position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Oligodendrocyte_precursor_cells_MDD_off_on_drugs_down -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 79 Sum of sequence lengths 60650 Min sequence length 0 Max sequence length 1000 Average sequence length 767 Possible positions 60650 Sequences: # length ID 1 913 chrX:19556-20468 2 1000 chr11:23454638-23455801 3 1000 chr21:13979529-13980865 4 1000 chr4:187059721-187060893 5 1000 chr14:92247921-92249090 6 1000 chr8:46408211-46409391 7 837 chr8:8836617-8837453 8 1000 chr14:92150236-92151963 9 1000 chr18:70030460-70032332 10 1000 chr12:64237956-64239125 11 1000 chr2:195279288-195280541 12 233 chr5:64208079-64208311 13 1000 chr1:191765006-191766114 14 819 chr17:51084978-51085796 15 565 chr13:91406375-91406939 16 1000 chrY:13703337-13705536 17 328 chr17:39260749-39261076 18 863 chr2:229299154-229300016 19 713 chr3:65877067-65877779 20 1000 chrY:2934529-2936330 21 1000 chr18:1394589-1396095 22 1000 chr5:21481240-21482787 23 1000 chr4:10898629-10900013 24 408 chr15:57692640-57693047 25 1000 chr9:42396213-42397759 26 884 chr5:161138717-161139600 27 1000 chr11:127065995-127067481 28 200 chr1:4719433-4719632 29 729 chr7:57426652-57427380 30 1000 chr18:14117119-14118292 31 210 chr3:24217670-24217879 32 320 chr12:26035993-26036312 33 277 chr8:106577674-106577950 34 1000 chr1:144076366-144077773 35 729 chr7:85751064-85751792 36 750 chr8:25673537-25674286 37 840 chr12:13233718-13234557 38 752 chr1:90428406-90429157 39 1000 chr7:147566425-147568844 40 349 chr1:34782095-34782443 41 470 chr10:3532542-3533011 42 252 chr19:29293328-29293579 43 531 chr2:42084082-42084612 44 580 chr5:115270530-115271109 45 1000 chrY:13478233-13480586 46 491 chr4:37242941-37243431 47 264 chr14:88831987-88832250 48 326 chr4:37604441-37604766 49 780 chr15:60411479-60412258 50 301 chr20:23853942-23854242 51 763 chr5:79960580-79961342 52 1000 chr17:70653807-70655841 53 459 chr6:12899497-12899955 54 1000 chrY:7725275-7726735 55 957 chr13:66322176-66323132 56 724 chr2:53549450-53550173 57 857 chr9:99042183-99043039 58 1000 chr18:11828781-11829817 59 1000 chr1:195174798-195175993 60 1000 chrX:33312185-33314160 61 1000 chrY:14821573-14823300 62 1000 chr1:86288474-86289587 63 632 chr3:176945152-176945783 64 671 chr1:203682463-203683133 65 427 chr16:89583840-89584266 66 1000 chr10:90189844-90190882 67 1000 chrY:8622046-8623290 68 331 chr3:65817663-65817993 69 478 chr18:45617120-45617597 70 1000 chr16:56136696-56138232 71 792 chr8:65008302-65009093 72 879 chr14:86298118-86298996 73 1000 chrY:12661405-12663543 74 1000 chr3:60802642-60804444 75 695 chr1:184172263-184172957 76 429 chr12:132117358-132117786 77 1000 chr10:10697000-10699017 78 1000 chr11:36887760-36888922 79 842 chr2:210750766-210751607 Oligonucleotide statistics: Total occurrences 59204 Position interval parameters: Position interval 20 Number of windows 50 Total positions 60650 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 35 700 2 -24 [-479,-460] -469.5 36 719 3 -23 [-459,-440] -449.5 38 739 