One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184046_2025-05-16.184046_ZEi16E/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift2 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift2 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=10; shift=2; ncol=12; --gsCCCGCChy ; Alignment reference a 0 0 6 4 0 0 0 0 0 0 8 3 c 0 0 5 12 32 32 32 0 32 31 14 14 g 0 0 14 10 0 0 0 32 0 1 2 3 t 0 0 7 6 0 0 0 0 0 0 8 12

MA0516.3_rc_shift3 (SP2_rc)
; oligos_6nt_mkv2_m2 versus MA0516.3_rc (SP2_rc); m=1/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.850553; ---cCCCGCCCC ; cor=; Ncor= a 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 c 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 g 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 t 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226

MA0599.1_shift2 (KLF5)
; oligos_6nt_mkv2_m2 versus MA0599.1 (KLF5); m=2/35; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.828583; --gCCMCrCCCh ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0

MA0742.2_rc_shift3 (KLF12_rc)
; oligos_6nt_mkv2_m2 versus MA0742.2_rc (KLF12_rc); m=3/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.802794; ---CCCCGCCCC ; cor=; Ncor= a 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948

MA0740.2_rc_shift3 (KLF14_rc)
; oligos_6nt_mkv2_m2 versus MA0740.2_rc (KLF14_rc); m=4/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.795472; ---CCMCGCCCm ; cor=; Ncor= a 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158

MA1511.2_rc_shift3 (KLF10_rc)
; oligos_6nt_mkv2_m2 versus MA1511.2_rc (KLF10_rc); m=5/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.782973; ---CCMCGCCCC ; cor=; Ncor= a 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427

MA1961.2_rc_shift2 (PATZ1_rc)
; oligos_6nt_mkv2_m2 versus MA1961.2_rc (PATZ1_rc); m=6/35; ncol2=11; w=0; offset=0; strand=R; shift=2; score=0.781741; --sCCCCkCCCC ; cor=; Ncor= a 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0

MA0685.2_rc_shift3 (SP4_rc)
; oligos_6nt_mkv2_m2 versus MA0685.2_rc (SP4_rc); m=7/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.767361; ---CyCCKCCCc ; cor=; Ncor= a 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 c 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 g 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 t 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038

MA0079.5_rc_shift3 (SP1_rc)
; oligos_6nt_mkv2_m2 versus MA0079.5_rc (SP1_rc); m=8/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.763754; ---CyCCKCCCC ; cor=; Ncor= a 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 c 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 g 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 t 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485

MA1513.2_shift3 (KLF15)
; oligos_6nt_mkv2_m2 versus MA1513.2 (KLF15); m=9/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.761312; ---cCCCGCCC- ; cor=; Ncor= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0

MA0865.3_shift2 (E2F8)
; oligos_6nt_mkv2_m2 versus MA0865.3 (E2F8); m=10/35; ncol2=9; w=0; offset=0; strand=D; shift=2; score=0.743761; --tTCCCGCcA- ; cor=; Ncor= a 0 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 c 0 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 g 0 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 t 0 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0

MA0741.1_shift2 (KLF16)
; oligos_6nt_mkv2_m2 versus MA0741.1 (KLF16); m=11/35; ncol2=11; w=0; offset=0; strand=D; shift=2; score=0.707833; --gmCMCgCCCM ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0

MA0746.3_shift2 (SP3)
; oligos_6nt_mkv2_m2 versus MA0746.3 (SP3); m=12/35; ncol2=11; w=0; offset=0; strand=D; shift=2; score=0.705257; --rCCACGCCCm ; cor=; Ncor= a 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0

MA0471.3_rc_shift2 (E2F6_rc)
; oligos_6nt_mkv2_m2 versus MA0471.3_rc (E2F6_rc); m=13/35; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.689485; --TTCCCGCC-- ; cor=; Ncor= a 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 c 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 g 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 t 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0

MA1959.2_rc_shift3 (KLF7_rc)
; oligos_6nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=14/35; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.680604; ---CcMCGCCC- ; cor=; Ncor= a 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0

MA1564.2_shift3 (SP9)
; oligos_6nt_mkv2_m2 versus MA1564.2 (SP9); m=15/35; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.671594; ---cCmCGCCCm ; cor=; Ncor= a 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0

MA0493.3_rc_shift3 (KLF1_rc)
; oligos_6nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=16/35; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.665761; ---CCmCrCCC- ; cor=; Ncor= a 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0

MA1122.2_rc_shift2 (TFDP1_rc)
; oligos_6nt_mkv2_m2 versus MA1122.2_rc (TFDP1_rc); m=17/35; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.650422; --TTCCCGCs-- ; cor=; Ncor= a 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 c 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 g 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 t 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0

MA1517.2_shift3 (KLF6)
; oligos_6nt_mkv2_m2 versus MA1517.2 (KLF6); m=18/35; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.648773; ---cCACRCCCm ; cor=; Ncor= a 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0

MA1515.2_shift3 (KLF2)
; oligos_6nt_mkv2_m2 versus MA1515.2 (KLF2); m=19/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.640334; ---CCmCrCCC- ; cor=; Ncor= a 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0

MA1630.3_rc_shift3 (ZNF281_rc)
; oligos_6nt_mkv2_m2 versus MA1630.3_rc (ZNF281_rc); m=20/35; ncol2=10; w=0; offset=1; strand=R; shift=3; score=0.616553; ---CCCCTCCCC ; cor=; Ncor= a 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 c 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 g 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 t 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0

MA1653.2_shift3 (ZNF148)
; oligos_6nt_mkv2_m2 versus MA1653.2 (ZNF148); m=21/35; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.610477; ---CCCCTCCCc ; cor=; Ncor= a 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 c 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 g 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 t 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0

MA1512.2_shift3 (KLF11)
; oligos_6nt_mkv2_m2 versus MA1512.2 (KLF11); m=22/35; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.610277; ---cCACGCCCm ; cor=; Ncor= a 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0

MA1516.2_shift1 (KLF3)
; oligos_6nt_mkv2_m2 versus MA1516.2 (KLF3); m=23/35; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.607266; -grCCrCGCCC- ; cor=; Ncor= a 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0

MA0039.5_shift3 (KLF4)
; oligos_6nt_mkv2_m2 versus MA0039.5 (KLF4); m=24/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.59962; ---CCCCACCC- ; cor=; Ncor= a 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 c 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 g 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 t 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0

MA0748.3_rc_shift5 (YY2_rc)
; oligos_6nt_mkv2_m2 versus MA0748.3_rc (YY2_rc); m=25/35; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.593955; -----CCGCCAT ; cor=; Ncor= a 0 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 c 0 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 g 0 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 t 0 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0

MA1522.2_shift3 (MAZ)
; oligos_6nt_mkv2_m2 versus MA1522.2 (MAZ); m=26/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.591397; ---CCCCTCCc- ; cor=; Ncor= a 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 c 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 g 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 t 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0

MA2328.1_shift4 (ZBED4)
; oligos_6nt_mkv2_m2 versus MA2328.1 (ZBED4); m=27/35; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.565818; ----CcCGCyCC ; cor=; Ncor= a 0 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 c 0 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 g 0 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 t 0 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0

MA2341.1_shift3 (FEZF2)
; oligos_6nt_mkv2_m2 versus MA2341.1 (FEZF2); m=28/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.562868; ---CCCAGCCT- ; cor=; Ncor= a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0 0

MA0747.2_shift3 (SP8)
; oligos_6nt_mkv2_m2 versus MA0747.2 (SP8); m=29/35; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.545156; ---mCACgCCCm ; cor=; Ncor= a 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0

MA0758.1_shift0 (E2F7)
; oligos_6nt_mkv2_m2 versus MA0758.1 (E2F7); m=30/35; ncol2=14; w=-2; offset=-2; strand=D; shift=0; score=0.50767; tTTTCCCGCCAA ; cor=; Ncor= a 222.0 38.0 0.0 0.0 0.0 0.0 0.0 2.0 0.0 0.0 912.0 930.0 c 72.0 7.0 3.0 1.0 960.0 961.0 965.0 1.0 986.0 977.0 0.0 1.0 g 182.0 18.0 0.0 0.0 2.0 10.0 0.0 995.0 0.0 17.0 0.0 3.0 t 577.0 891.0 963.0 957.0 0.0 0.0 0.0 0.0 0.0 1.0 5.0 6.0

MA0753.3_shift4 (ZNF740)
; oligos_6nt_mkv2_m2 versus MA0753.3 (ZNF740); m=31/35; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.479537; ----CCCCCCCC ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0

MA1578.2_shift4 (VEZF1)
; oligos_6nt_mkv2_m2 versus MA1578.2 (VEZF1); m=32/35; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.454931; ----CCCCCC-- ; cor=; Ncor= a 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 c 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 g 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 t 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0

MA1965.2_shift5 (SP5)
; oligos_6nt_mkv2_m2 versus MA1965.2 (SP5); m=33/35; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.425085; -----CCTCCC- ; cor=; Ncor= a 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 c 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 g 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 t 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0

MA0657.2_shift1 (KLF13)
; oligos_6nt_mkv2_m2 versus MA0657.2 (KLF13); m=34/35; ncol2=17; w=-1; offset=-1; strand=D; shift=1; score=0.421152; -tRmCACGCCCC ; cor=; Ncor= a 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 c 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 g 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 t 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0

MA0162.5_shift5 (EGR1)
; oligos_6nt_mkv2_m2 versus MA0162.5 (EGR1); m=35/35; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.405046; -----mCGCCCA ; cor=; Ncor= a 0 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 c 0 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 g 0 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 t 0 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift3 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift3 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---gkCGGGGCyr ; Alignment reference a 0 0 0 3 1 0 0 0 0 0 0 2 8 c 0 0 0 6 7 32 0 0 2 0 31 17 5 g 0 0 0 16 16 0 32 31 30 32 0 5 15 t 0 0 0 7 8 0 0 1 0 0 1 8 4

MA2328.1_rc_shift4 (ZBED4_rc)
; oligos_6nt_mkv2_m1 versus MA2328.1_rc (ZBED4_rc); m=1/27; ncol2=10; w=0; offset=1; strand=R; shift=4; score=0.704214; ----GCGGrGCGg ; cor=; Ncor= a 0 0 0 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 c 0 0 0 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 g 0 0 0 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 t 0 0 0 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0

MA1615.2_shift5 (Plagl1)
; oligos_6nt_mkv2_m1 versus MA1615.2 (Plagl1); m=2/27; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.612582; -----tGGGGCCA ; cor=; Ncor= a 0 0 0 0 0 1919.0 197.0 1213.0 187.0 180.0 782.0 181.0 12064.0 c 0 0 0 0 0 1471.0 243.0 356.0 266.0 336.0 12737.0 13152.0 686.0 g 0 0 0 0 0 1338.0 13595.0 12261.0 13517.0 13495.0 313.0 422.0 1032.0 t 0 0 0 0 0 9425.0 118.0 323.0 183.0 142.0 321.0 398.0 371.0

MA1516.2_rc_shift2 (KLF3_rc)
; oligos_6nt_mkv2_m1 versus MA1516.2_rc (KLF3_rc); m=3/27; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.575649; --GGGCGyGGyc- ; cor=; Ncor= a 0 0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 705.0 207.0 6319.0 0 c 0 0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 1954.0 18489.0 26568.0 0 g 0 0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 43259.0 615.0 2655.0 0 t 0 0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0 1442.0 24771.0 7717.0 0

MA1548.2_rc_shift5 (PLAGL2_rc)
; oligos_6nt_mkv2_m1 versus MA1548.2_rc (PLAGL2_rc); m=4/27; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.570542; -----GGGGGCCC ; cor=; Ncor= a 0 0 0 0 0 198.0 74.0 0.0 0.0 0.0 0.0 0.0 107.0 c 0 0 0 0 0 25.0 0.0 0.0 0.0 200.0 848.0 999.0 813.0 g 0 0 0 0 0 684.0 925.0 999.0 999.0 799.0 151.0 0.0 39.0 t 0 0 0 0 0 90.0 0.0 0.0 0.0 0.0 0.0 0.0 39.0

MA1513.2_rc_shift2 (KLF15_rc)
; oligos_6nt_mkv2_m1 versus MA1513.2_rc (KLF15_rc); m=5/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.56826; --GGGCGGGg--- ; cor=; Ncor= a 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 c 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 g 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 t 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0

MA1959.2_shift2 (KLF7)
; oligos_6nt_mkv2_m1 versus MA1959.2 (KLF7); m=6/27; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.552075; --GGGCGKgG--- ; cor=; Ncor= a 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 c 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 g 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 t 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0

MA0493.3_shift2 (KLF1)
; oligos_6nt_mkv2_m1 versus MA0493.3 (KLF1); m=7/27; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.535457; --GGGyGkGG--- ; cor=; Ncor= a 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 c 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 g 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 t 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0

MA0599.1_rc_shift1 (KLF5_rc)
; oligos_6nt_mkv2_m1 versus MA0599.1_rc (KLF5_rc); m=8/27; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.532319; -dGGGyGKGGc-- ; cor=; Ncor= a 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0

MA0742.2_shift1 (KLF12)
; oligos_6nt_mkv2_m1 versus MA0742.2 (KLF12); m=9/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.529022; -GGGGCGGGG--- ; cor=; Ncor= a 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 c 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 g 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 t 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0

MA1511.2_shift1 (KLF10)
; oligos_6nt_mkv2_m1 versus MA1511.2 (KLF10); m=10/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.515419; -GGGGCGKGG--- ; cor=; Ncor= a 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 c 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 g 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 t 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0

MA0516.3_shift1 (SP2)
; oligos_6nt_mkv2_m1 versus MA0516.3 (SP2); m=11/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.513529; -GGGGCGGGg--- ; cor=; Ncor= a 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 c 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 g 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 t 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0

MA0685.2_shift1 (SP4)
; oligos_6nt_mkv2_m1 versus MA0685.2 (SP4); m=12/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.50945; -gGGGMGGrG--- ; cor=; Ncor= a 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 c 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 g 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 t 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0

MA0740.2_shift1 (KLF14)
; oligos_6nt_mkv2_m1 versus MA0740.2 (KLF14); m=13/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.507177; -kGGGCGKGG--- ; cor=; Ncor= a 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 c 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 g 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 t 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0

MA0079.5_shift1 (SP1)
; oligos_6nt_mkv2_m1 versus MA0079.5 (SP1); m=14/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.503978; -GGGGMGGrG--- ; cor=; Ncor= a 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 c 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 g 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 t 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0

MA1961.2_shift0 (PATZ1)
; oligos_6nt_mkv2_m1 versus MA1961.2 (PATZ1); m=15/27; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.497545; sGGGGmGGGGs-- ; cor=; Ncor= a 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 0 c 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 0 g 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 0 t 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0 0

MA1712.2_rc_shift2 (ZNF454_rc)
; oligos_6nt_mkv2_m1 versus MA1712.2_rc (ZNF454_rc); m=16/27; ncol2=17; w=-1; offset=-1; strand=R; shift=2; score=0.480094; --CmbmrGGgCCs ; cor=; Ncor= a 0 0 32.0 340.0 32.0 263.0 417.0 83.0 135.0 135.0 6.0 6.0 135.0 c 0 0 699.0 391.0 417.0 596.0 58.0 6.0 32.0 160.0 981.0 853.0 391.0 g 0 0 160.0 160.0 288.0 83.0 519.0 776.0 724.0 571.0 6.0 32.0 314.0 t 0 0 109.0 109.0 263.0 58.0 6.0 135.0 109.0 135.0 6.0 109.0 160.0

