; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	5	3	1	1	0	2	0	0	0	0	10	9
c	8	7	4	38	4	1	1	2	35	34	6	7
g	23	22	32	0	35	35	38	35	1	3	14	19
t	3	7	2	0	0	1	0	2	3	2	9	4
//
; Sites	39
>site_0
GGGCGGGGCCGA
>site_1
GGGAGGGGCCGG
>site_2
AGGCGGGCCCTG
>site_3
AGGCGGGGCCGA
>site_4
AGGCGGGGCCGG
>site_5
GGGCGGGGCTAA
>site_6
GGGCGGGGTCAG
>site_7
TGGCGGGTCCTG
>site_8
GGGCGAGGCCTG
>site_9
GGGCGGGGCCTG
>site_10
GGGCGGGGCCAA
>site_11
GGGCGGGGCCTG
>site_12
GCGCGGGGGCAG
>site_13
GAGCGGGCCCAG
>site_14
GGGCGGGGCCGC
>site_15
CCGCGGGGCCGC
>site_16
GGCCGGGGCCGG
>site_17
GGTCGGGGCCGG
>site_18
GCGCGGCGCCCG
>site_19
CTGCGGGGCCCT
>site_20
GCCCGGGGCCCC
>site_21
CCGCCGGGCCGG
>site_22
GGGCCGGGCCGC
>site_23
CGGCGGGGTCCA
>site_24
CGGCCGGGCCTT
>site_25
CGGCCGGGCCGG
>site_26
TTGCGAGGCCAA
>site_27
GTGCGCGGCCTA
>site_28
TCGCGGGGCTTG
>site_29
GGTCGGGGTCGT
>site_30
GGGCGGGGCGAA
>site_31
GAGCGGGGCGGG
>site_32
GTGCGGGGCCCT
>site_33
GGGCGGGTCCTG
>site_34
GCCCGGGGCCAC
>site_35
CAACGGGGCCAG
>site_36
CTGCGTGGCCCA
>site_37
ATGCGGGGCGGC
>site_38
ATCCGGGGCCAC
a	3	1	1	0	1	0	1	0	0	8	4
c	7	4	19	19	0	21	19	21	0	3	8
g	5	9	1	2	0	0	0	0	21	8	7
t	6	7	0	0	20	0	1	0	0	2	2
//
; Sites	21
>site_0
CGCCTCCCGAA
>site_1
TCCCTCCCGAC
>site_2
CGCCTCCCGGA
>site_3
TGCGTCCCGGG
>site_4
GCCCTCACGGA
>site_5
GGCCTCCCGGG
>site_6
CTCCTCCCGGA
>site_7
AGCCTCCCGAG
>site_8
AGCCTCCCGAG
>site_9
AGCCTCCCGAG
>site_10
TTCGTCCCGGC
>site_11
TTCCTCTCGGG
>site_12
TTCCTCCCGCC
>site_13
CTCCTCCCGCC
>site_14
TGCCTCCCGAT
>site_15
GCCCTCCCGTC
>site_16
CTGCTCCCGTC
>site_17
GTCCACCCGAC
>site_18
CCCCTCCCGCT
>site_19
CGCCTCCCGGG
>site_20
GAACTCCCGAC
a	6	8	0	1	0	0	21	20	1	5	3
c	7	3	22	1	2	0	0	0	19	4	11
g	9	3	0	0	3	21	0	2	0	3	1
t	0	8	0	20	17	1	1	0	2	10	7
//
; Sites	22
>site_0
AACTTGAGCCA
>site_1
CACTTGAACCC
>site_2
GTCTCGAACTC
>site_3
AGCTTGAATTA
>site_4
CACTTGAGCTC
>site_5
GTCTTGAACAC
>site_6
GTCTCGAACTC
>site_7
CGCTTGAACCT
>site_8
GTCTTGAACTC
>site_9
CACTTGAACCT
>site_10
CACTGGAACTT
>site_11
GTCTTGAACTC
>site_12
GTCTGGAACAT
>site_13
AGCATGAACGT
>site_14
ACCTTGAAAAC
>site_15
ATCTTTAACAA
>site_16
CACTTGAACAC
>site_17
CCCTTGTACTG
>site_18
GACTGGAACGT
>site_19
ACCCTGAACTC
>site_20
GTCTTGAACTC
>site_21
GACTTGAATGT
a	2	0	0	11	0	0	11	0	11	1	1	1
c	0	3	0	0	1	1	0	10	0	0	2	6
g	8	8	12	1	0	0	1	0	0	11	8	2
t	2	1	0	0	11	11	0	2	1	0	1	3
//
; Sites	12
>site_0
ACGATTGCAGTT
>site_1
GGGATTACAGGC
>site_2
GGGATTACAGGG
>site_3
GCGATTACAGGT
>site_4
GGGATTACAGGC
>site_5
GGGACTACAGGC
>site_6
GGGATTATAGGT
>site_7
GGGATTATAGGC
>site_8
TTGATCACAGCC
>site_9
GGGATTACAGGC
>site_10
AGGATTACTGAG
>site_11
TCGGTTACAACA
a	2	1	0	0	9	0	0	8	11	7	6	5
c	5	2	11	1	0	10	0	3	0	0	1	1
g	1	3	0	0	1	1	0	0	0	3	1	4
t	3	5	0	10	1	0	11	0	0	1	3	1
//
; Sites	11
>site_0
CTCTACTAAAAA
>site_1
GCCTTCTAAATG
>site_2
CACTACTAAAAA
>site_3
TGCTAGTAAGTG
>site_4
CTCTACTAAAAA
>site_5
AGCTACTCAGCG
>site_6
TTCTGCTAAAAT
>site_7
CTCTACTAAAAA
>site_8
CCCTACTCAGTA
>site_9
TGCTACTCATAG
>site_10
ATCCACTAAAGC
; Host name	rsat
; Job started	2025-05-16.184100
; Job done	2025-05-16.184100
; Seconds	0.13
;	user	0.13
;	system	0.01
;	cuser	0
;	csystem	0
