One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift6 ; 16 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift6 (oligos_7nt_mkv2_m2)    
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=11; shift=6; ncol=17; ------ykCCTCCCGrs
; Alignment reference
a	0	0	0	0	0	0	3	1	1	0	1	0	1	0	0	8	4
c	0	0	0	0	0	0	7	4	19	19	0	21	19	21	0	3	8
g	0	0	0	0	0	0	5	9	1	2	0	0	0	0	21	8	7
t	0	0	0	0	0	0	6	7	0	0	20	0	1	0	0	2	2
MA1653.2_shift6 (ZNF148)
; oligos_7nt_mkv2_m2 versus MA1653.2 (ZNF148); m=1/15; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.648718; ------CCCCTCCCcc-
; cor=; Ncor=
a	0	0	0	0	0	0	82.0	132.0	136.0	89.0	133.0	66.0	352.0	442.0	846.0	841.0	0
c	0	0	0	0	0	0	10799.0	10396.0	10526.0	10833.0	14.0	10954.0	9922.0	9283.0	7239.0	7114.0	0
g	0	0	0	0	0	0	205.0	471.0	401.0	211.0	1012.0	112.0	460.0	392.0	1924.0	2064.0	0
t	0	0	0	0	0	0	113.0	200.0	136.0	66.0	10040.0	67.0	465.0	1082.0	1190.0	1180.0	0
MA1596.1_shift1 (ZNF460)
; oligos_7nt_mkv2_m2 versus MA1596.1 (ZNF460); m=2/15; ncol2=16; w=-5; offset=-5; strand=D; shift=1; score=0.609225; -rCCTCmGCCTCCCrrG
; cor=; Ncor=
a	0	412.0	49.0	19.0	27.0	17.0	851.0	61.0	6.0	1.0	13.0	3.0	5.0	12.0	516.0	987.0	243.0
c	0	131.0	1264.0	1460.0	218.0	1519.0	495.0	23.0	1588.0	1596.0	12.0	1584.0	1583.0	1533.0	110.0	175.0	158.0
g	0	1023.0	185.0	67.0	83.0	47.0	181.0	1493.0	7.0	9.0	17.0	15.0	15.0	27.0	930.0	421.0	1147.0
t	0	46.0	114.0	66.0	1284.0	29.0	85.0	35.0	11.0	6.0	1570.0	10.0	9.0	40.0	56.0	29.0	64.0
MA1522.2_shift6 (MAZ)
; oligos_7nt_mkv2_m2 versus MA1522.2 (MAZ); m=3/15; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.598154; ------CCCCTCCc---
; cor=; Ncor=
a	0	0	0	0	0	0	17.0	49.0	36.0	39.0	6.0	90.0	23.0	1109.0	0	0	0
c	0	0	0	0	0	0	14945.0	14630.0	14731.0	14676.0	0.0	14961.0	14944.0	9372.0	0	0	0
g	0	0	0	0	0	0	75.0	384.0	290.0	347.0	130.0	8.0	96.0	1768.0	0	0	0
t	0	0	0	0	0	0	26.0	0.0	6.0	1.0	14927.0	4.0	0.0	2814.0	0	0	0
MA0528.3_rc_shift7 (ZNF263_rc)
; oligos_7nt_mkv2_m2 versus MA0528.3_rc (ZNF263_rc); m=4/15; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.593763; -------TCCTCCC---
; cor=; Ncor=
a	0	0	0	0	0	0	0	638.0	717.0	1672.0	620.0	986.0	1192.0	1270.0	0	0	0
c	0	0	0	0	0	0	0	1448.0	52741.0	52875.0	163.0	53435.0	52818.0	51804.0	0	0	0
g	0	0	0	0	0	0	0	1758.0	2190.0	966.0	1660.0	972.0	1544.0	1659.0	0	0	0
t	0	0	0	0	0	0	0	52499.0	695.0	830.0	53900.0	950.0	789.0	1610.0	0	0	0
MA1965.2_shift8 (SP5)
; oligos_7nt_mkv2_m2 versus MA1965.2 (SP5); m=5/15; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.54387; --------CCTCCC---