MA1515.2_rc_shift2 (KLF2_rc)
; oligos_6nt_mkv2_m1 versus MA1515.2_rc (KLF2_rc); m=17/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.475523; --GGGyGkGG--- ; cor=; Ncor= a 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 346.0 0 0 0 c 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 495.0 0 0 0 g 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 4622.0 0 0 0 t 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0 741.0 0 0 0

MA0746.3_rc_shift0 (SP3_rc)
; oligos_6nt_mkv2_m1 versus MA0746.3_rc (SP3_rc); m=18/27; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.467221; GkGGGCGTGGy-- ; cor=; Ncor= a 1475.0 552.0 718.0 9.0 0.0 504.0 12.0 11.0 202.0 345.0 421.0 0 0 c 297.0 39.0 2.0 0.0 0.0 6591.0 0.0 2.0 54.0 226.0 4445.0 0 0 g 5116.0 3160.0 6591.0 6591.0 6591.0 0.0 6591.0 1338.0 6591.0 6591.0 531.0 0 0 t 556.0 3430.0 2.0 0.0 0.0 465.0 6.0 5253.0 160.0 664.0 2146.0 0 0

MA0039.5_rc_shift2 (KLF4_rc)
; oligos_6nt_mkv2_m1 versus MA0039.5_rc (KLF4_rc); m=19/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.463726; --GGGTGGGG--- ; cor=; Ncor= a 0 0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 0 0 0 c 0 0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 0 0 0 g 0 0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 0 0 0 t 0 0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 0 0 0

MA1522.2_rc_shift2 (MAZ_rc)
; oligos_6nt_mkv2_m1 versus MA1522.2_rc (MAZ_rc); m=20/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.449493; --gGGAGGGG--- ; cor=; Ncor= a 0 0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 0 0 0 c 0 0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 0 0 0 g 0 0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 0 0 0 t 0 0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 0 0 0

MA2341.1_rc_shift2 (FEZF2_rc)
; oligos_6nt_mkv2_m1 versus MA2341.1_rc (FEZF2_rc); m=21/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.446225; --AGGCTGGG--- ; cor=; Ncor= a 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 0 0 0 c 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 0 0 0 g 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 0 0 0 t 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0 0 0 0

MA0741.1_rc_shift0 (KLF16_rc)
; oligos_6nt_mkv2_m1 versus MA0741.1_rc (KLF16_rc); m=22/27; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.435463; GKGGGcGKGkc-- ; cor=; Ncor= a 370.0 40.0 97.0 0.0 0.0 403.0 19.0 0.0 45.0 116.0 240.0 0 0 c 23.0 19.0 3.0 8.0 0.0 1612.0 17.0 32.0 6.0 77.0 1612.0 0 0 g 1612.0 1175.0 1612.0 1612.0 1612.0 173.0 1612.0 461.0 1612.0 1612.0 535.0 0 0 t 32.0 437.0 16.0 2.0 8.0 497.0 66.0 1150.0 62.0 901.0 666.0 0 0

MA0738.2_rc_shift7 (HIC2_rc)
; oligos_6nt_mkv2_m1 versus MA0738.2_rc (HIC2_rc); m=23/27; ncol2=6; w=0; offset=4; strand=R; shift=7; score=0.422084; -------KGGCAy ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 59.0 0.0 151.0 4891.0 367.0 c 0 0 0 0 0 0 0 0.0 0.0 14.0 4891.0 0.0 2285.0 g 0 0 0 0 0 0 0 3425.0 4891.0 4891.0 354.0 117.0 394.0 t 0 0 0 0 0 0 0 1466.0 435.0 23.0 494.0 0.0 2606.0

MA1564.2_rc_shift0 (SP9_rc)
; oligos_6nt_mkv2_m1 versus MA1564.2_rc (SP9_rc); m=24/27; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.405955; gkGGGCGkGg--- ; cor=; Ncor= a 588.0 353.0 412.0 30.0 14.0 173.0 9.0 96.0 284.0 518.0 0 0 0 c 191.0 38.0 24.0 0.0 0.0 2451.0 17.0 56.0 113.0 309.0 0 0 0 g 1863.0 1259.0 2451.0 2451.0 2451.0 200.0 2451.0 1127.0 2451.0 2451.0 0 0 0 t 188.0 1192.0 39.0 0.0 22.0 211.0 2.0 2451.0 321.0 566.0 0 0 0

MA1630.3_shift0 (ZNF281)
; oligos_6nt_mkv2_m1 versus MA1630.3 (ZNF281); m=25/27; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.404004; GGGGGAGGGG--- ; cor=; Ncor= a 1.0 1.0 35.0 1.0 1.0 720.0 122.0 1.0 41.0 47.0 0 0 0 c 1.0 1.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 27.0 0 0 0 g 998.0 998.0 963.0 998.0 998.0 1.0 772.0 998.0 940.0 920.0 0 0 0 t 1.0 1.0 1.0 1.0 1.0 96.0 105.0 1.0 18.0 7.0 0 0 0

MA1599.2_rc_shift6 (ZNF682_rc)
; oligos_6nt_mkv2_m1 versus MA1599.2_rc (ZNF682_rc); m=26/27; ncol2=11; w=0; offset=3; strand=R; shift=6; score=0.400998; ------GGGGCTT ; cor=; Ncor= a 0 0 0 0 0 0 64.0 7.0 11.0 33.0 7.0 6.0 13.0 c 0 0 0 0 0 0 32.0 10.0 9.0 13.0 1038.0 22.0 20.0 g 0 0 0 0 0 0 896.0 1034.0 1033.0 999.0 7.0 31.0 72.0 t 0 0 0 0 0 0 66.0 7.0 5.0 13.0 6.0 999.0 953.0

MA1986.2_shift7 (ZNF692)
; oligos_6nt_mkv2_m1 versus MA1986.2 (ZNF692); m=27/27; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.400129; -------gGGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1403.0 0.0 31.0 27.0 41.0 3.0 c 0 0 0 0 0 0 0 1314.0 90.0 4.0 10689.0 10446.0 10545.0 g 0 0 0 0 0 0 0 6833.0 10642.0 10684.0 7.0 241.0 176.0 t 0 0 0 0 0 0 0 1195.0 13.0 26.0 22.0 17.0 21.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift3 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift3 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ggGCGGGGCCrg ; Alignment reference a 0 0 0 5 3 1 1 0 2 0 0 0 0 10 9 c 0 0 0 8 7 4 38 4 1 1 2 35 34 6 7 g 0 0 0 23 22 32 0 35 35 38 35 1 3 14 19 t 0 0 0 3 7 2 0 0 1 0 2 3 2 9 4

MA2328.1_rc_shift5 (ZBED4_rc)
; oligos_7nt_mkv2_m1 versus MA2328.1_rc (ZBED4_rc); m=1/32; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.684341; -----GCGGrGCGgG ; cor=; Ncor= a 0 0 0 0 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 60.0 c 0 0 0 0 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 80.0 g 0 0 0 0 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 479.0 t 0 0 0 0 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0 41.0

MA1516.2_rc_shift3 (KLF3_rc)
; oligos_7nt_mkv2_m1 versus MA1516.2_rc (KLF3_rc); m=2/32; ncol2=10; w=0; offset=0; strand=R; shift=3; score=0.642965; ---GGGCGyGGyc-- ; cor=; Ncor= a 0 0 0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 705.0 207.0 6319.0 0 0 c 0 0 0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 1954.0 18489.0 26568.0 0 0 g 0 0 0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 43259.0 615.0 2655.0 0 0 t 0 0 0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0 1442.0 24771.0 7717.0 0 0

MA1513.2_rc_shift3 (KLF15_rc)
; oligos_7nt_mkv2_m1 versus MA1513.2_rc (KLF15_rc); m=3/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.624968; ---GGGCGGGg---- ; cor=; Ncor= a 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 0 c 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 0 g 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 0 t 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0 0

MA0146.3_shift4 (Zfx)
; oligos_7nt_mkv2_m1 versus MA0146.3 (Zfx); m=4/32; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.608417; ----gsCbvGGCCT- ; cor=; Ncor= a 0 0 0 0 72.0 10.0 6.0 30.0 191.0 8.0 0.0 0.0 0.0 0.0 0 c 0 0 0 0 49.0 297.0 361.0 124.0 153.0 2.0 3.0 481.0 480.0 1.0 0 g 0 0 0 0 297.0 144.0 2.0 183.0 122.0 470.0 477.0 0.0 0.0 0.0 0 t 0 0 0 0 61.0 30.0 112.0 144.0 15.0 1.0 1.0 0.0 1.0 480.0 0

MA1959.2_shift3 (KLF7)
; oligos_7nt_mkv2_m1 versus MA1959.2 (KLF7); m=5/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.600772; ---GGGCGKgG---- ; cor=; Ncor= a 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 0 c 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 0 g 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 0 t 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0 0

MA0493.3_shift3 (KLF1)
; oligos_7nt_mkv2_m1 versus MA0493.3 (KLF1); m=6/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.588534; ---GGGyGkGG---- ; cor=; Ncor= a 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 0 c 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 0 g 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 0 t 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0 0

MA0599.1_rc_shift2 (KLF5_rc)
; oligos_7nt_mkv2_m1 versus MA0599.1_rc (KLF5_rc); m=7/32; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.586203; --dGGGyGKGGc--- ; cor=; Ncor= a 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 0 c 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 0 g 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 0 t 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0 0

MA0742.2_shift2 (KLF12)
; oligos_7nt_mkv2_m1 versus MA0742.2 (KLF12); m=8/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.583283; --GGGGCGGGG---- ; cor=; Ncor= a 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 0 c 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 0 g 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 0 t 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0 0

MA0516.3_shift2 (SP2)
; oligos_7nt_mkv2_m1 versus MA0516.3 (SP2); m=9/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.573585; --GGGGCGGGg---- ; cor=; Ncor= a 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 0 c 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 0 g 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 0 t 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0 0

MA1511.2_shift2 (KLF10)
; oligos_7nt_mkv2_m1 versus MA1511.2 (KLF10); m=10/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.56787; --GGGGCGKGG---- ; cor=; Ncor= a 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 0 c 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 0 g 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 0 t 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0 0

MA0740.2_shift2 (KLF14)
; oligos_7nt_mkv2_m1 versus MA0740.2 (KLF14); m=11/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.561463; --kGGGCGKGG---- ; cor=; Ncor= a 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 0 c 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 0 g 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 0 t 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0 0

MA0685.2_shift2 (SP4)
; oligos_7nt_mkv2_m1 versus MA0685.2 (SP4); m=12/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.557873; --gGGGMGGrG---- ; cor=; Ncor= a 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 0 c 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 g 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 0 t 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0 0

MA1961.2_shift1 (PATZ1)
; oligos_7nt_mkv2_m1 versus MA1961.2 (PATZ1); m=13/32; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.556099; -sGGGGmGGGGs--- ; cor=; Ncor= a 0 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 0 0 c 0 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 0 0 g 0 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 0 0 t 0 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0 0 0

MA0079.5_shift2 (SP1)
; oligos_7nt_mkv2_m1 versus MA0079.5 (SP1); m=14/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.554425; --GGGGMGGrG---- ; cor=; Ncor= a 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 0 c 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 0 g 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 0 t 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0 0

MA1515.2_rc_shift3 (KLF2_rc)
; oligos_7nt_mkv2_m1 versus MA1515.2_rc (KLF2_rc); m=15/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.544427; ---GGGyGkGG---- ; cor=; Ncor= a 0 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 346.0 0 0 0 0 c 0 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 495.0 0 0 0 0 g 0 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 4622.0 0 0 0 0 t 0 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0 741.0 0 0 0 0

MA1712.2_rc_shift3 (ZNF454_rc)
; oligos_7nt_mkv2_m1 versus MA1712.2_rc (ZNF454_rc); m=16/32; ncol2=17; w=0; offset=0; strand=R; shift=3; score=0.542716; ---CmbmrGGgCCss ; cor=; Ncor= a 0 0 0 32.0 340.0 32.0 263.0 417.0 83.0 135.0 135.0 6.0 6.0 135.0 186.0 c 0 0 0 699.0 391.0 417.0 596.0 58.0 6.0 32.0 160.0 981.0 853.0 391.0 263.0 g 0 0 0 160.0 160.0 288.0 83.0 519.0 776.0 724.0 571.0 6.0 32.0 314.0 468.0 t 0 0 0 109.0 109.0 263.0 58.0 6.0 135.0 109.0 135.0 6.0 109.0 160.0 83.0

MA1615.2_shift6 (Plagl1)
; oligos_7nt_mkv2_m1 versus MA1615.2 (Plagl1); m=17/32; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.531419; ------tGGGGCCA- ; cor=; Ncor= a 0 0 0 0 0 0 1919.0 197.0 1213.0 187.0 180.0 782.0 181.0 12064.0 0 c 0 0 0 0 0 0 1471.0 243.0 356.0 266.0 336.0 12737.0 13152.0 686.0 0 g 0 0 0 0 0 0 1338.0 13595.0 12261.0 13517.0 13495.0 313.0 422.0 1032.0 0 t 0 0 0 0 0 0 9425.0 118.0 323.0 183.0 142.0 321.0 398.0 371.0 0

MA0746.3_rc_shift1 (SP3_rc)
; oligos_7nt_mkv2_m1 versus MA0746.3_rc (SP3_rc); m=18/32; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.527058; -GkGGGCGTGGy--- ; cor=; Ncor= a 0 1475.0 552.0 718.0 9.0 0.0 504.0 12.0 11.0 202.0 345.0 421.0 0 0 0 c 0 297.0 39.0 2.0 0.0 0.0 6591.0 0.0 2.0 54.0 226.0 4445.0 0 0 0 g 0 5116.0 3160.0 6591.0 6591.0 6591.0 0.0 6591.0 1338.0 6591.0 6591.0 531.0 0 0 0 t 0 556.0 3430.0 2.0 0.0 0.0 465.0 6.0 5253.0 160.0 664.0 2146.0 0 0 0

MA0039.5_rc_shift3 (KLF4_rc)
; oligos_7nt_mkv2_m1 versus MA0039.5_rc (KLF4_rc); m=19/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.521203; ---GGGTGGGG---- ; cor=; Ncor= a 0 0 0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 0 0 0 0 c 0 0 0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 0 0 0 0 g 0 0 0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 0 0 0 0 t 0 0 0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 0 0 0 0

MA1522.2_rc_shift3 (MAZ_rc)
; oligos_7nt_mkv2_m1 versus MA1522.2_rc (MAZ_rc); m=20/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.510409; ---gGGAGGGG---- ; cor=; Ncor= a 0 0 0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 0 0 0 0 c 0 0 0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 0 0 0 0 g 0 0 0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 0 0 0 0 t 0 0 0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 0 0 0 0

MA1548.2_rc_shift6 (PLAGL2_rc)
; oligos_7nt_mkv2_m1 versus MA1548.2_rc (PLAGL2_rc); m=21/32; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.503672; ------GGGGGCCC- ; cor=; Ncor= a 0 0 0 0 0 0 198.0 74.0 0.0 0.0 0.0 0.0 0.0 107.0 0 c 0 0 0 0 0 0 25.0 0.0 0.0 0.0 200.0 848.0 999.0 813.0 0 g 0 0 0 0 0 0 684.0 925.0 999.0 999.0 799.0 151.0 0.0 39.0 0 t 0 0 0 0 0 0 90.0 0.0 0.0 0.0 0.0 0.0 0.0 39.0 0

