/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
		file1	1	10	32
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m2 MA0516.3 oligos_6nt_mkv2_m2 SP2 0.945 0.851 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv2_m2 MA0599.1 oligos_6nt_mkv2_m2 KLF5 0.829 0.829 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 MA0742.2 oligos_6nt_mkv2_m2 KLF12 0.892 0.803 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv2_m2 MA0740.2 oligos_6nt_mkv2_m2 KLF14 0.884 0.795 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv2_m2 MA1511.2 oligos_6nt_mkv2_m2 KLF10 0.870 0.783 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv2_m2 MA1961.2 oligos_6nt_mkv2_m2 PATZ1 0.860 0.782 10 11 10 11 0.9091 1.0000 0.9091 R 0
oligos_6nt_mkv2_m2 MA0685.2 oligos_6nt_mkv2_m2 SP4 0.853 0.767 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv2_m2 MA0079.5 oligos_6nt_mkv2_m2 SP1 0.849 0.764 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv2_m2 MA1513.2 oligos_6nt_mkv2_m2 KLF15 0.952 0.761 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv2_m2 MA0865.3 oligos_6nt_mkv2_m2 E2F8 0.826 0.744 10 9 9 10 0.9000 0.9000 1.0000 D 0
oligos_6nt_mkv2_m2 MA0741.1 oligos_6nt_mkv2_m2 KLF16 0.779 0.708 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6nt_mkv2_m2 MA0746.3 oligos_6nt_mkv2_m2 SP3 0.776 0.705 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6nt_mkv2_m2 MA0471.3 oligos_6nt_mkv2_m2 E2F6 0.862 0.689 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv2_m2 MA1959.2 oligos_6nt_mkv2_m2 KLF7 0.851 0.681 10 8 8 10 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv2_m2 MA1564.2 oligos_6nt_mkv2_m2 SP9 0.821 0.672 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m2 MA0493.3 oligos_6nt_mkv2_m2 KLF1 0.832 0.666 10 8 8 10 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv2_m2 MA1122.2 oligos_6nt_mkv2_m2 TFDP1 0.813 0.650 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv2_m2 MA1517.2 oligos_6nt_mkv2_m2 KLF6 0.721 0.649 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv2_m2 MA1515.2 oligos_6nt_mkv2_m2 KLF2 0.800 0.640 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv2_m2 MA1630.3 oligos_6nt_mkv2_m2 ZNF281 0.754 0.617 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6nt_mkv2_m2 MA1653.2 oligos_6nt_mkv2_m2 ZNF148 0.746 0.610 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m2 MA1512.2 oligos_6nt_mkv2_m2 KLF11 0.746 0.610 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m2 MA1516.2 oligos_6nt_mkv2_m2 KLF3 0.742 0.607 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv2_m2 MA0039.5 oligos_6nt_mkv2_m2 KLF4 0.750 0.600 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv2_m2 MA0748.3 oligos_6nt_mkv2_m2 YY2 0.849 0.594 10 7 7 10 0.7000 0.7000 1.0000 R 3
oligos_6nt_mkv2_m2 MA1522.2 oligos_6nt_mkv2_m2 MAZ 0.739 0.591 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv2_m2 MA2328.1 oligos_6nt_mkv2_m2 ZBED4 0.849 0.566 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m2 MA2341.1 oligos_6nt_mkv2_m2 FEZF2 0.704 0.563 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv2_m2 MA0747.2 oligos_6nt_mkv2_m2 SP8 0.727 0.545 10 11 9 12 0.7500 0.9000 0.8182 D 1
oligos_6nt_mkv2_m2 MA0758.1 oligos_6nt_mkv2_m2 E2F7 0.711 0.508 10 14 10 14 0.7143 1.0000 0.7143 D -2
oligos_6nt_mkv2_m2 MA0753.3 oligos_6nt_mkv2_m2 ZNF740 0.719 0.480 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m2 MA1578.2 oligos_6nt_mkv2_m2 VEZF1 0.758 0.455 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv2_m2 MA1965.2 oligos_6nt_mkv2_m2 SP5 0.708 0.425 10 6 6 10 0.6000 0.6000 1.0000 D 3
oligos_6nt_mkv2_m2 MA0657.2 oligos_6nt_mkv2_m2 KLF13 0.716 0.421 10 17 10 17 0.5882 1.0000 0.5882 D -1
oligos_6nt_mkv2_m2 MA0162.5 oligos_6nt_mkv2_m2 EGR1 0.752 0.405 10 10 7 13 0.5385 0.7000 0.7000 D 3 
 Host name	rsat
 Job started	2025-05-16.184116
 Job done	2025-05-16.184128
 Seconds	1.64
	user	1.64
	system	0.47
	cuser	9.12
;	csystem	0.94