; 2025-05-16.184139 peak-motifs -v 1 -title Microglia_MDD_off_on_drugs_up -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 2 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA ; 2025-05-16.184139 rsync -ruptl $RSAT/perl-scripts/lib/images/arrow*.gif $RSAT/perl-scripts/lib/images/UCSC_icon.jpg $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/images_html ; 2025-05-16.184139 $RSAT/perl-scripts/convert-seq -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifspeak_seq -from fasta -to fasta -mask non-dna | $RSAT/perl-scripts/sub-sequence -origin center -from -500 -to 499 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta ; 2025-05-16.184139 $RSAT/perl-scripts/purge-sequence -dna -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -ml 40 -mis 3 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta ; 2025-05-16.184140 $RSAT/perl-scripts/sequence-lengths -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_seqlen.tab ; $RSAT/perl-scripts/classfreq -v 1 -col 2 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_seqlen.tab -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_seqlen_distrib.tab ; 2025-05-16.184141 $RSAT/perl-scripts/XYgraph -lines -pointsize 0 -format png -title 'Peak lengths; Microglia_MDD_off_on_drugs_up' -xsize 700 -xcol 3 -xleg1 'Peak length' -ysize 250 -ycol 4 -yleg1 'Number of peaks' -xmin 0 -ymin 0 -xgstep2 20 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_seqlen_distrib.tab -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_seqlen_distrib.png ; 2025-05-16.184141 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -l 1 -1str -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab ; 2025-05-16.184141 $RSAT/perl-scripts/convert-background-model -from oligos -to inclusive -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png ; 2025-05-16.184141 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -l 2 -1str -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab ; 2025-05-16.184141 $RSAT/perl-scripts/convert-background-model -from oligos -to inclusive -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png ; 2025-05-16.184141 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_3nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -l 3 -1str -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_3nt.tab ; 2025-05-16.184141 $RSAT/perl-scripts/convert-background-model -from oligos -to inclusive -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_3nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_3nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_3nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_3nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_3nt.png ; 2025-05-16.184142 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'Microglia_MDD_off_on_drugs_up' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; 2025-05-16.184146 grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-5 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -colors $RSAT/perl-scripts/lib/color_palettes/1nt-1str_colors.tab -title 'Nucleotide composition profiles; test sequence; Microglia_MDD_off_on_drugs_up' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250 -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png ; 2025-05-16.184146 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 'Microglia_MDD_off_on_drugs_up' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab ; 2025-05-16.184153 grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-17 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -colors $RSAT/perl-scripts/lib/color_palettes/2nt-1str_colors.tab -title 'Dinucleotide composition profiles; test sequence; Microglia_MDD_off_on_drugs_up' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250 -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png ; 2025-05-16.184153 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 3 -ci 20 -img_format png -title 'Microglia_MDD_off_on_drugs_up' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20.tab ; 2025-05-16.184201 grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-65 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -title '3nucleotide composition profiles; test sequence; Microglia_MDD_off_on_drugs_up' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250 -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20.png ; 2025-05-16.184201 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab_time.txt $RSAT/perl-scripts/oligo-analysis -v 1 -quick -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -lth ratio 1 -lth occ_sig 0 -uth rank 100 -return occ,proba,rank -2str -noov -seqtype dna -l 6 -markov 3 -pseudo 0.01 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab ; 2025-05-16.184202 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_time.txt $RSAT/perl-scripts/matrix-from-patterns -v 1 -sites -seq $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -pl $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -toppat 100 -max_asmb_nb 5 -max_asmb_width 20 -subst 1 -prefix oligos_6nt_mkv3 -flanks 2 -collect_method matrix-scan-quick -logo -cluster none -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm ; 2025-05-16.184210 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab_time.txt $RSAT/perl-scripts/oligo-analysis -v 1 -quick -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -lth ratio 1 -lth occ_sig 0 -uth rank 100 -return occ,proba,rank -2str -noov -seqtype dna -l 7 -markov 4 -pseudo 0.01 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab ; 2025-05-16.184212 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_time.txt $RSAT/perl-scripts/matrix-from-patterns -v 1 -sites -seq $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -pl $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -toppat 100 -max_asmb_nb 5 -max_asmb_width 20 -subst 1 -prefix oligos_7nt_mkv4 -flanks 2 -collect_method