MA0741.1_rc_shift1 (KLF16_rc)
; oligos_7nt_mkv2_m1 versus MA0741.1_rc (KLF16_rc); m=22/32; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.502663; -GKGGGcGKGkc--- ; cor=; Ncor= a 0 370.0 40.0 97.0 0.0 0.0 403.0 19.0 0.0 45.0 116.0 240.0 0 0 0 c 0 23.0 19.0 3.0 8.0 0.0 1612.0 17.0 32.0 6.0 77.0 1612.0 0 0 0 g 0 1612.0 1175.0 1612.0 1612.0 1612.0 173.0 1612.0 461.0 1612.0 1612.0 535.0 0 0 0 t 0 32.0 437.0 16.0 2.0 8.0 497.0 66.0 1150.0 62.0 901.0 666.0 0 0 0

MA1564.2_rc_shift1 (SP9_rc)
; oligos_7nt_mkv2_m1 versus MA1564.2_rc (SP9_rc); m=23/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.471176; -gkGGGCGkGg---- ; cor=; Ncor= a 0 588.0 353.0 412.0 30.0 14.0 173.0 9.0 96.0 284.0 518.0 0 0 0 0 c 0 191.0 38.0 24.0 0.0 0.0 2451.0 17.0 56.0 113.0 309.0 0 0 0 0 g 0 1863.0 1259.0 2451.0 2451.0 2451.0 200.0 2451.0 1127.0 2451.0 2451.0 0 0 0 0 t 0 188.0 1192.0 39.0 0.0 22.0 211.0 2.0 2451.0 321.0 566.0 0 0 0 0

MA1630.3_shift1 (ZNF281)
; oligos_7nt_mkv2_m1 versus MA1630.3 (ZNF281); m=24/32; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.462974; -GGGGGAGGGG---- ; cor=; Ncor= a 0 1.0 1.0 35.0 1.0 1.0 720.0 122.0 1.0 41.0 47.0 0 0 0 0 c 0 1.0 1.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 27.0 0 0 0 0 g 0 998.0 998.0 963.0 998.0 998.0 1.0 772.0 998.0 940.0 920.0 0 0 0 0 t 0 1.0 1.0 1.0 1.0 1.0 96.0 105.0 1.0 18.0 7.0 0 0 0 0

MA1653.2_rc_shift1 (ZNF148_rc)
; oligos_7nt_mkv2_m1 versus MA1653.2_rc (ZNF148_rc); m=25/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.454083; -ggGGGAGGGG---- ; cor=; Ncor= a 0 1180.0 1190.0 1082.0 465.0 67.0 10040.0 66.0 136.0 200.0 113.0 0 0 0 0 c 0 2064.0 1924.0 392.0 460.0 112.0 1012.0 211.0 401.0 471.0 205.0 0 0 0 0 g 0 7114.0 7239.0 9283.0 9922.0 10954.0 14.0 10833.0 10526.0 10396.0 10799.0 0 0 0 0 t 0 841.0 846.0 442.0 352.0 66.0 133.0 89.0 136.0 132.0 82.0 0 0 0 0

MA1517.2_rc_shift2 (KLF6_rc)
; oligos_7nt_mkv2_m1 versus MA1517.2_rc (KLF6_rc); m=26/32; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.45224; --kGGGYGTGg---- ; cor=; Ncor= a 0 0 520.0 64.0 0.0 0.0 0.0 24.0 60.0 140.0 219.0 0 0 0 0 c 0 0 52.0 12.0 60.0 0.0 2192.0 0.0 60.0 298.0 332.0 0 0 0 0 g 0 0 665.0 2192.0 2192.0 2192.0 0.0 2192.0 284.0 2192.0 2192.0 0 0 0 0 t 0 0 955.0 71.0 25.0 0.0 1024.0 0.0 2192.0 432.0 569.0 0 0 0 0

MA1512.2_rc_shift1 (KLF11_rc)
; oligos_7nt_mkv2_m1 versus MA1512.2_rc (KLF11_rc); m=27/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.43215; -GkGGGCGTGg---- ; cor=; Ncor= a 0 1281.0 761.0 885.0 7.0 23.0 349.0 38.0 27.0 506.0 1192.0 0 0 0 0 c 0 358.0 69.0 4.0 20.0 18.0 8291.0 0.0 115.0 156.0 401.0 0 0 0 0 g 0 8403.0 4226.0 8941.0 9166.0 9161.0 52.0 9142.0 1289.0 8662.0 5549.0 0 0 0 0 t 0 581.0 4689.0 0.0 1.0 11.0 2426.0 0.0 8655.0 650.0 2022.0 0 0 0 0

MA0753.3_rc_shift1 (ZNF740_rc)
; oligos_7nt_mkv2_m1 versus MA0753.3_rc (ZNF740_rc); m=28/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.425708; -gTGGGGGGGG---- ; cor=; Ncor= a 0 246.0 134.0 4.0 3.0 6.0 11.0 15.0 16.0 1.0 49.0 0 0 0 0 c 0 54.0 68.0 6.0 3.0 7.0 3.0 7.0 4.0 14.0 37.0 0 0 0 0 g 0 1055.0 239.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 0 0 0 0 t 0 207.0 1055.0 115.0 2.0 10.0 23.0 22.0 18.0 110.0 60.0 0 0 0 0

MA1986.2_shift8 (ZNF692)
; oligos_7nt_mkv2_m1 versus MA1986.2 (ZNF692); m=29/32; ncol2=8; w=0; offset=5; strand=D; shift=8; score=0.412541; --------gGGCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 c 0 0 0 0 0 0 0 0 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 g 0 0 0 0 0 0 0 0 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 t 0 0 0 0 0 0 0 0 1195.0 13.0 26.0 22.0 17.0 21.0 0.0

MA1727.2_shift7 (ZNF417)
; oligos_7nt_mkv2_m1 versus MA1727.2 (ZNF417); m=30/32; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.411255; -------GGCGCCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.0 1.0 7.0 1.0 1.0 31.0 984.0 0 c 0 0 0 0 0 0 0 1.0 1.0 936.0 1.0 990.0 954.0 13.0 0 g 0 0 0 0 0 0 0 996.0 996.0 1.0 996.0 1.0 1.0 1.0 0 t 0 0 0 0 0 0 0 1.0 1.0 55.0 1.0 7.0 13.0 1.0 0

MA0747.2_rc_shift0 (SP8_rc)
; oligos_7nt_mkv2_m1 versus MA0747.2_rc (SP8_rc); m=31/32; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.406889; rGkGGGcGTGk---- ; cor=; Ncor= a 82.0 39.0 3.0 15.0 0.0 2.0 39.0 5.0 2.0 13.0 4.0 0 0 0 0 c 1.0 21.0 6.0 4.0 3.0 6.0 167.0 1.0 1.0 0.0 0.0 0 0 0 0 g 52.0 167.0 77.0 167.0 167.0 167.0 37.0 167.0 33.0 167.0 113.0 0 0 0 0 t 31.0 13.0 90.0 0.0 2.0 5.0 25.0 7.0 133.0 25.0 54.0 0 0 0 0

MA2330.1_rc_shift7 (ZBTB24_rc)
; oligos_7nt_mkv2_m1 versus MA2330.1_rc (ZBTB24_rc); m=32/32; ncol2=10; w=0; offset=4; strand=R; shift=7; score= 0.4063; -------gGGTCCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 134.0 55.0 33.0 72.0 35.0 30.0 46.0 26.0 c 0 0 0 0 0 0 0 74.0 48.0 49.0 57.0 677.0 738.0 62.0 24.0 g 0 0 0 0 0 0 0 557.0 641.0 705.0 70.0 67.0 35.0 53.0 750.0 t 0 0 0 0 0 0 0 63.0 84.0 41.0 629.0 49.0 25.0 667.0 28.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift6 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift6 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=11; shift=6; ncol=17; ------ykCCTCCCGrs ; Alignment reference a 0 0 0 0 0 0 3 1 1 0 1 0 1 0 0 8 4 c 0 0 0 0 0 0 7 4 19 19 0 21 19 21 0 3 8 g 0 0 0 0 0 0 5 9 1 2 0 0 0 0 21 8 7 t 0 0 0 0 0 0 6 7 0 0 20 0 1 0 0 2 2

MA1653.2_shift6 (ZNF148)
; oligos_7nt_mkv2_m2 versus MA1653.2 (ZNF148); m=1/15; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.648718; ------CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA1596.1_shift1 (ZNF460)
; oligos_7nt_mkv2_m2 versus MA1596.1 (ZNF460); m=2/15; ncol2=16; w=-5; offset=-5; strand=D; shift=1; score=0.609225; -rCCTCmGCCTCCCrrG ; cor=; Ncor= a 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0

MA1522.2_shift6 (MAZ)
; oligos_7nt_mkv2_m2 versus MA1522.2 (MAZ); m=3/15; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.598154; ------CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0

MA0528.3_rc_shift7 (ZNF263_rc)
; oligos_7nt_mkv2_m2 versus MA0528.3_rc (ZNF263_rc); m=4/15; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.593763; -------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0

MA1965.2_shift8 (SP5)
; oligos_7nt_mkv2_m2 versus MA1965.2 (SP5); m=5/15; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.54387; --------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0

MA1122.2_rc_shift9 (TFDP1_rc)
; oligos_7nt_mkv2_m2 versus MA1122.2_rc (TFDP1_rc); m=6/15; ncol2=8; w=0; offset=3; strand=R; shift=9; score=0.531972; ---------TTCCCGCs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 c 0 0 0 0 0 0 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 g 0 0 0 0 0 0 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 t 0 0 0 0 0 0 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0

MA0493.3_rc_shift6 (KLF1_rc)
; oligos_7nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=7/15; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.516507; ------CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA1959.2_rc_shift6 (KLF7_rc)
; oligos_7nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=8/15; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.513414; ------CcMCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA0471.3_rc_shift9 (E2F6_rc)
; oligos_7nt_mkv2_m2 versus MA0471.3_rc (E2F6_rc); m=9/15; ncol2=8; w=0; offset=3; strand=R; shift=9; score=0.511072; ---------TTCCCGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 c 0 0 0 0 0 0 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 g 0 0 0 0 0 0 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 t 0 0 0 0 0 0 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0

MA1587.1_shift2 (ZNF135)
; oligos_7nt_mkv2_m2 versus MA1587.1 (ZNF135); m=10/15; ncol2=14; w=-4; offset=-4; strand=D; shift=2; score=0.488082; --cCTCGACCTCCyrr- ; cor=; Ncor= a 0 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0

MA0865.3_shift9 (E2F8)
; oligos_7nt_mkv2_m2 versus MA0865.3 (E2F8); m=11/15; ncol2=9; w=0; offset=3; strand=D; shift=9; score=0.482156; ---------tTCCCGCc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 c 0 0 0 0 0 0 0 0 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 g 0 0 0 0 0 0 0 0 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 t 0 0 0 0 0 0 0 0 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0

MA2099.1_shift5 (ZNF770)
; oligos_7nt_mkv2_m2 versus MA2099.1 (ZNF770); m=12/15; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.460515; -----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0

MA1578.2_shift8 (VEZF1)
; oligos_7nt_mkv2_m2 versus MA1578.2 (VEZF1); m=13/15; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.411801; --------CCCCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0

MA1714.2_rc_shift0 (ZNF675_rc)
; oligos_7nt_mkv2_m2 versus MA1714.2_rc (ZNF675_rc); m=14/15; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.410324; CATTtTgkCCTCytrrk ; cor=; Ncor= a 21.0 699.0 1.0 1.0 44.0 103.0 199.0 28.0 108.0 115.0 51.0 14.0 21.0 140.0 428.0 320.0 101.0 c 937.0 46.0 3.0 3.0 172.0 33.0 35.0 78.0 857.0 843.0 233.0 934.0 647.0 174.0 94.0 133.0 247.0 g 5.0 224.0 5.0 3.0 108.0 83.0 656.0 304.0 5.0 7.0 21.0 10.0 19.0 245.0 338.0 361.0 261.0 t 37.0 30.0 991.0 994.0 676.0 781.0 110.0 590.0 30.0 35.0 695.0 42.0 313.0 441.0 140.0 186.0 391.0

MA1652.2_rc_shift4 (ZKSCAN5_rc)
; oligos_7nt_mkv2_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=15/15; ncol2=9; w=-2; offset=-2; strand=R; shift=4; score=0.400055; ----cTCACyTCC---- ; cor=; Ncor= a 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 c 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 g 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 t 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift2 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift2 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=11; shift=2; ncol=13; --vwCTTGAACty ; Alignment reference a 0 0 6 8 0 1 0 0 21 20 1 5 3 c 0 0 7 3 22 1 2 0 0 0 19 4 11 g 0 0 9 3 0 0 3 21 0 2 0 3 1 t 0 0 0 8 0 20 17 1 1 0 2 10 7

MA1541.2_rc_shift0 (NR6A1_rc)
; oligos_7nt_mkv2_m3 versus MA1541.2_rc (NR6A1_rc); m=1/12; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.638146; YGamCTTGAmCTT ; cor=; Ncor= a 41.0 254.0 896.0 373.0 62.0 65.0 14.0 40.0 896.0 453.0 62.0 51.0 11.0 c 359.0 109.0 355.0 524.0 896.0 35.0 2.0 29.0 26.0 443.0 896.0 72.0 44.0 g 20.0 896.0 185.0 11.0 15.0 96.0 0.0 896.0 74.0 12.0 9.0 91.0 4.0 t 896.0 39.0 91.0 29.0 21.0 896.0 896.0 7.0 1.0 19.0 13.0 896.0 896.0

MA1540.3_rc_shift0 (NR5A1_rc)
; oligos_7nt_mkv2_m3 versus MA1540.3_rc (NR5A1_rc); m=2/12; ncol2=12; w=-2; offset=-2; strand=R; shift=0; score=0.632868; TGaCCTTGAact- ; cor=; Ncor= a 198.0 247.0 3173.0 117.0 85.0 111.0 92.0 120.0 3843.0 2845.0 606.0 721.0 0 c 154.0 112.0 171.0 4440.0 4461.0 160.0 125.0 189.0 130.0 729.0 2825.0 633.0 0 g 144.0 4271.0 964.0 53.0 45.0 86.0 193.0 4316.0 564.0 747.0 558.0 398.0 0 t 4201.0 67.0 389.0 87.0 106.0 4340.0 4287.0 72.0 160.0 376.0 708.0 2945.0 0

MA0693.4_rc_shift6 (Vdr_rc)
; oligos_7nt_mkv2_m3 versus MA0693.4_rc (Vdr_rc); m=3/12; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.60031; ------TGAACTc ; cor=; Ncor= a 0 0 0 0 0 0 750.0 2057.0 35628.0 35489.0 1110.0 813.0 2150.0 c 0 0 0 0 0 0 826.0 406.0 574.0 1555.0 36028.0 1137.0 25359.0 g 0 0 0 0 0 0 661.0 34477.0 655.0 520.0 599.0 644.0 4678.0 t 0 0 0 0 0 0 36305.0 1602.0 1685.0 978.0 805.0 35948.0 6355.0

