One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5) |
 |
|
|
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; ykCTACTMArwr
; Alignment reference
a 2 1 0 0 9 0 0 8 11 7 6 5
c 5 2 11 1 0 10 0 3 0 0 1 1
g 1 3 0 0 1 1 0 0 0 3 1 4
t 3 5 0 10 1 0 11 0 0 1 3 1
|
| MA1645.2_shift2 (NKX2-2) |
 |
|
|
; oligos_7nt_mkv2_m5 versus MA1645.2 (NKX2-2); m=1/2; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.467383; --CCACTCAA--
; cor=; Ncor=
a 0 0 2438.0 618.0 23748.0 478.0 490.0 397.0 21326.0 20003.0 0 0
c 0 0 20232.0 24341.0 463.0 24693.0 452.0 24058.0 2772.0 2104.0 0 0
g 0 0 2293.0 176.0 257.0 420.0 295.0 838.0 580.0 2266.0 0 0
t 0 0 1060.0 888.0 1555.0 432.0 24786.0 730.0 1345.0 1650.0 0 0
|
| MA1963.2_shift2 (SATB1) |
 |
|
|
; oligos_7nt_mkv2_m5 versus MA1963.2 (SATB1); m=2/2; ncol2=7; w=0; offset=2; strand=D; shift=2; score=0.457639; --CTAATAA---
; cor=; Ncor=
a 0 0 262.0 492.0 33670.0 32708.0 288.0 32009.0 30660.0 0 0 0
c 0 0 33122.0 195.0 164.0 115.0 128.0 485.0 881.0 0 0 0
g 0 0 140.0 37.0 221.0 120.0 123.0 889.0 1071.0 0 0 0
t 0 0 700.0 33500.0 169.0 1281.0 33685.0 841.0 1612.0 0 0 0
|