position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Oligodendrocyte_precursor_cells_MDD_off_on_drugs_down -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 79 Sum of sequence lengths 60650 Min sequence length 0 Max sequence length 1000 Average sequence length 767 Possible positions 60571 Sequences: # length ID 1 913 chrX:19556-20468 2 1000 chr11:23454638-23455801 3 1000 chr21:13979529-13980865 4 1000 chr4:187059721-187060893 5 1000 chr14:92247921-92249090 6 1000 chr8:46408211-46409391 7 837 chr8:8836617-8837453 8 1000 chr14:92150236-92151963 9 1000 chr18:70030460-70032332 10 1000 chr12:64237956-64239125 11 1000 chr2:195279288-195280541 12 233 chr5:64208079-64208311 13 1000 chr1:191765006-191766114 14 819 chr17:51084978-51085796 15 565 chr13:91406375-91406939 16 1000 chrY:13703337-13705536 17 328 chr17:39260749-39261076 18 863 chr2:229299154-229300016 19 713 chr3:65877067-65877779 20 1000 chrY:2934529-2936330 21 1000 chr18:1394589-1396095 22 1000 chr5:21481240-21482787 23 1000 chr4:10898629-10900013 24 408 chr15:57692640-57693047 25 1000 chr9:42396213-42397759 26 884 chr5:161138717-161139600 27 1000 chr11:127065995-127067481 28 200 chr1:4719433-4719632 29 729 chr7:57426652-57427380 30 1000 chr18:14117119-14118292 31 210 chr3:24217670-24217879 32 320 chr12:26035993-26036312 33 277 chr8:106577674-106577950 34 1000 chr1:144076366-144077773 35 729 chr7:85751064-85751792 36 750 chr8:25673537-25674286 37 840 chr12:13233718-13234557 38 752 chr1:90428406-90429157 39 1000 chr7:147566425-147568844 40 349 chr1:34782095-34782443 41 470 chr10:3532542-3533011 42 252 chr19:29293328-29293579 43 531 chr2:42084082-42084612 44 580 chr5:115270530-115271109 45 1000 chrY:13478233-13480586 46 491 chr4:37242941-37243431 47 264 chr14:88831987-88832250 48 326 chr4:37604441-37604766 49 780 chr15:60411479-60412258 50 301 chr20:23853942-23854242 51 763 chr5:79960580-79961342 52 1000 chr17:70653807-70655841 53 459 chr6:12899497-12899955 54 1000 chrY:7725275-7726735 55 957 chr13:66322176-66323132 56 724 chr2:53549450-53550173 57 857 chr9:99042183-99043039 58 1000 chr18:11828781-11829817 59 1000 chr1:195174798-195175993 60 1000 chrX:33312185-33314160 61 1000 chrY:14821573-14823300 62 1000 chr1:86288474-86289587 63 632 chr3:176945152-176945783 64 671 chr1:203682463-203683133 65 427 chr16:89583840-89584266 66 1000 chr10:90189844-90190882 67 1000 chrY:8622046-8623290 68 331 chr3:65817663-65817993 