MA1581.2_shift3 (ZBTB6)
; oligos_7nt_mkv2_m3 versus MA1581.2 (ZBTB6); m=4/12; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.595776; ---sCTTGAGCC- ; cor=; Ncor= a 0 0 0 312.0 94.0 29.0 207.0 13.0 2158.0 58.0 56.0 102.0 0 c 0 0 0 1157.0 2080.0 104.0 45.0 59.0 28.0 20.0 2087.0 1814.0 0 g 0 0 0 593.0 25.0 52.0 409.0 2148.0 20.0 2135.0 38.0 88.0 0 t 0 0 0 165.0 28.0 2042.0 1566.0 7.0 21.0 14.0 46.0 223.0 0

MA1649.2_shift4 (ZBTB12)
; oligos_7nt_mkv2_m3 versus MA1649.2 (ZBTB12); m=5/12; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.559933; ----CTrGAAC-- ; cor=; Ncor= a 0 0 0 0 144.0 130.0 1841.0 86.0 4475.0 4508.0 51.0 0 0 c 0 0 0 0 4377.0 216.0 73.0 80.0 114.0 65.0 4511.0 0 0 g 0 0 0 0 175.0 190.0 2797.0 4478.0 106.0 103.0 50.0 0 0 t 0 0 0 0 71.0 4231.0 56.0 123.0 72.0 91.0 155.0 0 0

MA1994.2_shift2 (Nkx2-1)
; oligos_7nt_mkv2_m3 versus MA1994.2 (Nkx2-1); m=6/12; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.54592; --CACTTGA---- ; cor=; Ncor= a 0 0 289.0 15478.0 168.0 369.0 252.0 895.0 15245.0 0 0 0 0 c 0 0 14886.0 275.0 15640.0 162.0 518.0 657.0 243.0 0 0 0 0 g 0 0 181.0 146.0 118.0 605.0 315.0 14172.0 213.0 0 0 0 0 t 0 0 886.0 343.0 316.0 15106.0 15157.0 518.0 541.0 0 0 0 0

MA1534.2_shift6 (NR1I3)
; oligos_7nt_mkv2_m3 versus MA1534.2 (NR1I3); m=7/12; ncol2=8; w=0; offset=4; strand=D; shift=6; score=0.538472; ------TGAACTt ; cor=; Ncor= a 0 0 0 0 0 0 162.0 6626.0 48424.0 48424.0 0.0 0.0 14101.0 c 0 0 0 0 0 0 11168.0 100.0 2613.0 2972.0 48424.0 1870.0 15443.0 g 0 0 0 0 0 0 0.0 48424.0 342.0 0.0 0.0 0.0 3267.0 t 0 0 0 0 0 0 48424.0 0.0 791.0 0.0 0.0 48424.0 34323.0

MA2003.2_shift1 (NKX2-4)
; oligos_7nt_mkv2_m3 versus MA2003.2 (NKX2-4); m=8/12; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.463379; -cCACTTsA---- ; cor=; Ncor= a 0 385.0 14.0 1185.0 0.0 0.0 52.0 243.0 1185.0 0 0 0 0 c 0 1185.0 1185.0 127.0 1185.0 25.0 409.0 545.0 56.0 0 0 0 0 g 0 485.0 7.0 17.0 0.0 1.0 13.0 640.0 57.0 0 0 0 0 t 0 61.0 129.0 207.0 0.0 1185.0 1185.0 58.0 153.0 0 0 0 0

MA0673.2_shift1 (NKX2-8)
; oligos_7nt_mkv2_m3 versus MA0673.2 (NKX2-8); m=9/12; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.456893; -sCACTYsA---- ; cor=; Ncor= a 0 1942.0 70.0 8562.0 14.0 0.0 23.0 1738.0 8562.0 0 0 0 0 c 0 3529.0 8562.0 595.0 8562.0 91.0 3197.0 2267.0 908.0 0 0 0 0 g 0 2843.0 0.0 0.0 0.0 0.0 0.0 4286.0 696.0 0 0 0 0 t 0 249.0 2155.0 516.0 110.0 8562.0 8562.0 271.0 2158.0 0 0 0 0

MA0505.3_shift0 (Nr5A2)
; oligos_7nt_mkv2_m3 versus MA0505.3 (Nr5A2); m=10/12; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.444951; TGaCCTTGA---- ; cor=; Ncor= a 4020.0 2032.0 19888.0 327.0 299.0 364.0 266.0 340.0 26370.0 0 0 0 0 c 3118.0 869.0 1185.0 29854.0 29734.0 694.0 338.0 870.0 645.0 0 0 0 0 g 2303.0 27158.0 6736.0 124.0 166.0 359.0 285.0 29010.0 2402.0 0 0 0 0 t 21101.0 483.0 2733.0 237.0 343.0 29125.0 29653.0 322.0 1125.0 0 0 0 0

MA0672.2_shift1 (NKX2-3)
; oligos_7nt_mkv2_m3 versus MA0672.2 (NKX2-3); m=11/12; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.436016; -sCACTTra---- ; cor=; Ncor= a 0 2025.0 38.0 9278.0 8.0 0.0 0.0 4241.0 9278.0 0 0 0 0 c 0 9278.0 9278.0 98.0 9278.0 0.0 939.0 1451.0 917.0 0 0 0 0 g 0 4499.0 0.0 16.0 0.0 18.0 0.0 5037.0 1831.0 0 0 0 0 t 0 140.0 132.0 250.0 0.0 9278.0 9278.0 343.0 2437.0 0 0 0 0

MA1536.2_rc_shift6 (NR2C2_rc)
; oligos_7nt_mkv2_m3 versus MA1536.2_rc (NR2C2_rc); m=12/12; ncol2=6; w=0; offset=4; strand=R; shift=6; score=0.403463; ------YGACCy- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 0 c 0 0 0 0 0 0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 0 g 0 0 0 0 0 0 0.0 18628.0 0.0 0.0 236.0 719.0 0 t 0 0 0 0 0 0 18628.0 0.0 0.0 0.0 0.0 10232.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift3 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift3 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=12; shift=3; ncol=15; ---gsGATTACAGgy ; Alignment reference a 0 0 0 2 0 0 11 0 0 11 0 11 1 1 1 c 0 0 0 0 3 0 0 1 1 0 10 0 0 2 6 g 0 0 0 8 8 12 1 0 0 1 0 0 11 8 2 t 0 0 0 2 1 0 0 11 11 0 2 1 0 1 3

MA1547.2_rc_shift3 (PITX2_rc)
; oligos_7nt_mkv2_m4 versus MA1547.2_rc (PITX2_rc); m=1/12; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.572993; ---rGGATTAr---- ; cor=; Ncor= a 0 0 0 2222.0 189.0 0.0 8019.0 0.0 0.0 8019.0 3859.0 0 0 0 0 c 0 0 0 786.0 0.0 0.0 668.0 0.0 0.0 0.0 454.0 0 0 0 0 g 0 0 0 4129.0 8019.0 8019.0 0.0 0.0 0.0 51.0 2782.0 0 0 0 0 t 0 0 0 881.0 0.0 0.0 0.0 8019.0 8019.0 0.0 924.0 0 0 0 0

MA0712.3_shift3 (OTX2)
; oligos_7nt_mkv2_m4 versus MA0712.3 (OTX2); m=2/12; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.566461; ---rGGATTA----- ; cor=; Ncor= a 0 0 0 37155.0 5435.0 2918.0 116411.0 765.0 1913.0 114798.0 0 0 0 0 0 c 0 0 0 5322.0 827.0 1620.0 2220.0 598.0 1771.0 636.0 0 0 0 0 0 g 0 0 0 55814.0 111741.0 113842.0 706.0 787.0 1407.0 1302.0 0 0 0 0 0 t 0 0 0 22388.0 2676.0 2299.0 1342.0 118529.0 115588.0 3943.0 0 0 0 0 0

MA0629.2_rc_shift6 (Rhox11_rc)
; oligos_7nt_mkv2_m4 versus MA0629.2_rc (Rhox11_rc); m=3/12; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.527764; ------wTwACAGCr ; cor=; Ncor= a 0 0 0 0 0 0 36.0 15.0 43.0 99.0 2.0 99.0 0.0 1.0 25.0 c 0 0 0 0 0 0 1.0 3.0 0.0 0.0 94.0 1.0 15.0 95.0 6.0 g 0 0 0 0 0 0 10.0 4.0 0.0 1.0 0.0 0.0 76.0 1.0 56.0 t 0 0 0 0 0 0 52.0 78.0 56.0 1.0 4.0 1.0 9.0 3.0 13.0

MA0711.2_rc_shift4 (OTX1_rc)
; oligos_7nt_mkv2_m4 versus MA0711.2_rc (OTX1_rc); m=4/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.494715; ----gGATTA----- ; cor=; Ncor= a 0 0 0 0 3363.0 378.0 23441.0 0.0 544.0 23441.0 0 0 0 0 0 c 0 0 0 0 8662.0 659.0 3160.0 0.0 254.0 0.0 0 0 0 0 0 g 0 0 0 0 23441.0 23441.0 0.0 0.0 0.0 90.0 0 0 0 0 0 t 0 0 0 0 789.0 647.0 243.0 23441.0 23441.0 745.0 0 0 0 0 0

MA0467.3_shift4 (Crx)
; oligos_7nt_mkv2_m4 versus MA0467.3 (Crx); m=5/12; ncol2=6; w=0; offset=1; strand=D; shift=4; score=0.491146; ----GGATTA----- ; cor=; Ncor= a 0 0 0 0 19.0 26.0 4227.0 11.0 50.0 4241.0 0 0 0 0 0 c 0 0 0 0 155.0 36.0 17.0 32.0 25.0 25.0 0 0 0 0 0 g 0 0 0 0 4129.0 4200.0 42.0 9.0 20.0 23.0 0 0 0 0 0 t 0 0 0 0 30.0 71.0 47.0 4281.0 4238.0 44.0 0 0 0 0 0

MA0682.3_rc_shift4 (PITX1_rc)
; oligos_7nt_mkv2_m4 versus MA0682.3_rc (PITX1_rc); m=6/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.489626; ----GGATTA----- ; cor=; Ncor= a 0 0 0 0 547.0 141.0 10531.0 0.0 0.0 10531.0 0 0 0 0 0 c 0 0 0 0 134.0 0.0 1039.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 10531.0 10531.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 68.0 143.0 0.0 10531.0 10531.0 0.0 0 0 0 0 0

MA0648.2_rc_shift4 (GSC_rc)
; oligos_7nt_mkv2_m4 versus MA0648.2_rc (GSC_rc); m=7/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.489392; ----GGATTA----- ; cor=; Ncor= a 0 0 0 0 1099.0 787.0 6081.0 0.0 89.0 6081.0 0 0 0 0 0 c 0 0 0 0 828.0 452.0 144.0 0.0 176.0 0.0 0 0 0 0 0 g 0 0 0 0 6081.0 6081.0 25.0 0.0 71.0 54.0 0 0 0 0 0 t 0 0 0 0 315.0 416.0 0.0 6081.0 6081.0 0.0 0 0 0 0 0

MA0891.2_rc_shift4 (GSC2_rc)
; oligos_7nt_mkv2_m4 versus MA0891.2_rc (GSC2_rc); m=8/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.488928; ----gGATTA----- ; cor=; Ncor= a 0 0 0 0 439.0 204.0 2016.0 132.0 201.0 2016.0 0 0 0 0 0 c 0 0 0 0 422.0 179.0 145.0 0.0 56.0 0.0 0 0 0 0 0 g 0 0 0 0 2016.0 2016.0 41.0 11.0 87.0 0.0 0 0 0 0 0 t 0 0 0 0 182.0 255.0 0.0 2016.0 2016.0 116.0 0 0 0 0 0

MA0714.2_rc_shift4 (PITX3_rc)
; oligos_7nt_mkv2_m4 versus MA0714.2_rc (PITX3_rc); m=9/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.48766; ----GGATTA----- ; cor=; Ncor= a 0 0 0 0 968.0 236.0 6253.0 0.0 158.0 6253.0 0 0 0 0 0 c 0 0 0 0 239.0 166.0 1101.0 15.0 260.0 9.0 0 0 0 0 0 g 0 0 0 0 6253.0 6253.0 138.0 0.0 32.0 51.0 0 0 0 0 0 t 0 0 0 0 227.0 318.0 262.0 6253.0 6253.0 493.0 0 0 0 0 0

MA0719.2_rc_shift4 (RHOXF1_rc)
; oligos_7nt_mkv2_m4 versus MA0719.2_rc (RHOXF1_rc); m=10/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.44298; ----GGmTyA----- ; cor=; Ncor= a 0 0 0 0 2275.0 0.0 7376.0 0.0 1367.0 10916.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 3540.0 0.0 5373.0 478.0 0 0 0 0 0 g 0 0 0 0 10916.0 10916.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 10916.0 5543.0 2837.0 0 0 0 0 0

MA0883.2_shift0 (Dmbx1)
; oligos_7nt_mkv2_m4 versus MA0883.2 (Dmbx1); m=11/12; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.427826; rwmmGGATTA----- ; cor=; Ncor= a 49.0 49.0 25.0 28.0 6.0 0.0 94.0 0.0 1.0 97.0 0 0 0 0 0 c 8.0 8.0 36.0 50.0 1.0 1.0 6.0 0.0 1.0 0.0 0 0 0 0 0 g 31.0 13.0 18.0 20.0 93.0 99.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 12.0 30.0 21.0 3.0 0.0 0.0 0.0 99.0 98.0 3.0 0 0 0 0 0

MA0056.3_rc_shift1 (MZF1_rc)
; oligos_7nt_mkv2_m4 versus MA0056.3_rc (MZF1_rc); m=12/12; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.405882; -TGGGGATT------ ; cor=; Ncor= a 0 1111.0 369.0 154.0 114.0 93.0 7982.0 282.0 372.0 0 0 0 0 0 0 c 0 484.0 83.0 58.0 54.0 100.0 98.0 385.0 999.0 0 0 0 0 0 0 g 0 611.0 7673.0 7919.0 7939.0 7949.0 56.0 426.0 1016.0 0 0 0 0 0 0 t 0 6036.0 117.0 111.0 135.0 100.0 106.0 7149.0 5855.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; ykCTACTMArwr ; Alignment reference a 2 1 0 0 9 0 0 8 11 7 6 5 c 5 2 11 1 0 10 0 3 0 0 1 1 g 1 3 0 0 1 1 0 0 0 3 1 4 t 3 5 0 10 1 0 11 0 0 1 3 1

MA1645.2_shift2 (NKX2-2)
; oligos_7nt_mkv2_m5 versus MA1645.2 (NKX2-2); m=1/2; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.467383; --CCACTCAA-- ; cor=; Ncor= a 0 0 2438.0 618.0 23748.0 478.0 490.0 397.0 21326.0 20003.0 0 0 c 0 0 20232.0 24341.0 463.0 24693.0 452.0 24058.0 2772.0 2104.0 0 0 g 0 0 2293.0 176.0 257.0 420.0 295.0 838.0 580.0 2266.0 0 0 t 0 0 1060.0 888.0 1555.0 432.0 24786.0 730.0 1345.0 1650.0 0 0