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	6.0	7.0	0.0	47.0	11.0	0.0	0	0	0
c	0	0	0	0	0	0	0	0	20683.0	20286.0	0.0	20649.0	20451.0	20604.0	0	0	0
g	0	0	0	0	0	0	0	0	3.0	403.0	231.0	0.0	234.0	92.0	0	0	0
t	0	0	0	0	0	0	0	0	4.0	0.0	20465.0	0.0	0.0	0.0	0	0	0
MA1122.2_rc_shift9 (TFDP1_rc)
; oligos_7nt_mkv2_m2 versus MA1122.2_rc (TFDP1_rc); m=6/15; ncol2=8; w=0; offset=3; strand=R; shift=9; score=0.531972; ---------TTCCCGCs
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	55.0	30.0	29.0	26.0	7.0	71.0	26.0	120.0
c	0	0	0	0	0	0	0	0	0	137.0	98.0	1919.0	1865.0	1932.0	22.0	1862.0	940.0
g	0	0	0	0	0	0	0	0	0	170.0	24.0	32.0	80.0	54.0	1886.0	71.0	684.0
t	0	0	0	0	0	0	0	0	0	1645.0	1855.0	27.0	36.0	14.0	28.0	48.0	263.0
MA0493.3_rc_shift6 (KLF1_rc)
; oligos_7nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=7/15; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.516507; ------CCmCrCCC---
; cor=; Ncor=
a	0	0	0	0	0	0	1.0	21.0	324.0	1.0	346.0	1.0	1.0	1.0	0	0	0
c	0	0	0	0	0	0	998.0	896.0	675.0	998.0	1.0	998.0	998.0	998.0	0	0	0
g	0	0	0	0	0	0	1.0	1.0	1.0	1.0	529.0	1.0	1.0	1.0	0	0	0
t	0	0	0	0	0	0	1.0	82.0	1.0	1.0	125.0	1.0	1.0	1.0	0	0	0
MA1959.2_rc_shift6 (KLF7_rc)
; oligos_7nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=8/15; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.513414; ------CcMCGCCC---
; cor=; Ncor=
a	0	0	0	0	0	0	1.0	167.0	254.0	1.0	167.0	1.0	1.0	1.0	0	0	0
c	0	0	0	0	0	0	997.0	642.0	720.0	997.0	1.0	997.0	997.0	997.0	0	0	0
g	0	0	0	0	0	0	1.0	42.0	25.0	1.0	788.0	1.0	1.0	1.0	0	0	0
t	0	0	0	0	0	0	1.0	150.0	1.0	1.0	45.0	1.0	1.0	1.0	0	0	0
MA0471.3_rc_shift9 (E2F6_rc)
; oligos_7nt_mkv2_m2 versus MA0471.3_rc (E2F6_rc); m=9/15; ncol2=8; w=0; offset=3; strand=R; shift=9; score=0.511072; ---------TTCCCGCC
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	757.0	268.0	296.0	353.0	813.0	2125.0	205.0	453.0
c	0	0	0	0	0	0	0	0	0	5021.0	2322.0	31614.0	31973.0	30573.0	693.0	31790.0	29387.0
g	0	0	0	0	0	0	0	0	0	1595.0	1171.0	834.0	434.0	539.0	26424.0	837.0	1148.0
t	0	0	0	0	0	0	0	0	0	25725.0	29337.0	354.0	338.0	1173.0	3856.0	266.0	2110.0
MA1587.1_shift2 (ZNF135)
; oligos_7nt_mkv2_m2 versus MA1587.1 (ZNF135); m=10/15; ncol2=14; w=-4; offset=-4; strand=D; shift=2; score=0.488082; --cCTCGACCTCCyrr-
; cor=; Ncor=
a	0	0	49.0	16.0	4.0	7.0	60.0	886.0	17.0	1.0	1.0	3.0	36.0	55.0	303.0	449.0	0
c	0	0	595.0	858.0	37.0	772.0	25.0	3.0	896.0	939.0	6.0	936.0	800.0	399.0	66.0	35.0	0