matrix-scan-quick -logo -cluster none -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm ; 2025-05-16.184219 rm -f $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered.tf; cat $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_count_matrices.tf >> $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered.tf; cat $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.tf >> $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered.tf ; 2025-05-16.184219 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1.tab ; 2025-05-16.184219 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tab ; 2025-05-16.184219 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tab ; 2025-05-16.184220 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tab ; 2025-05-16.184220 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tab ; 2025-05-16.184220 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1.tab ; 2025-05-16.184220 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tab ; 2025-05-16.184220 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tab ; 2025-05-16.184220 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tab ; 2025-05-16.184221 $RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tab ; 2025-05-16.184221 $RSAT/perl-scripts/compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab; $RSAT/perl-scripts/text-to-html -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.html ; 2025-05-16.184228 $RSAT/perl-scripts/convert-graph -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab -ewidth -ecolors fire -layout spring -from tab -to gml -scol 3 -tcol 4 -wcol 5 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml ; 2025-05-16.184228 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184245 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184258 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184325 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184328 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184339 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184403 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184414 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184432 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184437 $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant ; 2025-05-16.184447 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab_time.txt $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; 2025-05-16.184658 $RSAT/perl-scripts/convert-graph -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab -ewidth -ecolors fire -layout spring -from tab -to gml -scol 3 -tcol 4 -wcol 5 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.gml ; 2025-05-16.184705 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab ; 2025-05-16.184705 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_site_distrib.tab ; 2025-05-16.184705 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_mkv3_m1' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_site_distrib.png ; 2025-05-16.184706 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites_per_peak.tab ; 2025-05-16.184706 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_mkv3_m1' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites_per_peak.png ; 2025-05-16.184706 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab ; 2025-05-16.184706 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_site_distrib.tab ; 2025-05-16.184706 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_mkv3_m2' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_site_distrib.png ; 2025-05-16.184707 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites_per_peak.tab ; 2025-05-16.184707 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_mkv3_m2' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites_per_peak.png ; 2025-05-16.184707 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites.tab ; 2025-05-16.184708 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_site_distrib.tab ; 2025-05-16.184708 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_mkv3_m3' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_site_distrib.png ; 2025-05-16.184708 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites_per_peak.tab ; 2025-05-16.184708 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_mkv3_m3' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites_per_peak.png ; 2025-05-16.184708 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites.tab ; 2025-05-16.184709 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_site_distrib.tab ; 2025-05-16.184709 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_mkv3_m4' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_site_distrib.png ; 2025-05-16.184709 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites_per_peak.tab ; 2025-05-16.184709 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_mkv3_m4' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites_per_peak.png ; 2025-05-16.184709 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab ; 2025-05-16.184710 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_site_distrib.tab ; 2025-05-16.184710 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_mkv3_m5' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_site_distrib.png ; 2025-05-16.184710 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites_per_peak.tab ; 2025-05-16.184710 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_mkv3_m5' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites_per_peak.png ; 2025-05-16.184710 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites.tab ; 2025-05-16.184711 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_site_distrib.tab ; 2025-05-16.184711 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_mkv4_m1' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_site_distrib.png ; 2025-05-16.184711 