MA1963.2_shift2 (SATB1)
; oligos_7nt_mkv2_m5 versus MA1963.2 (SATB1); m=2/2; ncol2=7; w=0; offset=2; strand=D; shift=2; score=0.457639; --CTAATAA--- ; cor=; Ncor= a 0 0 262.0 492.0 33670.0 32708.0 288.0 32009.0 30660.0 0 0 0 c 0 0 33122.0 195.0 164.0 115.0 128.0 485.0 881.0 0 0 0 g 0 0 140.0 37.0 221.0 120.0 123.0 889.0 1071.0 0 0 0 t 0 0 700.0 33500.0 169.0 1281.0 33685.0 841.0 1612.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift2 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=10; shift=2; ncol=12; --gsCCCGCChy ; Alignment reference a 0 0 6 4 0 0 0 0 0 0 8 3 c 0 0 5 12 32 32 32 0 32 31 14 14 g 0 0 14 10 0 0 0 32 0 1 2 3 t 0 0 7 6 0 0 0 0 0 0 8 12
MA0516.3_rc_shift3 (SP2_rc)				; oligos_6nt_mkv2_m2 versus MA0516.3_rc (SP2_rc); m=1/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.850553; ---cCCCGCCCC ; cor=; Ncor= a 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 c 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 g 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 t 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226
MA0599.1_shift2 (KLF5)				; oligos_6nt_mkv2_m2 versus MA0599.1 (KLF5); m=2/35; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.828583; --gCCMCrCCCh ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0
MA0742.2_rc_shift3 (KLF12_rc)				; oligos_6nt_mkv2_m2 versus MA0742.2_rc (KLF12_rc); m=3/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.802794; ---CCCCGCCCC ; cor=; Ncor= a 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948
MA0740.2_rc_shift3 (KLF14_rc)				; oligos_6nt_mkv2_m2 versus MA0740.2_rc (KLF14_rc); m=4/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.795472; ---CCMCGCCCm ; cor=; Ncor= a 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158
MA1511.2_rc_shift3 (KLF10_rc)				; oligos_6nt_mkv2_m2 versus MA1511.2_rc (KLF10_rc); m=5/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.782973; ---CCMCGCCCC ; cor=; Ncor= a 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427
MA1961.2_rc_shift2 (PATZ1_rc)				; oligos_6nt_mkv2_m2 versus MA1961.2_rc (PATZ1_rc); m=6/35; ncol2=11; w=0; offset=0; strand=R; shift=2; score=0.781741; --sCCCCkCCCC ; cor=; Ncor= a 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0
MA0685.2_rc_shift3 (SP4_rc)				; oligos_6nt_mkv2_m2 versus MA0685.2_rc (SP4_rc); m=7/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.767361; ---CyCCKCCCc ; cor=; Ncor= a 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 c 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 g 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 t 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038
MA0079.5_rc_shift3 (SP1_rc)				; oligos_6nt_mkv2_m2 versus MA0079.5_rc (SP1_rc); m=8/35; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.763754; ---CyCCKCCCC ; cor=; Ncor= a 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 c 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 g 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 t 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485
MA1513.2_shift3 (KLF15)				; oligos_6nt_mkv2_m2 versus MA1513.2 (KLF15); m=9/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.761312; ---cCCCGCCC- ; cor=; Ncor= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA0865.3_shift2 (E2F8)				; oligos_6nt_mkv2_m2 versus MA0865.3 (E2F8); m=10/35; ncol2=9; w=0; offset=0; strand=D; shift=2; score=0.743761; --tTCCCGCcA- ; cor=; Ncor= a 0 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 c 0 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 g 0 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 t 0 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0
MA0741.1_shift2 (KLF16)				; oligos_6nt_mkv2_m2 versus MA0741.1 (KLF16); m=11/35; ncol2=11; w=0; offset=0; strand=D; shift=2; score=0.707833; --gmCMCgCCCM ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0
MA0746.3_shift2 (SP3)				; oligos_6nt_mkv2_m2 versus MA0746.3 (SP3); m=12/35; ncol2=11; w=0; offset=0; strand=D; shift=2; score=0.705257; --rCCACGCCCm ; cor=; Ncor= a 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0
MA0471.3_rc_shift2 (E2F6_rc)				; oligos_6nt_mkv2_m2 versus MA0471.3_rc (E2F6_rc); m=13/35; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.689485; --TTCCCGCC-- ; cor=; Ncor= a 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 c 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 g 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 t 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0
MA1959.2_rc_shift3 (KLF7_rc)				; oligos_6nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=14/35; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.680604; ---CcMCGCCC- ; cor=; Ncor= a 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0
MA1564.2_shift3 (SP9)				; oligos_6nt_mkv2_m2 versus MA1564.2 (SP9); m=15/35; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.671594; ---cCmCGCCCm ; cor=; Ncor= a 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0
MA0493.3_rc_shift3 (KLF1_rc)				; oligos_6nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=16/35; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.665761; ---CCmCrCCC- ; cor=; Ncor= a 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0
MA1122.2_rc_shift2 (TFDP1_rc)				; oligos_6nt_mkv2_m2 versus MA1122.2_rc (TFDP1_rc); m=17/35; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.650422; --TTCCCGCs-- ; cor=; Ncor= a 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 c 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 g 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 t 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0
MA1517.2_shift3 (KLF6)				; oligos_6nt_mkv2_m2 versus MA1517.2 (KLF6); m=18/35; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.648773; ---cCACRCCCm ; cor=; Ncor= a 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0
MA1515.2_shift3 (KLF2)				; oligos_6nt_mkv2_m2 versus MA1515.2 (KLF2); m=19/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.640334; ---CCmCrCCC- ; cor=; Ncor= a 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0
MA1630.3_rc_shift3 (ZNF281_rc)				; oligos_6nt_mkv2_m2 versus MA1630.3_rc (ZNF281_rc); m=20/35; ncol2=10; w=0; offset=1; strand=R; shift=3; score=0.616553; ---CCCCTCCCC ; cor=; Ncor= a 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 c 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 g 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 t 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0
MA1653.2_shift3 (ZNF148)				; oligos_6nt_mkv2_m2 versus MA1653.2 (ZNF148); m=21/35; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.610477; ---CCCCTCCCc ; cor=; Ncor= a 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 c 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 g 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 t 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0
MA1512.2_shift3 (KLF11)				; oligos_6nt_mkv2_m2 versus MA1512.2 (KLF11); m=22/35; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.610277; ---cCACGCCCm ; cor=; Ncor= a 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0
MA1516.2_shift1 (KLF3)				; oligos_6nt_mkv2_m2 versus MA1516.2 (KLF3); m=23/35; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.607266; -grCCrCGCCC- ; cor=; Ncor= a 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0
MA0039.5_shift3 (KLF4)				; oligos_6nt_mkv2_m2 versus MA0039.5 (KLF4); m=24/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.59962; ---CCCCACCC- ; cor=; Ncor= a 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 c 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 g 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 t 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0
MA0748.3_rc_shift5 (YY2_rc)				; oligos_6nt_mkv2_m2 versus MA0748.3_rc (YY2_rc); m=25/35; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.593955; -----CCGCCAT ; cor=; Ncor= a 0 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 c 0 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 g 0 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 t 0 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0
MA1522.2_shift3 (MAZ)				; oligos_6nt_mkv2_m2 versus MA1522.2 (MAZ); m=26/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.591397; ---CCCCTCCc- ; cor=; Ncor= a 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 c 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 g 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 t 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0
MA2328.1_shift4 (ZBED4)				; oligos_6nt_mkv2_m2 versus MA2328.1 (ZBED4); m=27/35; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.565818; ----CcCGCyCC ; cor=; Ncor= a 0 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 c 0 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 g 0 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 t 0 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0
MA2341.1_shift3 (FEZF2)				; oligos_6nt_mkv2_m2 versus MA2341.1 (FEZF2); m=28/35; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.562868; ---CCCAGCCT- ; cor=; Ncor= a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0 0
MA0747.2_shift3 (SP8)				; oligos_6nt_mkv2_m2 versus MA0747.2 (SP8); m=29/35; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.545156; ---mCACgCCCm ; cor=; Ncor= a 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0
MA0758.1_shift0 (E2F7)				; oligos_6nt_mkv2_m2 versus MA0758.1 (E2F7); m=30/35; ncol2=14; w=-2; offset=-2; strand=D; shift=0; score=0.50767; tTTTCCCGCCAA ; cor=; Ncor= a 222.0 38.0 0.0 0.0 0.0 0.0 0.0 2.0 0.0 0.0 912.0 930.0 c 72.0 7.0 3.0 1.0 960.0 961.0 965.0 1.0 986.0 977.0 0.0 1.0 g 182.0 18.0 0.0 0.0 2.0 10.0 0.0 995.0 0.0 17.0 0.0 3.0 t 577.0 891.0 963.0 957.0 0.0 0.0 0.0 0.0 0.0 1.0 5.0 6.0
MA0753.3_shift4 (ZNF740)				; oligos_6nt_mkv2_m2 versus MA0753.3 (ZNF740); m=31/35; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.479537; ----CCCCCCCC ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0
MA1578.2_shift4 (VEZF1)				; oligos_6nt_mkv2_m2 versus MA1578.2 (VEZF1); m=32/35; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.454931; ----CCCCCC-- ; cor=; Ncor= a 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 c 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 g 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 t 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0
MA1965.2_shift5 (SP5)				; oligos_6nt_mkv2_m2 versus MA1965.2 (SP5); m=33/35; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.425085; -----CCTCCC- ; cor=; Ncor= a 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 c 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 g 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 t 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0
MA0657.2_shift1 (KLF13)				; oligos_6nt_mkv2_m2 versus MA0657.2 (KLF13); m=34/35; ncol2=17; w=-1; offset=-1; strand=D; shift=1; score=0.421152; -tRmCACGCCCC ; cor=; Ncor= a 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 c 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 g 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 t 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0
MA0162.5_shift5 (EGR1)				; oligos_6nt_mkv2_m2 versus MA0162.5 (EGR1); m=35/35; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.405046; -----mCGCCCA ; cor=; Ncor= a 0 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 c 0 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 g 0 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 t 0 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m1_shift3 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---gkCGGGGCyr ; Alignment reference a 0 0 0 3 1 0 0 0 0 0 0 2 8 c 0 0 0 6 7 32 0 0 2 0 31 17 5 g 0 0 0 16 16 0 32 31 30 32 0 5 15 t 0 0 0 7 8 0 0 1 0 0 1 8 4
MA2328.1_rc_shift4 (ZBED4_rc)				; oligos_6nt_mkv2_m1 versus MA2328.1_rc (ZBED4_rc); m=1/27; ncol2=10; w=0; offset=1; strand=R; shift=4; score=0.704214; ----GCGGrGCGg ; cor=; Ncor= a 0 0 0 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 c 0 0 0 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 g 0 0 0 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 t 0 0 0 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0
MA1615.2_shift5 (Plagl1)				; oligos_6nt_mkv2_m1 versus MA1615.2 (Plagl1); m=2/27; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.612582; -----tGGGGCCA ; cor=; Ncor= a 0 0 0 0 0 1919.0 197.0 1213.0 187.0 180.0 782.0 181.0 12064.0 c 0 0 0 0 0 1471.0 243.0 356.0 266.0 336.0 12737.0 13152.0 686.0 g 0 0 0 0 0 1338.0 13595.0 12261.0 13517.0 13495.0 313.0 422.0 1032.0 t 0 0 0 0 0 9425.0 118.0 323.0 183.0 142.0 321.0 398.0 371.0
MA1516.2_rc_shift2 (KLF3_rc)				; oligos_6nt_mkv2_m1 versus MA1516.2_rc (KLF3_rc); m=3/27; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.575649; --GGGCGyGGyc- ; cor=; Ncor= a 0 0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 705.0 207.0 6319.0 0 c 0 0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 1954.0 18489.0 26568.0 0 g 0 0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 43259.0 615.0 2655.0 0 t 0 0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0 1442.0 24771.0 7717.0 0