69 478 chr18:45617120-45617597 70 1000 chr16:56136696-56138232 71 792 chr8:65008302-65009093 72 879 chr14:86298118-86298996 73 1000 chrY:12661405-12663543 74 1000 chr3:60802642-60804444 75 695 chr1:184172263-184172957 76 429 chr12:132117358-132117786 77 1000 chr10:10697000-10699017 78 1000 chr11:36887760-36888922 79 842 chr2:210750766-210751607 Oligonucleotide statistics: Total occurrences 59101 Position interval parameters: Position interval 20 Number of windows 50 Total positions 60571 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 35 700 2 -24 [-479,-460] -469.5 36 719 3 -23 [-459,-440] -449.5 38 739 4 -22 [-439,-420] -429.5 42 803 5 -21 [-419,-400] -409.5 45 889 6 -20 [-399,-380] -389.5 48 928 7 -19 [-379,-360] -369.5 53 1004 8 -18 [-359,-340] -349.5 55 1085 9 -17 [-339,-320] -329.5 56 1116 10 -16 [-319,-300] -309.5 57 1136 11 -15 [-299,-280] -289.5 59 1153 12 -14 [-279,-260] -269.5 60 1186 13 -13 [-259,-240] -249.5 61 1206 14 -12 [-239,-220] -229.5 64 1266 15 -11 [-219,-200] -209.5 67 1313 16 -10 [-199,-180] -189.5 67 1340 17 -9 [-179,-160] -169.5 71 1369 18 -8 [-159,-140] -149.5 73 1451 19 -7 [-139,-120] -129.5 76 1497 20 -6 [-119,-100] -109.5 78 1543 21 -5 [-99,-80] -89.5 79 1580 22 -4 [-79,-60] -69.5 79 1580 23 -3 [-59,-40] -49.5 79 1580 24 -2 [-39,-20] -29.5 79 1580 25 -1 [-19,0] -9.5 79 1580 26 0 [1,20] 10.5 79 1580 27 1 [21,40] 30.5 79 1580 28 2 [41,60] 50.5 79 1580 29 3 [61,80] 70.5 79 1580 30 4 [81,100] 90.5 79 1579 31 5 [101,120] 110.5 78 1538 32 6 [121,140] 130.5 76 1493 33 7 [141,160] 150.5 73 1448 34 8 [161,180] 170.5 71 1361 35 9 [181,200] 190.5 67 1340 36 10 [201,220] 210.5 67 1308 37 11 [221,240] 230.5 64 1258 38 12 [241,260] 250.5 61 1204 39 13 [261,280] 270.5 60 1184 40 14 [281,300] 290.5 59 1150 41 15 [301,320] 310.5 57 1135 42 16 [321,340] 330.5 56 1114 43 17 [341,360] 350.5 55 1081 44 18 [361,380] 370.5 53 995 45 19 [381,400] 390.5 47 924 46 20 [401,420] 410.5 45 883 47 21 [421,440] 430.5 41 795 48 22 [441,460] 450.5 38 736 49 23 [461,480] 470.5 36 717 50 24 [481,500] 490.5 35 665 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| aa | aa | 5305 | 125.9 | 49 | 1.1e-08 | 1.7e-07 | 6.76 | 1 | 51 | 79 | 77 | 61 | 95 | 82 | 121 | 101 | 105 | 135 | 110 | 98 | 107 | 135 | 130 | 102 | 124 | 95 | 109 | 105 | 129 | 113 | 148 | 130 | 146 | 123 | 117 | 150 | 139 | 121 | 147 | 147 | 141 | 118 | 105 | 93 | 130 | 123 | 117 | 100 | 111 | 69 | 109 | 84 | 84 | 78 | 67 | 50 | 58 | 36 |
