compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab prefix $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant match_table_txt $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab html_index $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html match_table_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf file1 1 11 21 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv2_m2 | MA1653.2 | oligos_7nt_mkv2_m2 | ZNF148 | 0.714 | 0.649 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m2 | MA1596.1 | oligos_7nt_mkv2_m2 | ZNF460 | 0.886 | 0.609 | 11 | 16 | 11 | 16 | 0.6875 | 1.0000 | 0.6875 | D | -5 |
| oligos_7nt_mkv2_m2 | MA1522.2 | oligos_7nt_mkv2_m2 | MAZ | 0.822 | 0.598 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m2 | MA0528.3 | oligos_7nt_mkv2_m2 | ZNF263 | 0.933 | 0.594 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | R | 1 |
| oligos_7nt_mkv2_m2 | MA1965.2 | oligos_7nt_mkv2_m2 | SP5 | 0.997 | 0.544 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 2 |
| oligos_7nt_mkv2_m2 | MA1122.2 | oligos_7nt_mkv2_m2 | TFDP1 | 0.731 | 0.532 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 3 |
| oligos_7nt_mkv2_m2 | MA0493.3 | oligos_7nt_mkv2_m2 | KLF1 | 0.710 | 0.517 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 0 |
| oligos_7nt_mkv2_m2 | MA1959.2 | oligos_7nt_mkv2_m2 | KLF7 | 0.706 | 0.513 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 0 |
| oligos_7nt_mkv2_m2 | MA0471.3 | oligos_7nt_mkv2_m2 | E2F6 | 0.703 | 0.511 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 3 |
| oligos_7nt_mkv2_m2 | MA1587.1 | oligos_7nt_mkv2_m2 | ZNF135 | 0.732 | 0.488 | 11 | 14 | 10 | 15 | 0.6667 | 0.9091 | 0.7143 | D | -4 |
| oligos_7nt_mkv2_m2 | MA0865.3 | oligos_7nt_mkv2_m2 | E2F8 | 0.723 | 0.482 | 11 | 9 | 8 | 12 | 0.6667 | 0.7273 | 0.8889 | D | 3 |
| oligos_7nt_mkv2_m2 | MA2099.1 | oligos_7nt_mkv2_m2 | ZNF770 | 0.789 | 0.461 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | -1 |
| oligos_7nt_mkv2_m2 | MA1578.2 | oligos_7nt_mkv2_m2 | VEZF1 | 0.755 | 0.412 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 2 |
| oligos_7nt_mkv2_m2 | MA1714.2 | oligos_7nt_mkv2_m2 | ZNF675 | 0.709 | 0.410 | 11 | 19 | 11 | 19 | 0.5789 | 1.0000 | 0.5789 | R | -6 |
| oligos_7nt_mkv2_m2 | MA1652.2 | oligos_7nt_mkv2_m2 | ZKSCAN5 | 0.743 | 0.400 | 11 | 9 | 7 | 13 | 0.5385 | 0.6364 | 0.7778 | R | -2 |
Host name rsat Job started 2025-05-16.184140 Job done 2025-05-16.184147 Seconds 1.31 user 1.31 system 0.34 cuser 5.27 ; csystem 0.48