MA1548.2_rc_shift5 (PLAGL2_rc)				; oligos_6nt_mkv2_m1 versus MA1548.2_rc (PLAGL2_rc); m=4/27; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.570542; -----GGGGGCCC ; cor=; Ncor= a 0 0 0 0 0 198.0 74.0 0.0 0.0 0.0 0.0 0.0 107.0 c 0 0 0 0 0 25.0 0.0 0.0 0.0 200.0 848.0 999.0 813.0 g 0 0 0 0 0 684.0 925.0 999.0 999.0 799.0 151.0 0.0 39.0 t 0 0 0 0 0 90.0 0.0 0.0 0.0 0.0 0.0 0.0 39.0
MA1513.2_rc_shift2 (KLF15_rc)				; oligos_6nt_mkv2_m1 versus MA1513.2_rc (KLF15_rc); m=5/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.56826; --GGGCGGGg--- ; cor=; Ncor= a 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 c 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 g 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 t 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0
MA1959.2_shift2 (KLF7)				; oligos_6nt_mkv2_m1 versus MA1959.2 (KLF7); m=6/27; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.552075; --GGGCGKgG--- ; cor=; Ncor= a 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 c 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 g 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 t 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0
MA0493.3_shift2 (KLF1)				; oligos_6nt_mkv2_m1 versus MA0493.3 (KLF1); m=7/27; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.535457; --GGGyGkGG--- ; cor=; Ncor= a 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 c 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 g 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 t 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0
MA0599.1_rc_shift1 (KLF5_rc)				; oligos_6nt_mkv2_m1 versus MA0599.1_rc (KLF5_rc); m=8/27; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.532319; -dGGGyGKGGc-- ; cor=; Ncor= a 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 c 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 g 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 t 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0
MA0742.2_shift1 (KLF12)				; oligos_6nt_mkv2_m1 versus MA0742.2 (KLF12); m=9/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.529022; -GGGGCGGGG--- ; cor=; Ncor= a 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 c 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 g 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 t 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0
MA1511.2_shift1 (KLF10)				; oligos_6nt_mkv2_m1 versus MA1511.2 (KLF10); m=10/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.515419; -GGGGCGKGG--- ; cor=; Ncor= a 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 c 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 g 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 t 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0
MA0516.3_shift1 (SP2)				; oligos_6nt_mkv2_m1 versus MA0516.3 (SP2); m=11/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.513529; -GGGGCGGGg--- ; cor=; Ncor= a 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 c 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 g 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 t 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0
MA0685.2_shift1 (SP4)				; oligos_6nt_mkv2_m1 versus MA0685.2 (SP4); m=12/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.50945; -gGGGMGGrG--- ; cor=; Ncor= a 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 c 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 g 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 t 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0
MA0740.2_shift1 (KLF14)				; oligos_6nt_mkv2_m1 versus MA0740.2 (KLF14); m=13/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.507177; -kGGGCGKGG--- ; cor=; Ncor= a 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 c 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 g 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 t 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0
MA0079.5_shift1 (SP1)				; oligos_6nt_mkv2_m1 versus MA0079.5 (SP1); m=14/27; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.503978; -GGGGMGGrG--- ; cor=; Ncor= a 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 c 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 g 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 t 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0
MA1961.2_shift0 (PATZ1)				; oligos_6nt_mkv2_m1 versus MA1961.2 (PATZ1); m=15/27; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.497545; sGGGGmGGGGs-- ; cor=; Ncor= a 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 0 c 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 0 g 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 0 t 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0 0
MA1712.2_rc_shift2 (ZNF454_rc)				; oligos_6nt_mkv2_m1 versus MA1712.2_rc (ZNF454_rc); m=16/27; ncol2=17; w=-1; offset=-1; strand=R; shift=2; score=0.480094; --CmbmrGGgCCs ; cor=; Ncor= a 0 0 32.0 340.0 32.0 263.0 417.0 83.0 135.0 135.0 6.0 6.0 135.0 c 0 0 699.0 391.0 417.0 596.0 58.0 6.0 32.0 160.0 981.0 853.0 391.0 g 0 0 160.0 160.0 288.0 83.0 519.0 776.0 724.0 571.0 6.0 32.0 314.0 t 0 0 109.0 109.0 263.0 58.0 6.0 135.0 109.0 135.0 6.0 109.0 160.0
MA1515.2_rc_shift2 (KLF2_rc)				; oligos_6nt_mkv2_m1 versus MA1515.2_rc (KLF2_rc); m=17/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.475523; --GGGyGkGG--- ; cor=; Ncor= a 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 346.0 0 0 0 c 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 495.0 0 0 0 g 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 4622.0 0 0 0 t 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0 741.0 0 0 0
MA0746.3_rc_shift0 (SP3_rc)				; oligos_6nt_mkv2_m1 versus MA0746.3_rc (SP3_rc); m=18/27; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.467221; GkGGGCGTGGy-- ; cor=; Ncor= a 1475.0 552.0 718.0 9.0 0.0 504.0 12.0 11.0 202.0 345.0 421.0 0 0 c 297.0 39.0 2.0 0.0 0.0 6591.0 0.0 2.0 54.0 226.0 4445.0 0 0 g 5116.0 3160.0 6591.0 6591.0 6591.0 0.0 6591.0 1338.0 6591.0 6591.0 531.0 0 0 t 556.0 3430.0 2.0 0.0 0.0 465.0 6.0 5253.0 160.0 664.0 2146.0 0 0
MA0039.5_rc_shift2 (KLF4_rc)				; oligos_6nt_mkv2_m1 versus MA0039.5_rc (KLF4_rc); m=19/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.463726; --GGGTGGGG--- ; cor=; Ncor= a 0 0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 0 0 0 c 0 0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 0 0 0 g 0 0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 0 0 0 t 0 0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 0 0 0
MA1522.2_rc_shift2 (MAZ_rc)				; oligos_6nt_mkv2_m1 versus MA1522.2_rc (MAZ_rc); m=20/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.449493; --gGGAGGGG--- ; cor=; Ncor= a 0 0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 0 0 0 c 0 0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 0 0 0 g 0 0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 0 0 0 t 0 0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 0 0 0
MA2341.1_rc_shift2 (FEZF2_rc)				; oligos_6nt_mkv2_m1 versus MA2341.1_rc (FEZF2_rc); m=21/27; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.446225; --AGGCTGGG--- ; cor=; Ncor= a 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 0 0 0 c 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 0 0 0 g 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 0 0 0 t 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0 0 0 0
MA0741.1_rc_shift0 (KLF16_rc)				; oligos_6nt_mkv2_m1 versus MA0741.1_rc (KLF16_rc); m=22/27; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.435463; GKGGGcGKGkc-- ; cor=; Ncor= a 370.0 40.0 97.0 0.0 0.0 403.0 19.0 0.0 45.0 116.0 240.0 0 0 c 23.0 19.0 3.0 8.0 0.0 1612.0 17.0 32.0 6.0 77.0 1612.0 0 0 g 1612.0 1175.0 1612.0 1612.0 1612.0 173.0 1612.0 461.0 1612.0 1612.0 535.0 0 0 t 32.0 437.0 16.0 2.0 8.0 497.0 66.0 1150.0 62.0 901.0 666.0 0 0
MA0738.2_rc_shift7 (HIC2_rc)				; oligos_6nt_mkv2_m1 versus MA0738.2_rc (HIC2_rc); m=23/27; ncol2=6; w=0; offset=4; strand=R; shift=7; score=0.422084; -------KGGCAy ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 59.0 0.0 151.0 4891.0 367.0 c 0 0 0 0 0 0 0 0.0 0.0 14.0 4891.0 0.0 2285.0 g 0 0 0 0 0 0 0 3425.0 4891.0 4891.0 354.0 117.0 394.0 t 0 0 0 0 0 0 0 1466.0 435.0 23.0 494.0 0.0 2606.0
MA1564.2_rc_shift0 (SP9_rc)				; oligos_6nt_mkv2_m1 versus MA1564.2_rc (SP9_rc); m=24/27; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.405955; gkGGGCGkGg--- ; cor=; Ncor= a 588.0 353.0 412.0 30.0 14.0 173.0 9.0 96.0 284.0 518.0 0 0 0 c 191.0 38.0 24.0 0.0 0.0 2451.0 17.0 56.0 113.0 309.0 0 0 0 g 1863.0 1259.0 2451.0 2451.0 2451.0 200.0 2451.0 1127.0 2451.0 2451.0 0 0 0 t 188.0 1192.0 39.0 0.0 22.0 211.0 2.0 2451.0 321.0 566.0 0 0 0
MA1630.3_shift0 (ZNF281)				; oligos_6nt_mkv2_m1 versus MA1630.3 (ZNF281); m=25/27; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.404004; GGGGGAGGGG--- ; cor=; Ncor= a 1.0 1.0 35.0 1.0 1.0 720.0 122.0 1.0 41.0 47.0 0 0 0 c 1.0 1.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 27.0 0 0 0 g 998.0 998.0 963.0 998.0 998.0 1.0 772.0 998.0 940.0 920.0 0 0 0 t 1.0 1.0 1.0 1.0 1.0 96.0 105.0 1.0 18.0 7.0 0 0 0
MA1599.2_rc_shift6 (ZNF682_rc)				; oligos_6nt_mkv2_m1 versus MA1599.2_rc (ZNF682_rc); m=26/27; ncol2=11; w=0; offset=3; strand=R; shift=6; score=0.400998; ------GGGGCTT ; cor=; Ncor= a 0 0 0 0 0 0 64.0 7.0 11.0 33.0 7.0 6.0 13.0 c 0 0 0 0 0 0 32.0 10.0 9.0 13.0 1038.0 22.0 20.0 g 0 0 0 0 0 0 896.0 1034.0 1033.0 999.0 7.0 31.0 72.0 t 0 0 0 0 0 0 66.0 7.0 5.0 13.0 6.0 999.0 953.0
MA1986.2_shift7 (ZNF692)				; oligos_6nt_mkv2_m1 versus MA1986.2 (ZNF692); m=27/27; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.400129; -------gGGCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1403.0 0.0 31.0 27.0 41.0 3.0 c 0 0 0 0 0 0 0 1314.0 90.0 4.0 10689.0 10446.0 10545.0 g 0 0 0 0 0 0 0 6833.0 10642.0 10684.0 7.0 241.0 176.0 t 0 0 0 0 0 0 0 1195.0 13.0 26.0 22.0 17.0 21.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift3 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ggGCGGGGCCrg ; Alignment reference a 0 0 0 5 3 1 1 0 2 0 0 0 0 10 9 c 0 0 0 8 7 4 38 4 1 1 2 35 34 6 7 g 0 0 0 23 22 32 0 35 35 38 35 1 3 14 19 t 0 0 0 3 7 2 0 0 1 0 2 3 2 9 4
MA2328.1_rc_shift5 (ZBED4_rc)				; oligos_7nt_mkv2_m1 versus MA2328.1_rc (ZBED4_rc); m=1/32; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.684341; -----GCGGrGCGgG ; cor=; Ncor= a 0 0 0 0 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 60.0 c 0 0 0 0 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 80.0 g 0 0 0 0 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 479.0 t 0 0 0 0 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0 41.0
MA1516.2_rc_shift3 (KLF3_rc)				; oligos_7nt_mkv2_m1 versus MA1516.2_rc (KLF3_rc); m=2/32; ncol2=10; w=0; offset=0; strand=R; shift=3; score=0.642965; ---GGGCGyGGyc-- ; cor=; Ncor= a 0 0 0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 705.0 207.0 6319.0 0 0 c 0 0 0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 1954.0 18489.0 26568.0 0 0 g 0 0 0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 43259.0 615.0 2655.0 0 0 t 0 0 0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0 1442.0 24771.0 7717.0 0 0
MA1513.2_rc_shift3 (KLF15_rc)				; oligos_7nt_mkv2_m1 versus MA1513.2_rc (KLF15_rc); m=3/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.624968; ---GGGCGGGg---- ; cor=; Ncor= a 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 0 c 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 0 g 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 0 t 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0 0
MA0146.3_shift4 (Zfx)				; oligos_7nt_mkv2_m1 versus MA0146.3 (Zfx); m=4/32; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.608417; ----gsCbvGGCCT- ; cor=; Ncor= a 0 0 0 0 72.0 10.0 6.0 30.0 191.0 8.0 0.0 0.0 0.0 0.0 0 c 0 0 0 0 49.0 297.0 361.0 124.0 153.0 2.0 3.0 481.0 480.0 1.0 0 g 0 0 0 0 297.0 144.0 2.0 183.0 122.0 470.0 477.0 0.0 0.0 0.0 0 t 0 0 0 0 61.0 30.0 112.0 144.0 15.0 1.0 1.0 0.0 1.0 480.0 0
MA1959.2_shift3 (KLF7)				; oligos_7nt_mkv2_m1 versus MA1959.2 (KLF7); m=5/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.600772; ---GGGCGKgG---- ; cor=; Ncor= a 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 0 c 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 0 g 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 0 t 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0 0
MA0493.3_shift3 (KLF1)				; oligos_7nt_mkv2_m1 versus MA0493.3 (KLF1); m=6/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.588534; ---GGGyGkGG---- ; cor=; Ncor= a 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 0 c 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 0 g 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 0 t 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0 0
MA0599.1_rc_shift2 (KLF5_rc)				; oligos_7nt_mkv2_m1 versus MA0599.1_rc (KLF5_rc); m=7/32; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.586203; --dGGGyGKGGc--- ; cor=; Ncor= a 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 0 c 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 0 g 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 0 t 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0 0
