 0.9091 0.834 0.758 NA NA

KLF9 MA1107.3 D 11 1.0000 0.700 0.700 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 21 (26.92%)
Max nb of predicted sites per peak: 5
(chr7:2528840-2532037)
Mean nb of predicted sites per peak: 1.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv2_m1

k-mer sig=10.09; evalue=8.1e-11

csccGCCCCGCCCscss

SSGSGGGCGGGGCGGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csccGCCCCGCCCscss

PATZ1 MA1961.2 R 11 0.6471 0.888 0.575 NA NA

ZBED4 MA2328.1 D 10 0.5882 0.952 0.560 NA NA

SP3 MA0746.3 D 11 0.6471 0.813 0.526 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 17 (21.79%)
Max nb of predicted sites per peak: 23
(chr16:28062087-28064011)
Mean nb of predicted sites per peak: 7.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv2_m2

k-mer sig=2.80; evalue=0.0016

sbCCCCACCCcms

SKGGGGTGGGGVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sbCCCCACCCcms

PATZ1 MA1961.2 R 11 0.8462 0.903 0.764 NA NA

KLF5 MA0599.1 D 10 0.7692 0.920 0.708 NA NA

ZNF281 MA1630.3 R 10 0.7692 0.850 0.654 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 25 (32.05%)
Max nb of predicted sites per peak: 5
(chr8:8227164-8229261)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv2_m3

k-mer sig=10.09; evalue=8.1e-11

sscGGGGCGGGGCcsg

CSGGCCCCGCCCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sscGGGGCGGGGCcsg

PATZ1 MA1961.2 D 11 0.6875 0.895 0.615 NA NA

ZBED4 MA2328.1 R 10 0.6250 0.904 0.565 NA NA

KLF5 MA0599.1 R 10 0.6250 0.892 0.557 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 19 (24.36%)
Max nb of predicted sites per peak: 16
(chr16:28062087-28064011)
Mean nb of predicted sites per peak: 5.47

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv2_m4

k-mer sig=2.07; evalue=0.0085

ssGCGCGCGCss

SSGCGCGCGCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssGCGCGCGCss

TCFL5 MA0632.3 D 8 0.6667 0.814 0.543 NA NA

HES1 MA1099.3 R 8 0.6667 0.731 0.487 NA NA

ZBTB14 MA1650.2 D 8 0.6667 0.706 0.471 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (11.54%)
Max nb of predicted sites per peak: 30
(chr16:28062087-28064011)
Mean nb of predicted sites per peak: 9.89

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv2_m5

k-mer sig=1.79; evalue=0.016

scsCCGCCGCCss

SSGGCGGCGGSGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scsCCGCCGCCss

ZNF93 MA1721.2 R 13 0.9286 0.720 0.668 NA NA

PATZ1 MA1961.2 R 11 0.8462 0.750 0.635 NA NA

ZNF610 MA1713.2 D 10 0.7692 0.723 0.556 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 16 (20.51%)
Max nb of predicted sites per peak: 25
(chr16:28062087-28064011)
Mean nb of predicted sites per peak: 4.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Exc_L4-5_RORB_IL1RAPL2_MDD_off_on_drugs_up (16/05/2025 18:43)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results