| cc | cc | 3624 | 107.5 | 49 | 2.9e-06 | 4.6e-05 | 4.34 | 2 | 44 | 34 | 39 | 47 | 54 | 50 | 59 | 46 | 62 | 63 | 61 | 69 | 86 | 62 | 75 | 79 | 80 | 89 | 85 | 93 | 97 | 121 | 136 | 117 | 120 | 105 | 69 | 71 | 89 | 83 | 91 | 85 | 79 | 93 | 86 | 103 | 67 | 63 | 74 | 97 | 80 | 70 | 60 | 47 | 47 | 46 | 32 | 44 | 37 | 38 |
| gg | gg | 3635 | 82.4 | 49 | 2.0e-03 | 0.032 | 1.50 | 3 | 56 | 47 | 31 | 63 | 51 | 52 | 61 | 74 | 68 | 57 | 84 | 66 | 74 | 96 | 98 | 97 | 89 | 101 | 97 | 78 | 104 | 92 | 74 | 88 | 97 | 88 | 112 | 123 | 98 | 106 | 91 | 77 | 86 | 70 | 68 | 59 | 70 | 60 | 66 | 57 | 58 | 52 | 69 | 53 | 55 | 53 | 53 | 42 | 42 | 32 |
| tt | tt | 5127 | 72.6 | 49 | 1.6e-02 | 0.25 | 0.60 | 4 | 54 | 78 | 76 | 72 | 79 | 90 | 98 | 94 | 108 | 102 | 97 | 77 | 90 | 121 | 105 | 113 | 125 | 126 | 146 | 146 | 144 | 123 | 127 | 141 | 113 | 118 | 107 | 109 | 133 | 127 | 93 | 140 | 102 | 134 | 119 | 119 | 107 | 98 | 103 | 101 | 89 | 96 | 85 | 96 | 89 | 76 | 58 | 60 | 64 | 59 |
| ta | ta | 3146 | 58.7 | 49 | 1.6e-01 | 2.6 | -0.41 | 5 | 38 | 28 | 49 | 43 | 60 | 62 | 61 | 70 | 73 | 58 | 46 | 68 | 66 | 78 | 72 | 83 | 70 | 66 | 69 | 86 | 75 | 74 | 79 | 78 | 72 | 72 | 71 | 90 | 60 | 77 | 69 | 74 | 83 | 70 | 66 | 68 | 58 | 60 | 72 | 50 | 62 | 59 | 55 | 64 | 46 | 49 | 34 | 42 | 36 | 35 |
| gt | gt | 2856 | 58.5 | 49 | 1.7e-01 | 2.7 | -0.43 | 6 | 26 | 35 | 32 | 40 | 49 | 50 | 62 | 73 | 55 | 47 | 52 | 54 | 34 | 52 | 53 | 63 | 62 | 76 | 74 | 72 | 74 | 74 | 63 | 60 | 72 | 73 | 93 | 83 | 63 | 77 | 69 | 78 | 74 | 63 | 68 | 54 | 52 | 55 | 59 | 51 | 60 | 65 | 39 | 49 | 40 | 53 | 35 | 34 | 31 | 34 |
| ct | ct | 4273 | 50.0 | 49 | 4.3e-01 | 6.9 | -0.84 | 7 | 56 | 43 | 47 | 50 | 51 | 63 | 51 | 62 | 81 | 91 | 76 | 84 | 80 | 75 | 88 | 83 | 90 | 105 | 106 | 105 | 127 | 119 | 125 | 129 | 127 | 124 | 116 | 105 | 117 | 109 | 126 | 112 | 92 | 102 | 103 | 95 | 78 | 80 | 78 | 88 | 75 | 70 | 79 | 80 | 64 | 53 | 63 | 43 | 48 | 59 |
| ga | ga | 3645 | 45.5 | 49 | 6.2e-01 | 9.9 | -0.99 | 8 | 60 | 42 | 41 | 48 | 56 | 44 | 54 | 63 | 72 | 65 | 71 | 70 | 65 | 75 | 71 | 86 | 85 | 94 | 84 | 86 | 97 | 100 | 98 | 95 | 94 | 85 | 99 | 98 | 117 | 102 | 101 | 76 | 99 | 70 | 79 | 87 | 83 | 80 | 61 | 64 | 65 | 64 | 69 | 65 | 61 | 58 | 37 | 30 | 49 | 30 |
| at | at | 3842 | 44.4 | 49 | 6.6e-01 | 11 | -1.02 | 9 | 49 | 42 | 54 | 57 | 67 | 69 | 77 | 73 | 80 | 72 | 68 | 80 | 89 | 93 | 78 | 91 | 94 | 88 | 91 | 113 | 104 | 99 | 87 | 98 | 83 | 96 | 87 | 92 | 91 | 102 | 80 | 94 | 105 | 87 | 75 | 76 | 79 | 79 | 84 | 62 | 69 | 69 | 68 | 69 | 66 | 47 | 38 | 50 | 44 | 37 |