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites_per_peak.tab ; 2025-05-16.184711 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_mkv4_m1' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites_per_peak.png ; 2025-05-16.184711 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites.tab ; 2025-05-16.184712 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_site_distrib.tab ; 2025-05-16.184712 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_mkv4_m2' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_site_distrib.png ; 2025-05-16.184712 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites_per_peak.tab ; 2025-05-16.184713 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_mkv4_m2' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites_per_peak.png ; 2025-05-16.184713 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab ; 2025-05-16.184713 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_site_distrib.tab ; 2025-05-16.184713 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_mkv4_m3' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_site_distrib.png ; 2025-05-16.184714 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites_per_peak.tab ; 2025-05-16.184714 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_mkv4_m3' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites_per_peak.png ; 2025-05-16.184714 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites.tab ; 2025-05-16.184715 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_site_distrib.tab ; 2025-05-16.184715 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_mkv4_m4' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_site_distrib.png ; 2025-05-16.184715 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites_per_peak.tab ; 2025-05-16.184715 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_mkv4_m4' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites_per_peak.png ; 2025-05-16.184715 time -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab ; 2025-05-16.184716 grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_site_distrib.tab ; 2025-05-16.184716 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_mkv4_m5' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_site_distrib.png ; 2025-05-16.184716 $RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites_per_peak.tab ; 2025-05-16.184716 $RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites_per_peak.tab -lines -xcol 1 -ycol 4 -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_mkv4_m5' -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites_per_peak.png ; 2025-05-16.184716 cat $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab > $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/sites/peak-motifs_all_motifs_seqcoord.tab ; 2025-05-16.184717 $RSAT/perl-scripts/text-to-html -font variable -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_timelog.txt -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_timelog.html ; peak-motifs -v 1 -title Microglia_MDD_off_on_drugs_up -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 2 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA ; Program version 1.256 ; Parameter values ; seq_format fasta ; img_format png ; ref_motifs_format transfac ; purge_match_length 40 ; purge_mismatches 3 ; origin center ; offset 0 ; profiles_ci 20 ; profiles_max_graphs 20 ; profiles_strand -1str ; composition_oligo_lengths 1,2 ; profiles_noov -ovlp ; strand -2str ; disco_noov -noov ; oligo_min_len 6 ; oligo_max_len 7 ; patterns_max_rank 100 ; min_ratio 1 ; min_zscore 6 ; min_sig 0 ; oligo_min_mkv -3 ; oligo_max_mkv -3 ; under_represented 0 ; positions_max_graphs 20 ; asmb_toppat 100 ; max_asmb_width 20 ; matrix_nmotifs 5 ; Input files ; motif_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt ; test_seq /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifspeak_seq ; Directories ; output /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/ ; oligos_6nt_mkv3_m1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/ ; oligos_6nt_mkv3_m2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/ ; oligos_6nt_mkv3_m3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/ ; oligos_6nt_mkv3_m4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/ ; oligos_6nt_mkv3_m5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/ ; oligos_7nt_mkv4_m1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/ ; oligos_7nt_mkv4_m2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/ ; oligos_7nt_mkv4_m3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/ ; oligos_7nt_mkv4_m4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/ ; oligos_7nt_mkv4_m5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/ ; Output files ; 1nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab ; 1nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png ; 1nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt ; 1nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; 1nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png ; 1nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html ; 1nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab ; 2nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab ; 2nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png ; 2nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt ; 2nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab ; 2nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png ; 2nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html ; 2nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab ; 3nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_3nt.tab ; 3nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_3nt.png ; 3nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt ; 3nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20.tab ; 3nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20.png ; 3nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20_graph_index.html ; 3nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_3nt.tab ; archive /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_archive.zip ; links /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_links.html ; log /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_log.txt ; merged_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/sites/peak-motifs_all_motifs_seqcoord.tab ; merged_sites_bed /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/sites/peak-motifs_all_motifs_seqcoord.bed ; merged_words /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/merged_words/peak-motifs_merged_words.tab ; merged_words_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/merged_words/peak-motifs_merged_words_heatmap.png ; merged_words_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/merged_words/peak-motifs_merged_words.html ; motifs_disco_clusters /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered_clusters ; motifs_disco_clusters_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered_clusters_SUMMARY.html ; motifs_disco_compa /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab ; motifs_disco_compa_alignments_1ton /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab ; motifs_disco_compa_alignments_1ton_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html ; motifs_disco_compa_gml /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml ; motifs_disco_compa_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.html ; motifs_discovered /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered.tf ; motifs_discovered_table /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered_table.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_gml /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.gml ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html ; oligos_6nt_mkv3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab ; oligos_6nt_mkv3_2pssm /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_log.txt ; oligos_6nt_mkv3_asmb /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm.asmb ; oligos_6nt_mkv3_m1_logo /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_logo.png ; oligos_6nt_mkv3_m1_logo_rc /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_logo_rc.png ; oligos_6nt_mkv3_m1_pssm_enrichment /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_scan_mkv2_enrichment.tab ; oligos_6nt_mkv3_m1_pssm_enrichment_png /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_scan_mkv2_enrichment.png ; oligos_6nt_mkv3_m1_pssm_site_distrib /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_site_distrib.tab ; oligos_6nt_mkv3_m1_pssm_site_distrib_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_site_distrib.png ; oligos_6nt_mkv3_m1_pssm_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab ; oligos_6nt_mkv3_m1_pssm_sites_per_peak /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites_per_peak.tab ; oligos_6nt_mkv3_m1_pssm_sites_per_peak_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites_per_peak.png ; oligos_6nt_mkv3_m1_tab /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1.tab ; oligos_6nt_mkv3_m1_tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1.tf ; oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html ; oligos_6nt_mkv3_m1_vs_ref /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_vs_ref.tab ; oligos_6nt_mkv3_m1_vs_ref_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_vs_ref.html ; oligos_6nt_mkv3_m2_logo /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_logo.png ; oligos_6nt_mkv3_m2_logo_rc /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_logo_rc.png ; oligos_6nt_mkv3_m2_pssm_enrichment 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/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_scan_mkv2_enrichment.tab ; oligos_7nt_mkv4_m4_pssm_enrichment_png /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_scan_mkv2_enrichment.png ; oligos_7nt_mkv4_m4_pssm_site_distrib /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_site_distrib.tab ; oligos_7nt_mkv4_m4_pssm_site_distrib_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_site_distrib.png ; oligos_7nt_mkv4_m4_pssm_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites.tab ; oligos_7nt_mkv4_m4_pssm_sites_per_peak /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites_per_peak.tab ; oligos_7nt_mkv4_m4_pssm_sites_per_peak_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_sites_per_peak.png ; oligos_7nt_mkv4_m4_tab /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tab ; oligos_7nt_mkv4_m4_tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf ; oligos_7nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; oligos_7nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html ; oligos_7nt_mkv4_m4_vs_ref /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_ref.tab ; oligos_7nt_mkv4_m4_vs_ref_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_ref.html ; oligos_7nt_mkv4_m5_logo /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_logo.png ; oligos_7nt_mkv4_m5_logo_rc /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_logo_rc.png ; oligos_7nt_mkv4_m5_pssm_enrichment /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_scan_mkv2_enrichment.tab ; oligos_7nt_mkv4_m5_pssm_enrichment_png /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_scan_mkv2_enrichment.png ; oligos_7nt_mkv4_m5_pssm_site_distrib /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_site_distrib.tab ; oligos_7nt_mkv4_m5_pssm_site_distrib_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_site_distrib.png ; oligos_7nt_mkv4_m5_pssm_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab ; oligos_7nt_mkv4_m5_pssm_sites_per_peak /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites_per_peak.tab ; oligos_7nt_mkv4_m5_pssm_sites_per_peak_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites_per_peak.png ; oligos_7nt_mkv4_m5_tab /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tab ; oligos_7nt_mkv4_m5_tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tf ; oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html ; oligos_7nt_mkv4_m5_vs_ref /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_ref.tab ; oligos_7nt_mkv4_m5_vs_ref_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_ref.html ; oligos_7nt_mkv4_pssm_counts /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.txt ; oligos_7nt_mkv4_pssm_logo1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m1.png ; oligos_7nt_mkv4_pssm_logo2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m2.png ; oligos_7nt_mkv4_pssm_logo3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m3.png ; oligos_7nt_mkv4_pssm_logo4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m4.png ; oligos_7nt_mkv4_pssm_logo5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m5.png ; oligos_7nt_mkv4_pssm_logo_rc1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m1_rc.png ; oligos_7nt_mkv4_pssm_logo_rc2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m2_rc.png ; oligos_7nt_mkv4_pssm_logo_rc3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m3_rc.png ; oligos_7nt_mkv4_pssm_logo_rc4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m4_rc.png ; oligos_7nt_mkv4_pssm_logo_rc5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices_logo_m5_rc.png ; oligos_7nt_mkv4_pssm_sig /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_sig_matrices.tf ; oligos_7nt_mkv4_pssm_tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.tf ; small_summary /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_small_summary.html ; small_summary_txt /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_small_summary.txt ; synthesis /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_synthesis.html ; test_converted /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000.fasta ; test_purged /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta ; test_seqlen /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_seqlen.tab ; test_seqlen_distrib /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_seqlen_distrib.tab ; test_seqlen_distrib_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/data/sequences/peak-motifs_test_seqlen_distrib.png ; timelog /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_timelog.txt ; timelog_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_timelog.html ; timetable /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_timetable.txt ; 2025-05-16.184717 (cd $RSAT/public_html/tmp/www-data/2025/05/16 ; zip -ryq peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_archive.zip peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA -x peak-motifs_archive.zip) ; 2025-05-16.184718 rsync -ruptl $RSAT/perl-scripts/lib/images/arrow*.gif $RSAT/perl-scripts/lib/images/UCSC_icon.jpg $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/images_html ; peak-motifs -v 1 -title Microglia_MDD_off_on_drugs_up -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 2 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA ; Program version 1.256 ; Parameter values ; seq_format fasta ; img_format png ; ref_motifs_format transfac ; purge_match_length 40 ; purge_mismatches 3 ; origin center ; offset 0 ; profiles_ci 20 ; profiles_max_graphs 20 ; profiles_strand -1str ; composition_oligo_lengths 1,2 ; profiles_noov -ovlp ; strand -2str ; disco_noov -noov ; oligo_min_len 6 ; oligo_max_len 7 ; patterns_max_rank 100 ; min_ratio 1 ; min_zscore 6 ; min_sig 0 ; oligo_min_mkv -3 ; oligo_max_mkv -3 ; under_represented 0 ; positions_max_graphs 20 ; asmb_toppat 100 ; max_asmb_width 20 ; matrix_nmotifs 5 ; Input files ; motif_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt ; test_seq /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifspeak_seq ; Directories ; output /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/ ; oligos_6nt_mkv3_m1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/ ; oligos_6nt_mkv3_m2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m2/ ; oligos_6nt_mkv3_m3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m3/ ; oligos_6nt_mkv3_m4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m4/ ; oligos_6nt_mkv3_m5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m5/ ; oligos_7nt_mkv4_m1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m1/ ; oligos_7nt_mkv4_m2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m2/ ; oligos_7nt_mkv4_m3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m3/ ; oligos_7nt_mkv4_m4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/ ; oligos_7nt_mkv4_m5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/ ; Output files ; 1nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab ; 1nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png ; 1nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt ; 1nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; 1nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png ; 1nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html ; 1nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab ; 2nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab ; 2nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png ; 2nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt ; 2nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab ; 2nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png ; 2nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html ; 2nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab ; 3nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_freq-1str-ovlp_3nt.tab ; 3nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_heatmap-1str-ovlp_3nt.png ; 3nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_inclusive-1str-ovlp_3nt.txt ; 3nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20.tab ; 3nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20.png ; 3nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_profiles-1str-ovlp_3nt_ci20_graph_index.html ; 3nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/composition/peak-motifs_test_transitions-1str-ovlp_3nt.tab ; archive /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_archive.zip ; links /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_links.html ; log /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_log.txt ; merged_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/sites/peak-motifs_all_motifs_seqcoord.tab ; merged_sites_bed /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/sites/peak-motifs_all_motifs_seqcoord.bed ; merged_words /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/merged_words/peak-motifs_merged_words.tab ; merged_words_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/merged_words/peak-motifs_merged_words_heatmap.png ; merged_words_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/merged_words/peak-motifs_merged_words.html ; motifs_disco_clusters /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered_clusters ; motifs_disco_clusters_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered_clusters_SUMMARY.html ; motifs_disco_compa /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab ; motifs_disco_compa_alignments_1ton /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab ; motifs_disco_compa_alignments_1ton_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html ; motifs_disco_compa_gml /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml ; motifs_disco_compa_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_disco_compa.html ; motifs_discovered /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered.tf ; motifs_discovered_table /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/peak-motifs_motifs_discovered_table.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_gml /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.gml ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html ; oligos_6nt_mkv3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab ; oligos_6nt_mkv3_2pssm /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm_log.txt ; oligos_6nt_mkv3_asmb /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm.asmb ; oligos_6nt_mkv3_m1_logo /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_logo.png ; oligos_6nt_mkv3_m1_logo_rc /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_logo_rc.png ; oligos_6nt_mkv3_m1_pssm_enrichment /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_scan_mkv2_enrichment.tab ; oligos_6nt_mkv3_m1_pssm_enrichment_png /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_scan_mkv2_enrichment.png ; oligos_6nt_mkv3_m1_pssm_site_distrib /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_site_distrib.tab ; oligos_6nt_mkv3_m1_pssm_site_distrib_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_site_distrib.png ; oligos_6nt_mkv3_m1_pssm_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites.tab ; oligos_6nt_mkv3_m1_pssm_sites_per_peak /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites_per_peak.tab ; oligos_6nt_mkv3_m1_pssm_sites_per_peak_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_sites_per_peak.png ; oligos_6nt_mkv3_m1_tab /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1.tab ; oligos_6nt_mkv3_m1_tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1.tf ; oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html ; oligos_6nt_mkv3_m1_vs_ref /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_6nt_mkv3_m1/peak-motifs_oligos_6nt_mkv3_m1_vs_ref.tab ; oligos_6nt_mkv3_m1_vs_ref_html 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/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_ref.html ; oligos_7nt_mkv4_m5_logo /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_logo.png ; oligos_7nt_mkv4_m5_logo_rc /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_logo_rc.png ; oligos_7nt_mkv4_m5_pssm_enrichment /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_scan_mkv2_enrichment.tab ; oligos_7nt_mkv4_m5_pssm_enrichment_png /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_scan_mkv2_enrichment.png ; oligos_7nt_mkv4_m5_pssm_site_distrib /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_site_distrib.tab ; oligos_7nt_mkv4_m5_pssm_site_distrib_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_site_distrib.png ; oligos_7nt_mkv4_m5_pssm_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_sites.tab ; oligos_7nt_mkv4_m5_pssm_sites_per_peak 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/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_timelog.txt ; timelog_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_timelog.html ; timetable /var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_timetable.txt ; 2025-05-16.184718 (cd $RSAT/public_html/tmp/www-data/2025/05/16 ; zip -ryq peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_archive.zip peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_synthesis.html -x peak-motifs_archive.zip) ; 2025-05-16.184718 $RSAT/perl-scripts/text-to-html -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/reports/peak-motifs_small_summary.txt -no_sort -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_small_summary.html ; 2025-05-16.184718 (cd $RSAT/public_html/tmp/www-data/2025/05/16 ; zip -ryq peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_archive.zip peak-motifs.2025-05-16.184138_2025-05-16.184138_i86HuA/peak-motifs_small_summary.html -x peak-motifs_archive.zip) ; Host name rsat ; Job started 2025-05-16.184139 ; Job done 2025-05-16.184718 ; Seconds 0.36 ; user 0.37 ; system 0.31 ; cuser 302.84 ; csystem 37.96