MA0742.2_shift2 (KLF12)				; oligos_7nt_mkv2_m1 versus MA0742.2 (KLF12); m=8/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.583283; --GGGGCGGGG---- ; cor=; Ncor= a 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 0 c 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 0 g 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 0 t 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0 0
MA0516.3_shift2 (SP2)				; oligos_7nt_mkv2_m1 versus MA0516.3 (SP2); m=9/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.573585; --GGGGCGGGg---- ; cor=; Ncor= a 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 0 c 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 0 g 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 0 t 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0 0
MA1511.2_shift2 (KLF10)				; oligos_7nt_mkv2_m1 versus MA1511.2 (KLF10); m=10/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.56787; --GGGGCGKGG---- ; cor=; Ncor= a 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 0 c 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 0 g 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 0 t 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0 0
MA0740.2_shift2 (KLF14)				; oligos_7nt_mkv2_m1 versus MA0740.2 (KLF14); m=11/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.561463; --kGGGCGKGG---- ; cor=; Ncor= a 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 0 c 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 0 g 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 0 t 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0 0
MA0685.2_shift2 (SP4)				; oligos_7nt_mkv2_m1 versus MA0685.2 (SP4); m=12/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.557873; --gGGGMGGrG---- ; cor=; Ncor= a 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 0 c 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 g 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 0 t 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0 0
MA1961.2_shift1 (PATZ1)				; oligos_7nt_mkv2_m1 versus MA1961.2 (PATZ1); m=13/32; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.556099; -sGGGGmGGGGs--- ; cor=; Ncor= a 0 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 0 0 c 0 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 0 0 g 0 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 0 0 t 0 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0 0 0
MA0079.5_shift2 (SP1)				; oligos_7nt_mkv2_m1 versus MA0079.5 (SP1); m=14/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.554425; --GGGGMGGrG---- ; cor=; Ncor= a 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 0 c 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 0 g 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 0 t 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0 0
MA1515.2_rc_shift3 (KLF2_rc)				; oligos_7nt_mkv2_m1 versus MA1515.2_rc (KLF2_rc); m=15/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.544427; ---GGGyGkGG---- ; cor=; Ncor= a 0 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 346.0 0 0 0 0 c 0 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 495.0 0 0 0 0 g 0 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 4622.0 0 0 0 0 t 0 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0 741.0 0 0 0 0
MA1712.2_rc_shift3 (ZNF454_rc)				; oligos_7nt_mkv2_m1 versus MA1712.2_rc (ZNF454_rc); m=16/32; ncol2=17; w=0; offset=0; strand=R; shift=3; score=0.542716; ---CmbmrGGgCCss ; cor=; Ncor= a 0 0 0 32.0 340.0 32.0 263.0 417.0 83.0 135.0 135.0 6.0 6.0 135.0 186.0 c 0 0 0 699.0 391.0 417.0 596.0 58.0 6.0 32.0 160.0 981.0 853.0 391.0 263.0 g 0 0 0 160.0 160.0 288.0 83.0 519.0 776.0 724.0 571.0 6.0 32.0 314.0 468.0 t 0 0 0 109.0 109.0 263.0 58.0 6.0 135.0 109.0 135.0 6.0 109.0 160.0 83.0
MA1615.2_shift6 (Plagl1)				; oligos_7nt_mkv2_m1 versus MA1615.2 (Plagl1); m=17/32; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.531419; ------tGGGGCCA- ; cor=; Ncor= a 0 0 0 0 0 0 1919.0 197.0 1213.0 187.0 180.0 782.0 181.0 12064.0 0 c 0 0 0 0 0 0 1471.0 243.0 356.0 266.0 336.0 12737.0 13152.0 686.0 0 g 0 0 0 0 0 0 1338.0 13595.0 12261.0 13517.0 13495.0 313.0 422.0 1032.0 0 t 0 0 0 0 0 0 9425.0 118.0 323.0 183.0 142.0 321.0 398.0 371.0 0
MA0746.3_rc_shift1 (SP3_rc)				; oligos_7nt_mkv2_m1 versus MA0746.3_rc (SP3_rc); m=18/32; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.527058; -GkGGGCGTGGy--- ; cor=; Ncor= a 0 1475.0 552.0 718.0 9.0 0.0 504.0 12.0 11.0 202.0 345.0 421.0 0 0 0 c 0 297.0 39.0 2.0 0.0 0.0 6591.0 0.0 2.0 54.0 226.0 4445.0 0 0 0 g 0 5116.0 3160.0 6591.0 6591.0 6591.0 0.0 6591.0 1338.0 6591.0 6591.0 531.0 0 0 0 t 0 556.0 3430.0 2.0 0.0 0.0 465.0 6.0 5253.0 160.0 664.0 2146.0 0 0 0
MA0039.5_rc_shift3 (KLF4_rc)				; oligos_7nt_mkv2_m1 versus MA0039.5_rc (KLF4_rc); m=19/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.521203; ---GGGTGGGG---- ; cor=; Ncor= a 0 0 0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 2560.0 0 0 0 0 c 0 0 0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 1583.0 0 0 0 0 g 0 0 0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 49209.0 0 0 0 0 t 0 0 0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0 2465.0 0 0 0 0
MA1522.2_rc_shift3 (MAZ_rc)				; oligos_7nt_mkv2_m1 versus MA1522.2_rc (MAZ_rc); m=20/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.510409; ---gGGAGGGG---- ; cor=; Ncor= a 0 0 0 2814.0 0.0 4.0 14927.0 1.0 6.0 0.0 26.0 0 0 0 0 c 0 0 0 1768.0 96.0 8.0 130.0 347.0 290.0 384.0 75.0 0 0 0 0 g 0 0 0 9372.0 14944.0 14961.0 0.0 14676.0 14731.0 14630.0 14945.0 0 0 0 0 t 0 0 0 1109.0 23.0 90.0 6.0 39.0 36.0 49.0 17.0 0 0 0 0
MA1548.2_rc_shift6 (PLAGL2_rc)				; oligos_7nt_mkv2_m1 versus MA1548.2_rc (PLAGL2_rc); m=21/32; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.503672; ------GGGGGCCC- ; cor=; Ncor= a 0 0 0 0 0 0 198.0 74.0 0.0 0.0 0.0 0.0 0.0 107.0 0 c 0 0 0 0 0 0 25.0 0.0 0.0 0.0 200.0 848.0 999.0 813.0 0 g 0 0 0 0 0 0 684.0 925.0 999.0 999.0 799.0 151.0 0.0 39.0 0 t 0 0 0 0 0 0 90.0 0.0 0.0 0.0 0.0 0.0 0.0 39.0 0
MA0741.1_rc_shift1 (KLF16_rc)				; oligos_7nt_mkv2_m1 versus MA0741.1_rc (KLF16_rc); m=22/32; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.502663; -GKGGGcGKGkc--- ; cor=; Ncor= a 0 370.0 40.0 97.0 0.0 0.0 403.0 19.0 0.0 45.0 116.0 240.0 0 0 0 c 0 23.0 19.0 3.0 8.0 0.0 1612.0 17.0 32.0 6.0 77.0 1612.0 0 0 0 g 0 1612.0 1175.0 1612.0 1612.0 1612.0 173.0 1612.0 461.0 1612.0 1612.0 535.0 0 0 0 t 0 32.0 437.0 16.0 2.0 8.0 497.0 66.0 1150.0 62.0 901.0 666.0 0 0 0
MA1564.2_rc_shift1 (SP9_rc)				; oligos_7nt_mkv2_m1 versus MA1564.2_rc (SP9_rc); m=23/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.471176; -gkGGGCGkGg---- ; cor=; Ncor= a 0 588.0 353.0 412.0 30.0 14.0 173.0 9.0 96.0 284.0 518.0 0 0 0 0 c 0 191.0 38.0 24.0 0.0 0.0 2451.0 17.0 56.0 113.0 309.0 0 0 0 0 g 0 1863.0 1259.0 2451.0 2451.0 2451.0 200.0 2451.0 1127.0 2451.0 2451.0 0 0 0 0 t 0 188.0 1192.0 39.0 0.0 22.0 211.0 2.0 2451.0 321.0 566.0 0 0 0 0
MA1630.3_shift1 (ZNF281)				; oligos_7nt_mkv2_m1 versus MA1630.3 (ZNF281); m=24/32; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.462974; -GGGGGAGGGG---- ; cor=; Ncor= a 0 1.0 1.0 35.0 1.0 1.0 720.0 122.0 1.0 41.0 47.0 0 0 0 0 c 0 1.0 1.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 27.0 0 0 0 0 g 0 998.0 998.0 963.0 998.0 998.0 1.0 772.0 998.0 940.0 920.0 0 0 0 0 t 0 1.0 1.0 1.0 1.0 1.0 96.0 105.0 1.0 18.0 7.0 0 0 0 0
MA1653.2_rc_shift1 (ZNF148_rc)				; oligos_7nt_mkv2_m1 versus MA1653.2_rc (ZNF148_rc); m=25/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.454083; -ggGGGAGGGG---- ; cor=; Ncor= a 0 1180.0 1190.0 1082.0 465.0 67.0 10040.0 66.0 136.0 200.0 113.0 0 0 0 0 c 0 2064.0 1924.0 392.0 460.0 112.0 1012.0 211.0 401.0 471.0 205.0 0 0 0 0 g 0 7114.0 7239.0 9283.0 9922.0 10954.0 14.0 10833.0 10526.0 10396.0 10799.0 0 0 0 0 t 0 841.0 846.0 442.0 352.0 66.0 133.0 89.0 136.0 132.0 82.0 0 0 0 0
MA1517.2_rc_shift2 (KLF6_rc)				; oligos_7nt_mkv2_m1 versus MA1517.2_rc (KLF6_rc); m=26/32; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.45224; --kGGGYGTGg---- ; cor=; Ncor= a 0 0 520.0 64.0 0.0 0.0 0.0 24.0 60.0 140.0 219.0 0 0 0 0 c 0 0 52.0 12.0 60.0 0.0 2192.0 0.0 60.0 298.0 332.0 0 0 0 0 g 0 0 665.0 2192.0 2192.0 2192.0 0.0 2192.0 284.0 2192.0 2192.0 0 0 0 0 t 0 0 955.0 71.0 25.0 0.0 1024.0 0.0 2192.0 432.0 569.0 0 0 0 0
MA1512.2_rc_shift1 (KLF11_rc)				; oligos_7nt_mkv2_m1 versus MA1512.2_rc (KLF11_rc); m=27/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.43215; -GkGGGCGTGg---- ; cor=; Ncor= a 0 1281.0 761.0 885.0 7.0 23.0 349.0 38.0 27.0 506.0 1192.0 0 0 0 0 c 0 358.0 69.0 4.0 20.0 18.0 8291.0 0.0 115.0 156.0 401.0 0 0 0 0 g 0 8403.0 4226.0 8941.0 9166.0 9161.0 52.0 9142.0 1289.0 8662.0 5549.0 0 0 0 0 t 0 581.0 4689.0 0.0 1.0 11.0 2426.0 0.0 8655.0 650.0 2022.0 0 0 0 0
MA0753.3_rc_shift1 (ZNF740_rc)				; oligos_7nt_mkv2_m1 versus MA0753.3_rc (ZNF740_rc); m=28/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.425708; -gTGGGGGGGG---- ; cor=; Ncor= a 0 246.0 134.0 4.0 3.0 6.0 11.0 15.0 16.0 1.0 49.0 0 0 0 0 c 0 54.0 68.0 6.0 3.0 7.0 3.0 7.0 4.0 14.0 37.0 0 0 0 0 g 0 1055.0 239.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 0 0 0 0 t 0 207.0 1055.0 115.0 2.0 10.0 23.0 22.0 18.0 110.0 60.0 0 0 0 0
MA1986.2_shift8 (ZNF692)				; oligos_7nt_mkv2_m1 versus MA1986.2 (ZNF692); m=29/32; ncol2=8; w=0; offset=5; strand=D; shift=8; score=0.412541; --------gGGCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 c 0 0 0 0 0 0 0 0 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 g 0 0 0 0 0 0 0 0 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 t 0 0 0 0 0 0 0 0 1195.0 13.0 26.0 22.0 17.0 21.0 0.0
MA1727.2_shift7 (ZNF417)				; oligos_7nt_mkv2_m1 versus MA1727.2 (ZNF417); m=30/32; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.411255; -------GGCGCCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.0 1.0 7.0 1.0 1.0 31.0 984.0 0 c 0 0 0 0 0 0 0 1.0 1.0 936.0 1.0 990.0 954.0 13.0 0 g 0 0 0 0 0 0 0 996.0 996.0 1.0 996.0 1.0 1.0 1.0 0 t 0 0 0 0 0 0 0 1.0 1.0 55.0 1.0 7.0 13.0 1.0 0
MA0747.2_rc_shift0 (SP8_rc)				; oligos_7nt_mkv2_m1 versus MA0747.2_rc (SP8_rc); m=31/32; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.406889; rGkGGGcGTGk---- ; cor=; Ncor= a 82.0 39.0 3.0 15.0 0.0 2.0 39.0 5.0 2.0 13.0 4.0 0 0 0 0 c 1.0 21.0 6.0 4.0 3.0 6.0 167.0 1.0 1.0 0.0 0.0 0 0 0 0 g 52.0 167.0 77.0 167.0 167.0 167.0 37.0 167.0 33.0 167.0 113.0 0 0 0 0 t 31.0 13.0 90.0 0.0 2.0 5.0 25.0 7.0 133.0 25.0 54.0 0 0 0 0
MA2330.1_rc_shift7 (ZBTB24_rc)				; oligos_7nt_mkv2_m1 versus MA2330.1_rc (ZBTB24_rc); m=32/32; ncol2=10; w=0; offset=4; strand=R; shift=7; score= 0.4063; -------gGGTCCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 134.0 55.0 33.0 72.0 35.0 30.0 46.0 26.0 c 0 0 0 0 0 0 0 74.0 48.0 49.0 57.0 677.0 738.0 62.0 24.0 g 0 0 0 0 0 0 0 557.0 641.0 705.0 70.0 67.0 35.0 53.0 750.0 t 0 0 0 0 0 0 0 63.0 84.0 41.0 629.0 49.0 25.0 667.0 28.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift6 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=11; shift=6; ncol=17; ------ykCCTCCCGrs ; Alignment reference a 0 0 0 0 0 0 3 1 1 0 1 0 1 0 0 8 4 c 0 0 0 0 0 0 7 4 19 19 0 21 19 21 0 3 8 g 0 0 0 0 0 0 5 9 1 2 0 0 0 0 21 8 7 t 0 0 0 0 0 0 6 7 0 0 20 0 1 0 0 2 2
MA1653.2_shift6 (ZNF148)				; oligos_7nt_mkv2_m2 versus MA1653.2 (ZNF148); m=1/15; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.648718; ------CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA1596.1_shift1 (ZNF460)				; oligos_7nt_mkv2_m2 versus MA1596.1 (ZNF460); m=2/15; ncol2=16; w=-5; offset=-5; strand=D; shift=1; score=0.609225; -rCCTCmGCCTCCCrrG ; cor=; Ncor= a 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0
MA1522.2_shift6 (MAZ)				; oligos_7nt_mkv2_m2 versus MA1522.2 (MAZ); m=3/15; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.598154; ------CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA0528.3_rc_shift7 (ZNF263_rc)				; oligos_7nt_mkv2_m2 versus MA0528.3_rc (ZNF263_rc); m=4/15; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.593763; -------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0
MA1965.2_shift8 (SP5)				; oligos_7nt_mkv2_m2 versus MA1965.2 (SP5); m=5/15; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.54387; --------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0
MA1122.2_rc_shift9 (TFDP1_rc)				; oligos_7nt_mkv2_m2 versus MA1122.2_rc (TFDP1_rc); m=6/15; ncol2=8; w=0; offset=3; strand=R; shift=9; score=0.531972; ---------TTCCCGCs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 c 0 0 0 0 0 0 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 g 0 0 0 0 0 0 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 t 0 0 0 0 0 0 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0