| tc | tc | 3591 | 43.9 | 49 | 6.8e-01 | 11 | -1.04 | 10 | 43 | 45 | 35 | 45 | 45 | 55 | 46 | 55 | 66 | 77 | 56 | 72 | 59 | 63 | 65 | 64 | 77 | 97 | 86 | 89 | 100 | 108 | 89 | 105 | 107 | 99 | 93 | 82 | 92 | 96 | 101 | 92 | 85 | 95 | 84 | 84 | 84 | 72 | 81 | 76 | 63 | 59 | 62 | 62 | 62 | 43 | 48 | 41 | 40 | 46 |
| ac | ac | 3001 | 43.3 | 49 | 7.0e-01 | 11 | -1.05 | 11 | 31 | 32 | 38 | 37 | 41 | 48 | 40 | 52 | 46 | 57 | 55 | 75 | 71 | 60 | 71 | 64 | 66 | 76 | 84 | 66 | 84 | 93 | 82 | 68 | 82 | 80 | 75 | 63 | 71 | 76 | 87 | 63 | 80 | 67 | 61 | 75 | 55 | 56 | 66 | 70 | 59 | 55 | 47 | 39 | 38 | 44 | 44 | 45 | 30 | 36 |
| tg | tg | 4230 | 43.2 | 49 | 7.1e-01 | 11 | -1.05 | 12 | 49 | 49 | 49 | 60 | 62 | 70 | 74 | 86 | 78 | 75 | 97 | 81 | 75 | 73 | 89 | 83 | 101 | 108 | 115 | 120 | 119 | 117 | 104 | 100 | 107 | 124 | 129 | 109 | 117 | 118 | 108 | 115 | 95 | 91 | 98 | 73 | 75 | 76 | 66 | 76 | 76 | 92 | 67 | 64 | 67 | 66 | 55 | 37 | 47 | 48 |
| cg | cg | 1042 | 42.1 | 49 | 7.5e-01 | 12 | -1.08 | 13 | 13 | 13 | 18 | 21 | 17 | 13 | 21 | 18 | 11 | 18 | 22 | 10 | 24 | 21 | 26 | 25 | 18 | 30 | 25 | 24 | 25 | 23 | 19 | 23 | 30 | 27 | 25 | 32 | 20 | 30 | 19 | 31 | 28 | 18 | 22 | 23 | 22 | 24 | 20 | 26 | 27 | 18 | 19 | 17 | 16 | 16 | 17 | 8 | 15 | 14 |
| ag | ag | 4320 | 41.2 | 49 | 7.8e-01 | 12 | -1.09 | 14 | 55 | 54 | 54 | 56 | 64 | 59 | 67 | 84 | 83 | 67 | 83 | 77 | 70 | 90 | 86 | 107 | 98 | 111 | 93 | 113 | 98 | 109 | 127 | 124 | 111 | 99 | 123 | 127 | 131 | 118 | 118 | 89 | 106 | 86 | 109 | 97 | 104 | 93 | 78 | 73 | 80 | 77 | 74 | 76 | 64 | 70 | 47 | 48 | 52 | 41 |
| gc | gc | 3098 | 40.5 | 49 | 8.0e-01 | 13 | -1.11 | 15 | 37 | 39 | 44 | 48 | 39 | 48 | 45 | 53 | 44 | 52 | 66 | 50 | 75 | 57 | 77 | 67 | 70 | 73 | 85 | 93 | 73 | 81 | 83 | 92 | 82 | 88 | 86 | 89 | 87 | 82 | 80 | 80 | 58 | 63 | 73 | 67 | 59 | 59 | 47 | 61 | 51 | 60 | 52 | 45 | 44 | 43 | 48 | 28 | 33 | 42 |
| ca | ca | 4366 | 35.2 | 49 | 9.3e-01 | 15 | -1.17 | 16 | 38 | 59 | 55 | 55 | 59 | 73 | 67 | 79 | 64 | 74 | 82 | 98 | 101 | 85 | 92 | 93 | 100 | 116 | 118 | 114 | 116 | 129 | 119 | 112 | 113 | 123 | 110 | 97 | 112 | 118 | 115 | 100 | 104 | 101 | 94 | 103 | 95 | 86 | 99 | 84 | 85 | 79 | 67 | 55 | 61 | 57 | 60 | 59 | 45 | 46 |
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