peak-motifs Microglia_MDD_off_on_drugs

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=16.77; evalue=1.7e-17

ccCCCACCCCcs

SGGGGGTGGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCCACCCCcs

PATZ1 MA1961.2 R 11 0.9167 0.840 0.770 NA NA

KLF5 MA0599.1 D 10 0.8333 0.862 0.718 NA NA

KLF16 MA0741.1 D 11 0.9167 0.751 0.688 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 208 (23.11%)
Max nb of predicted sites per peak: 28
(chr1:144076366-144077773)
Mean nb of predicted sites per peak: 1.77

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=13.35; evalue=4.5e-14

wwtTATTTTAAAAtAaww

WWTTATTTTAAAATAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtTATTTTAAAAtAaww

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 114 (12.67%)
Max nb of predicted sites per peak: 4
(chr5:158406913-158408111)
Mean nb of predicted sites per peak: 2.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=12.47; evalue=3.4e-13

kkGCCCAGGCaGGgsbs

SVSCCCTGCCTGGGCMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkGCCCAGGCaGGgsbs

ZNF213 MA2121.1 D 12 0.7059 0.937 0.661 NA NA

EGR2 MA0472.2 D 11 0.6471 0.723 0.468 NA NA

EGR3 MA0732.2 D 11 0.6471 0.715 0.463 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 243 (27.00%)
Max nb of predicted sites per peak: 20
(chrY:7272534-7276311)
Mean nb of predicted sites per peak: 2.01

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=11.25; evalue=5.6e-12

argcaAAGCAAGaa

TTCTTGCTTTGCYT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor argcaAAGCAAGaa

Sox11 MA0869.3 D 8 0.5714 0.773 0.442 NA NA

Elf5 MA0136.4 D 8 0.5714 0.749 0.428 NA NA

TCF7L2 MA0523.2 D 8 0.5333 0.792 0.422 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 135 (15.00%)
Max nb of predicted sites per peak: 2
(chrX:42187621-42189099)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=10.16; evalue=6.9e-11

srGCCCAGCCys

SRGGCTGGGCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srGCCCAGCCys

ZNF449 MA1656.2 D 10 0.8333 0.785 0.654 NA NA

ZNF416 MA1979.2 R 10 0.8333 0.752 0.627 NA NA

Zfp809 MA2125.1 D 9 0.7500 0.834 0.626 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 187 (20.78%)
Max nb of predicted sites per peak: 16
(chrY:7272534-7276311)
Mean nb of predicted sites per peak: 1.70

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv4_m1

k-mer sig=4.70; evalue=2e-05

wwAAAGAAAAwa

TWTTTTCTTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwAAAGAAAAwa

ZNF384 MA1125.2 D 8 0.6667 0.777 0.518 NA NA

Stat2 MA1623.2 D 9 0.6923 0.745 0.516 NA NA

Gata3 MA0037.5 R 8 0.6667 0.713 0.475 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 206 (22.89%)
Max nb of predicted sites per peak: 4
(chr7:132959541-132960374)
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv4_m2

k-mer sig=3.68; evalue=0.00021

ccCCCACCCCCvs

SBGGGGGTGGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCCACCCCCvs

PATZ1 MA1961.2 R 11 0.8462 0.860 0.728 NA NA

KLF16 MA0741.1 D 11 0.8462 0.793 0.671 NA NA

ZNF281 MA1630.3 R 10 0.7692 0.868 0.668 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 221 (24.56%)
Max nb of predicted sites per peak: 56
(chr1:144076366-144077773)
Mean nb of predicted sites per peak: 2.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv4_m3

k-mer sig=3.67; evalue=0.00021

ccCCCTCCChs

SDGGGAGGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCCTCCChs

PATZ1 MA1961.2 R 11 1.0000 0.834 0.834 NA NA

ZNF148 MA1653.2 D 10 0.9091 0.901 0.819 NA NA

KLF5 MA0599.1 D 10 0.9091 0.837 0.761 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 231 (25.67%)
Max nb of predicted sites per peak: 13
(chr6:148075391-148076726)
Mean nb of predicted sites per peak: 1.73

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv4_m4

k-mer sig=3.07; evalue=0.00085

aaAAAACAAAaa

TTTTTGTTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaAAAACAAAaa

FOXD2 MA0847.4 D 11 0.9167 0.722 0.661 NA NA

FOXD3 MA0041.3 D 12 0.8571 0.742 0.636 NA NA

Sox6 MA0515.1 R 10 0.8333 0.743 0.619 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 173 (19.22%)
Max nb of predicted sites per peak: 6
(chr5:7754700-7755385)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv4_m5

k-mer sig=2.78; evalue=0.0017

yyCCTTTCChm

KDGGAAAGGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCCTTTCChm

ZNF530 MA1981.2 R 11 0.7857 0.761 0.598 NA NA

ZNF184 MA2120.1 R 10 0.7143 0.736 0.526 NA NA

Nfatc2 MA0152.3 R 7 0.5833 0.888 0.518 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 163 (18.11%)
Max nb of predicted sites per peak: 4
(chr3:42264333-42266385)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Microglia_MDD_off_on_drugs_down (16/05/2025 18:44)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtTATTTTAAAAtAaww

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: Microglia_MDD_off_on_drugs_down (16/05/2025 18:44)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtTATTTTAAAAtAaww Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtTATTTTAAAAtAaww

Total matches= 0