MA0493.3_rc_shift6 (KLF1_rc)				; oligos_7nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=7/15; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.516507; ------CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA1959.2_rc_shift6 (KLF7_rc)				; oligos_7nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=8/15; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.513414; ------CcMCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA0471.3_rc_shift9 (E2F6_rc)				; oligos_7nt_mkv2_m2 versus MA0471.3_rc (E2F6_rc); m=9/15; ncol2=8; w=0; offset=3; strand=R; shift=9; score=0.511072; ---------TTCCCGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 c 0 0 0 0 0 0 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 g 0 0 0 0 0 0 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 t 0 0 0 0 0 0 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0
MA1587.1_shift2 (ZNF135)				; oligos_7nt_mkv2_m2 versus MA1587.1 (ZNF135); m=10/15; ncol2=14; w=-4; offset=-4; strand=D; shift=2; score=0.488082; --cCTCGACCTCCyrr- ; cor=; Ncor= a 0 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0
MA0865.3_shift9 (E2F8)				; oligos_7nt_mkv2_m2 versus MA0865.3 (E2F8); m=11/15; ncol2=9; w=0; offset=3; strand=D; shift=9; score=0.482156; ---------tTCCCGCc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 c 0 0 0 0 0 0 0 0 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 g 0 0 0 0 0 0 0 0 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 t 0 0 0 0 0 0 0 0 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0
MA2099.1_shift5 (ZNF770)				; oligos_7nt_mkv2_m2 versus MA2099.1 (ZNF770); m=12/15; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.460515; -----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0
MA1578.2_shift8 (VEZF1)				; oligos_7nt_mkv2_m2 versus MA1578.2 (VEZF1); m=13/15; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.411801; --------CCCCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0
MA1714.2_rc_shift0 (ZNF675_rc)				; oligos_7nt_mkv2_m2 versus MA1714.2_rc (ZNF675_rc); m=14/15; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.410324; CATTtTgkCCTCytrrk ; cor=; Ncor= a 21.0 699.0 1.0 1.0 44.0 103.0 199.0 28.0 108.0 115.0 51.0 14.0 21.0 140.0 428.0 320.0 101.0 c 937.0 46.0 3.0 3.0 172.0 33.0 35.0 78.0 857.0 843.0 233.0 934.0 647.0 174.0 94.0 133.0 247.0 g 5.0 224.0 5.0 3.0 108.0 83.0 656.0 304.0 5.0 7.0 21.0 10.0 19.0 245.0 338.0 361.0 261.0 t 37.0 30.0 991.0 994.0 676.0 781.0 110.0 590.0 30.0 35.0 695.0 42.0 313.0 441.0 140.0 186.0 391.0
MA1652.2_rc_shift4 (ZKSCAN5_rc)				; oligos_7nt_mkv2_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=15/15; ncol2=9; w=-2; offset=-2; strand=R; shift=4; score=0.400055; ----cTCACyTCC---- ; cor=; Ncor= a 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 c 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 g 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 t 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m3_shift2 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=11; shift=2; ncol=13; --vwCTTGAACty ; Alignment reference a 0 0 6 8 0 1 0 0 21 20 1 5 3 c 0 0 7 3 22 1 2 0 0 0 19 4 11 g 0 0 9 3 0 0 3 21 0 2 0 3 1 t 0 0 0 8 0 20 17 1 1 0 2 10 7
MA1541.2_rc_shift0 (NR6A1_rc)				; oligos_7nt_mkv2_m3 versus MA1541.2_rc (NR6A1_rc); m=1/12; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.638146; YGamCTTGAmCTT ; cor=; Ncor= a 41.0 254.0 896.0 373.0 62.0 65.0 14.0 40.0 896.0 453.0 62.0 51.0 11.0 c 359.0 109.0 355.0 524.0 896.0 35.0 2.0 29.0 26.0 443.0 896.0 72.0 44.0 g 20.0 896.0 185.0 11.0 15.0 96.0 0.0 896.0 74.0 12.0 9.0 91.0 4.0 t 896.0 39.0 91.0 29.0 21.0 896.0 896.0 7.0 1.0 19.0 13.0 896.0 896.0
MA1540.3_rc_shift0 (NR5A1_rc)				; oligos_7nt_mkv2_m3 versus MA1540.3_rc (NR5A1_rc); m=2/12; ncol2=12; w=-2; offset=-2; strand=R; shift=0; score=0.632868; TGaCCTTGAact- ; cor=; Ncor= a 198.0 247.0 3173.0 117.0 85.0 111.0 92.0 120.0 3843.0 2845.0 606.0 721.0 0 c 154.0 112.0 171.0 4440.0 4461.0 160.0 125.0 189.0 130.0 729.0 2825.0 633.0 0 g 144.0 4271.0 964.0 53.0 45.0 86.0 193.0 4316.0 564.0 747.0 558.0 398.0 0 t 4201.0 67.0 389.0 87.0 106.0 4340.0 4287.0 72.0 160.0 376.0 708.0 2945.0 0
MA0693.4_rc_shift6 (Vdr_rc)				; oligos_7nt_mkv2_m3 versus MA0693.4_rc (Vdr_rc); m=3/12; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.60031; ------TGAACTc ; cor=; Ncor= a 0 0 0 0 0 0 750.0 2057.0 35628.0 35489.0 1110.0 813.0 2150.0 c 0 0 0 0 0 0 826.0 406.0 574.0 1555.0 36028.0 1137.0 25359.0 g 0 0 0 0 0 0 661.0 34477.0 655.0 520.0 599.0 644.0 4678.0 t 0 0 0 0 0 0 36305.0 1602.0 1685.0 978.0 805.0 35948.0 6355.0
MA1581.2_shift3 (ZBTB6)				; oligos_7nt_mkv2_m3 versus MA1581.2 (ZBTB6); m=4/12; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.595776; ---sCTTGAGCC- ; cor=; Ncor= a 0 0 0 312.0 94.0 29.0 207.0 13.0 2158.0 58.0 56.0 102.0 0 c 0 0 0 1157.0 2080.0 104.0 45.0 59.0 28.0 20.0 2087.0 1814.0 0 g 0 0 0 593.0 25.0 52.0 409.0 2148.0 20.0 2135.0 38.0 88.0 0 t 0 0 0 165.0 28.0 2042.0 1566.0 7.0 21.0 14.0 46.0 223.0 0
MA1649.2_shift4 (ZBTB12)				; oligos_7nt_mkv2_m3 versus MA1649.2 (ZBTB12); m=5/12; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.559933; ----CTrGAAC-- ; cor=; Ncor= a 0 0 0 0 144.0 130.0 1841.0 86.0 4475.0 4508.0 51.0 0 0 c 0 0 0 0 4377.0 216.0 73.0 80.0 114.0 65.0 4511.0 0 0 g 0 0 0 0 175.0 190.0 2797.0 4478.0 106.0 103.0 50.0 0 0 t 0 0 0 0 71.0 4231.0 56.0 123.0 72.0 91.0 155.0 0 0
MA1994.2_shift2 (Nkx2-1)				; oligos_7nt_mkv2_m3 versus MA1994.2 (Nkx2-1); m=6/12; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.54592; --CACTTGA---- ; cor=; Ncor= a 0 0 289.0 15478.0 168.0 369.0 252.0 895.0 15245.0 0 0 0 0 c 0 0 14886.0 275.0 15640.0 162.0 518.0 657.0 243.0 0 0 0 0 g 0 0 181.0 146.0 118.0 605.0 315.0 14172.0 213.0 0 0 0 0 t 0 0 886.0 343.0 316.0 15106.0 15157.0 518.0 541.0 0 0 0 0
MA1534.2_shift6 (NR1I3)				; oligos_7nt_mkv2_m3 versus MA1534.2 (NR1I3); m=7/12; ncol2=8; w=0; offset=4; strand=D; shift=6; score=0.538472; ------TGAACTt ; cor=; Ncor= a 0 0 0 0 0 0 162.0 6626.0 48424.0 48424.0 0.0 0.0 14101.0 c 0 0 0 0 0 0 11168.0 100.0 2613.0 2972.0 48424.0 1870.0 15443.0 g 0 0 0 0 0 0 0.0 48424.0 342.0 0.0 0.0 0.0 3267.0 t 0 0 0 0 0 0 48424.0 0.0 791.0 0.0 0.0 48424.0 34323.0
MA2003.2_shift1 (NKX2-4)				; oligos_7nt_mkv2_m3 versus MA2003.2 (NKX2-4); m=8/12; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.463379; -cCACTTsA---- ; cor=; Ncor= a 0 385.0 14.0 1185.0 0.0 0.0 52.0 243.0 1185.0 0 0 0 0 c 0 1185.0 1185.0 127.0 1185.0 25.0 409.0 545.0 56.0 0 0 0 0 g 0 485.0 7.0 17.0 0.0 1.0 13.0 640.0 57.0 0 0 0 0 t 0 61.0 129.0 207.0 0.0 1185.0 1185.0 58.0 153.0 0 0 0 0
MA0673.2_shift1 (NKX2-8)				; oligos_7nt_mkv2_m3 versus MA0673.2 (NKX2-8); m=9/12; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.456893; -sCACTYsA---- ; cor=; Ncor= a 0 1942.0 70.0 8562.0 14.0 0.0 23.0 1738.0 8562.0 0 0 0 0 c 0 3529.0 8562.0 595.0 8562.0 91.0 3197.0 2267.0 908.0 0 0 0 0 g 0 2843.0 0.0 0.0 0.0 0.0 0.0 4286.0 696.0 0 0 0 0 t 0 249.0 2155.0 516.0 110.0 8562.0 8562.0 271.0 2158.0 0 0 0 0
MA0505.3_shift0 (Nr5A2)				; oligos_7nt_mkv2_m3 versus MA0505.3 (Nr5A2); m=10/12; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.444951; TGaCCTTGA---- ; cor=; Ncor= a 4020.0 2032.0 19888.0 327.0 299.0 364.0 266.0 340.0 26370.0 0 0 0 0 c 3118.0 869.0 1185.0 29854.0 29734.0 694.0 338.0 870.0 645.0 0 0 0 0 g 2303.0 27158.0 6736.0 124.0 166.0 359.0 285.0 29010.0 2402.0 0 0 0 0 t 21101.0 483.0 2733.0 237.0 343.0 29125.0 29653.0 322.0 1125.0 0 0 0 0
MA0672.2_shift1 (NKX2-3)				; oligos_7nt_mkv2_m3 versus MA0672.2 (NKX2-3); m=11/12; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.436016; -sCACTTra---- ; cor=; Ncor= a 0 2025.0 38.0 9278.0 8.0 0.0 0.0 4241.0 9278.0 0 0 0 0 c 0 9278.0 9278.0 98.0 9278.0 0.0 939.0 1451.0 917.0 0 0 0 0 g 0 4499.0 0.0 16.0 0.0 18.0 0.0 5037.0 1831.0 0 0 0 0 t 0 140.0 132.0 250.0 0.0 9278.0 9278.0 343.0 2437.0 0 0 0 0
MA1536.2_rc_shift6 (NR2C2_rc)				; oligos_7nt_mkv2_m3 versus MA1536.2_rc (NR2C2_rc); m=12/12; ncol2=6; w=0; offset=4; strand=R; shift=6; score=0.403463; ------YGACCy- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 0 c 0 0 0 0 0 0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 0 g 0 0 0 0 0 0 0.0 18628.0 0.0 0.0 236.0 719.0 0 t 0 0 0 0 0 0 18628.0 0.0 0.0 0.0 0.0 10232.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m4_shift3 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=12; shift=3; ncol=15; ---gsGATTACAGgy ; Alignment reference a 0 0 0 2 0 0 11 0 0 11 0 11 1 1 1 c 0 0 0 0 3 0 0 1 1 0 10 0 0 2 6 g 0 0 0 8 8 12 1 0 0 1 0 0 11 8 2 t 0 0 0 2 1 0 0 11 11 0 2 1 0 1 3
MA1547.2_rc_shift3 (PITX2_rc)				; oligos_7nt_mkv2_m4 versus MA1547.2_rc (PITX2_rc); m=1/12; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.572993; ---rGGATTAr---- ; cor=; Ncor= a 0 0 0 2222.0 189.0 0.0 8019.0 0.0 0.0 8019.0 3859.0 0 0 0 0 c 0 0 0 786.0 0.0 0.0 668.0 0.0 0.0 0.0 454.0 0 0 0 0 g 0 0 0 4129.0 8019.0 8019.0 0.0 0.0 0.0 51.0 2782.0 0 0 0 0 t 0 0 0 881.0 0.0 0.0 0.0 8019.0 8019.0 0.0 924.0 0 0 0 0
MA0712.3_shift3 (OTX2)				; oligos_7nt_mkv2_m4 versus MA0712.3 (OTX2); m=2/12; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.566461; ---rGGATTA----- ; cor=; Ncor= a 0 0 0 37155.0 5435.0 2918.0 116411.0 765.0 1913.0 114798.0 0 0 0 0 0 c 0 0 0 5322.0 827.0 1620.0 2220.0 598.0 1771.0 636.0 0 0 0 0 0 g 0 0 0 55814.0 111741.0 113842.0 706.0 787.0 1407.0 1302.0 0 0 0 0 0 t 0 0 0 22388.0 2676.0 2299.0 1342.0 118529.0 115588.0 3943.0 0 0 0 0 0
MA0629.2_rc_shift6 (Rhox11_rc)				; oligos_7nt_mkv2_m4 versus MA0629.2_rc (Rhox11_rc); m=3/12; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.527764; ------wTwACAGCr ; cor=; Ncor= a 0 0 0 0 0 0 36.0 15.0 43.0 99.0 2.0 99.0 0.0 1.0 25.0 c 0 0 0 0 0 0 1.0 3.0 0.0 0.0 94.0 1.0 15.0 95.0 6.0 g 0 0 0 0 0 0 10.0 4.0 0.0 1.0 0.0 0.0 76.0 1.0 56.0 t 0 0 0 0 0 0 52.0 78.0 56.0 1.0 4.0 1.0 9.0 3.0 13.0
MA0711.2_rc_shift4 (OTX1_rc)				; oligos_7nt_mkv2_m4 versus MA0711.2_rc (OTX1_rc); m=4/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.494715; ----gGATTA----- ; cor=; Ncor= a 0 0 0 0 3363.0 378.0 23441.0 0.0 544.0 23441.0 0 0 0 0 0 c 0 0 0 0 8662.0 659.0 3160.0 0.0 254.0 0.0 0 0 0 0 0 g 0 0 0 0 23441.0 23441.0 0.0 0.0 0.0 90.0 0 0 0 0 0 t 0 0 0 0 789.0 647.0 243.0 23441.0 23441.0 745.0 0 0 0 0 0
MA0467.3_shift4 (Crx)				; oligos_7nt_mkv2_m4 versus MA0467.3 (Crx); m=5/12; ncol2=6; w=0; offset=1; strand=D; shift=4; score=0.491146; ----GGATTA----- ; cor=; Ncor= a 0 0 0 0 19.0 26.0 4227.0 11.0 50.0 4241.0 0 0 0 0 0 c 0 0 0 0 155.0 36.0 17.0 32.0 25.0 25.0 0 0 0 0 0 g 0 0 0 0 4129.0 4200.0 42.0 9.0 20.0 23.0 0 0 0 0 0 t 0 0 0 0 30.0 71.0 47.0 4281.0 4238.0 44.0 0 0 0 0 0
MA0682.3_rc_shift4 (PITX1_rc)				; oligos_7nt_mkv2_m4 versus MA0682.3_rc (PITX1_rc); m=6/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.489626; ----GGATTA----- ; cor=; Ncor= a 0 0 0 0 547.0 141.0 10531.0 0.0 0.0 10531.0 0 0 0 0 0 c 0 0 0 0 134.0 0.0 1039.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 10531.0 10531.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 68.0 143.0 0.0 10531.0 10531.0 0.0 0 0 0 0 0
MA0648.2_rc_shift4 (GSC_rc)				; oligos_7nt_mkv2_m4 versus MA0648.2_rc (GSC_rc); m=7/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.489392; ----GGATTA----- ; cor=; Ncor= a 0 0 0 0 1099.0 787.0 6081.0 0.0 89.0 6081.0 0 0 0 0 0 c 0 0 0 0 828.0 452.0 144.0 0.0 176.0 0.0 0 0 0 0 0 g 0 0 0 0 6081.0 6081.0 25.0 0.0 71.0 54.0 0 0 0 0 0 t 0 0 0 0 315.0 416.0 0.0 6081.0 6081.0 0.0 0 0 0 0 0
MA0891.2_rc_shift4 (GSC2_rc)				; oligos_7nt_mkv2_m4 versus MA0891.2_rc (GSC2_rc); m=8/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.488928; ----gGATTA----- ; cor=; Ncor= a 0 0 0 0 439.0 204.0 2016.0 132.0 201.0 2016.0 0 0 0 0 0 c 0 0 0 0 422.0 179.0 145.0 0.0 56.0 0.0 0 0 0 0 0 g 0 0 0 0 2016.0 2016.0 41.0 11.0 87.0 0.0 0 0 0 0 0 t 0 0 0 0 182.0 255.0 0.0 2016.0 2016.0 116.0 0 0 0 0 0
MA0714.2_rc_shift4 (PITX3_rc)				; oligos_7nt_mkv2_m4 versus MA0714.2_rc (PITX3_rc); m=9/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.48766; ----GGATTA----- ; cor=; Ncor= a 0 0 0 0 968.0 236.0 6253.0 0.0 158.0 6253.0 0 0 0 0 0 c 0 0 0 0 239.0 166.0 1101.0 15.0 260.0 9.0 0 0 0 0 0 g 0 0 0 0 6253.0 6253.0 138.0 0.0 32.0 51.0 0 0 0 0 0 t 0 0 0 0 227.0 318.0 262.0 6253.0 6253.0 493.0 0 0 0 0 0
MA0719.2_rc_shift4 (RHOXF1_rc)				; oligos_7nt_mkv2_m4 versus MA0719.2_rc (RHOXF1_rc); m=10/12; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.44298; ----GGmTyA----- ; cor=; Ncor= a 0 0 0 0 2275.0 0.0 7376.0 0.0 1367.0 10916.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 3540.0 0.0 5373.0 478.0 0 0 0 0 0 g 0 0 0 0 10916.0 10916.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 10916.0 5543.0 2837.0 0 0 0 0 0
MA0883.2_shift0 (Dmbx1)				; oligos_7nt_mkv2_m4 versus MA0883.2 (Dmbx1); m=11/12; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.427826; rwmmGGATTA----- ; cor=; Ncor= a 49.0 49.0 25.0 28.0 6.0 0.0 94.0 0.0 1.0 97.0 0 0 0 0 0 c 8.0 8.0 36.0 50.0 1.0 1.0 6.0 0.0 1.0 0.0 0 0 0 0 0 g 31.0 13.0 18.0 20.0 93.0 99.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 12.0 30.0 21.0 3.0 0.0 0.0 0.0 99.0 98.0 3.0 0 0 0 0 0
MA0056.3_rc_shift1 (MZF1_rc)				; oligos_7nt_mkv2_m4 versus MA0056.3_rc (MZF1_rc); m=12/12; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.405882; -TGGGGATT------ ; cor=; Ncor= a 0 1111.0 369.0 154.0 114.0 93.0 7982.0 282.0 372.0 0 0 0 0 0 0 c 0 484.0 83.0 58.0 54.0 100.0 98.0 385.0 999.0 0 0 0 0 0 0 g 0 611.0 7673.0 7919.0 7939.0 7949.0 56.0 426.0 1016.0 0 0 0 0 0 0 t 0 6036.0 117.0 111.0 135.0 100.0 106.0 7149.0 5855.0 0 0 0 0 0 0