4 -22 [-439,-420] -429.5 42 803 5 -21 [-419,-400] -409.5 45 889 6 -20 [-399,-380] -389.5 48 928 7 -19 [-379,-360] -369.5 53 1004 8 -18 [-359,-340] -349.5 55 1085 9 -17 [-339,-320] -329.5 56 1116 10 -16 [-319,-300] -309.5 57 1136 11 -15 [-299,-280] -289.5 59 1153 12 -14 [-279,-260] -269.5 60 1186 13 -13 [-259,-240] -249.5 61 1206 14 -12 [-239,-220] -229.5 64 1266 15 -11 [-219,-200] -209.5 67 1313 16 -10 [-199,-180] -189.5 67 1340 17 -9 [-179,-160] -169.5 71 1369 18 -8 [-159,-140] -149.5 73 1451 19 -7 [-139,-120] -129.5 76 1497 20 -6 [-119,-100] -109.5 78 1543 21 -5 [-99,-80] -89.5 79 1580 22 -4 [-79,-60] -69.5 79 1580 23 -3 [-59,-40] -49.5 79 1580 24 -2 [-39,-20] -29.5 79 1580 25 -1 [-19,0] -9.5 79 1580 26 0 [1,20] 10.5 79 1580 27 1 [21,40] 30.5 79 1580 28 2 [41,60] 50.5 79 1580 29 3 [61,80] 70.5 79 1580 30 4 [81,100] 90.5 79 1580 31 5 [101,120] 110.5 78 1540 32 6 [121,140] 130.5 76 1496 33 7 [141,160] 150.5 73 1450 34 8 [161,180] 170.5 71 1365 35 9 [181,200] 190.5 67 1340 36 10 [201,220] 210.5 67 1311 37 11 [221,240] 230.5 64 1261 38 12 [241,260] 250.5 61 1205 39 13 [261,280] 270.5 60 1185 40 14 [281,300] 290.5 59 1152 41 15 [301,320] 310.5 57 1136 42 16 [321,340] 330.5 56 1115 43 17 [341,360] 350.5 55 1083 44 18 [361,380] 370.5 53 1000 45 19 [381,400] 390.5 48 927 46 20 [401,420] 410.5 45 887 47 21 [421,440] 430.5 41 798 48 22 [441,460] 450.5 38 738 49 23 [461,480] 470.5 36 718 50 24 [481,500] 490.5 35 700 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 13333 | 81.7 | 49 | 2.3e-03 | 0.0093 | 2.03 | 1 | 151 | 149 | 159 | 173 | 181 | 199 | 198 | 205 | 218 | 246 | 241 | 262 | 291 | 244 | 282 | 280 | 288 | 340 | 334 | 336 | 365 | 392 | 399 | 381 | 390 | 379 | 320 | 305 | 338 | 341 | 352 | 329 | 303 | 315 | 305 | 326 | 263 | 253 | 271 | 295 | 268 | 237 | 225 | 200 | 190 | 173 | 174 | 155 | 145 | 167 |
| g | g | 13256 | 59.7 | 49 | 1.4e-01 | 0.56 | 0.25 | 2 | 179 | 163 | 148 | 199 | 195 | 194 | 222 | 264 | 239 | 222 | 273 | 240 | 248 | 280 | 299 | 313 | 306 | 344 | 341 | 329 | 348 | 348 | 318 | 335 | 345 | 335 | 390 | 393 | 365 | 368 | 341 | 311 | 317 | 268 | 289 | 267 | 265 | 254 | 234 | 233 | 234 | 242 | 229 | 214 | 200 | 208 | 175 | 134 | 155 | 143 |
| a | a | 16492 | 52.3 | 49 | 3.5e-01 | 1.4 | -0.14 | 3 | 186 | 207 | 223 | 211 | 267 | 258 | 305 | 310 | 314 | 331 | 317 | 330 | 337 | 378 | 365 | 364 | 382 | 370 | 377 | 397 | 415 | 414 | 444 | 420 | 423 | 399 | 402 | 432 | 432 | 417 | 433 | 394 | 433 | 360 | 350 | 341 | 369 | 351 | 345 | 307 | 319 | 271 | 298 | 270 | 253 | 241 | 196 | 193 | 184 | 157 |
| t | t | 16123 | 43.7 | 49 | 6.9e-01 | 2.7 | -0.44 | 4 | 184 | 200 | 209 | 220 | 246 | 277 | 279 | 305 | 325 | 312 | 296 | 298 | 290 | 335 | 331 | 343 | 373 | 397 | 417 | 441 | 438 | 422 | 399 | 424 | 400 | 413 | 400 | 390 | 402 | 418 | 372 | 422 | 366 | 390 | 367 | 345 | 325 | 307 | 322 | 304 | 291 | 307 | 271 | 286 | 264 | 235 | 196 | 181 | 188 | 200 |
Host name rsat Job started 2025-05-16.184204 Job done 2025-05-16.184204 Seconds 0.46 user 0.46 system 0.01 cuser 0 ; csystem 0