g	0	0	122.0	22.0	15.0	10.0	862.0	52.0	26.0	2.0	2.0	6.0	7.0	48.0	523.0	421.0	0
t	0	0	182.0	52.0	892.0	159.0	1.0	7.0	9.0	6.0	939.0	3.0	105.0	446.0	56.0	43.0	0
MA0865.3_shift9 (E2F8)
; oligos_7nt_mkv2_m2 versus MA0865.3 (E2F8); m=11/15; ncol2=9; w=0; offset=3; strand=D; shift=9; score=0.482156; ---------tTCCCGCc
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	155.0	405.0	78.0	12.0	44.0	39.0	1.0	104.0
c	0	0	0	0	0	0	0	0	0	321.0	237.0	1566.0	1566.0	1566.0	7.0	1566.0	1566.0
g	0	0	0	0	0	0	0	0	0	78.0	96.0	170.0	374.0	6.0	1566.0	26.0	537.0
t	0	0	0	0	0	0	0	0	0	1012.0	1566.0	16.0	0.0	13.0	13.0	15.0	274.0
MA2099.1_shift5 (ZNF770)
; oligos_7nt_mkv2_m2 versus MA2099.1 (ZNF770); m=12/15; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.460515; -----CrGCCTCm----
; cor=; Ncor=
a	0	0	0	0	0	292.0	3968.0	179.0	101.0	37.0	87.0	35.0	9257.0	0	0	0	0
c	0	0	0	0	0	12613.0	857.0	79.0	13393.0	14096.0	140.0	14154.0	3865.0	0	0	0	0
g	0	0	0	0	0	374.0	9119.0	13947.0	681.0	133.0	215.0	86.0	485.0	0	0	0	0
t	0	0	0	0	0	1052.0	387.0	126.0	156.0	65.0	13889.0	56.0	724.0	0	0	0	0
MA1578.2_shift8 (VEZF1)
; oligos_7nt_mkv2_m2 versus MA1578.2 (VEZF1); m=13/15; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.411801; --------CCCCCC---
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	71.0	1.0	4.0	2.0	6.0	10.0	0	0	0
c	0	0	0	0	0	0	0	0	790.0	997.0	995.0	997.0	989.0	977.0	0	0	0
g	0	0	0	0	0	0	0	0	137.0	0.0	0.0	0.0	0.0	3.0	0	0	0
t	0	0	0	0	0	0	0	0	0.0	0.0	0.0	0.0	4.0	8.0	0	0	0
MA1714.2_rc_shift0 (ZNF675_rc)
; oligos_7nt_mkv2_m2 versus MA1714.2_rc (ZNF675_rc); m=14/15; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.410324; CATTtTgkCCTCytrrk
; cor=; Ncor=
a	21.0	699.0	1.0	1.0	44.0	103.0	199.0	28.0	108.0	115.0	51.0	14.0	21.0	140.0	428.0	320.0	101.0
c	937.0	46.0	3.0	3.0	172.0	33.0	35.0	78.0	857.0	843.0	233.0	934.0	647.0	174.0	94.0	133.0	247.0
g	5.0	224.0	5.0	3.0	108.0	83.0	656.0	304.0	5.0	7.0	21.0	10.0	19.0	245.0	338.0	361.0	261.0
t	37.0	30.0	991.0	994.0	676.0	781.0	110.0	590.0	30.0	35.0	695.0	42.0	313.0	441.0	140.0	186.0	391.0
MA1652.2_rc_shift4 (ZKSCAN5_rc)
; oligos_7nt_mkv2_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=15/15; ncol2=9; w=-2; offset=-2; strand=R; shift=4; score=0.400055; ----cTCACyTCC----
; cor=; Ncor=
a	0	0	0	0	548.0	25.0	9.0	3092.0	49.0	27.0	19.0	26.0	50.0	0	0	0	0
c	0	0	0	0	2034.0	62.0	3251.0	76.0	3149.0	1827.0	47.0	3236.0	3111.0	0	0	0	0
g	0	0	0	0	370.0	41.0	24.0	86.0	37.0	27.0	62.0	27.0	30.0	0	0	0	0
t	0	0	0	0	375.0	3199.0	43.0	73.0	92.0	1446.0	3199.0	38.0	136.0	0	0	0	0