/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
		file1	1	11	171
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m2 MA1653.2 oligos_6nt_mkv2_m2 ZNF148 0.762 0.693 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv2_m2 MA1522.2 oligos_6nt_mkv2_m2 MAZ 0.829 0.603 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m2 MA0685.2 oligos_6nt_mkv2_m2 SP4 0.726 0.594 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv2_m2 MA0734.4 oligos_6nt_mkv2_m2 Gli2 0.724 0.592 11 9 9 11 0.8182 0.8182 1.0000 D 0
oligos_6nt_mkv2_m2 MA1627.2 oligos_6nt_mkv2_m2 Wt1 0.785 0.589 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_6nt_mkv2_m2 MA0528.3 oligos_6nt_mkv2_m2 ZNF263 0.924 0.588 11 7 7 11 0.6364 0.6364 1.0000 R 1
oligos_6nt_mkv2_m2 MA1596.1 oligos_6nt_mkv2_m2 ZNF460 0.835 0.574 11 16 11 16 0.6875 1.0000 0.6875 D -5
oligos_6nt_mkv2_m2 MA0599.1 oligos_6nt_mkv2_m2 KLF5 0.744 0.558 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_6nt_mkv2_m2 MA1965.2 oligos_6nt_mkv2_m2 SP5 0.999 0.545 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_6nt_mkv2_m2 MA1990.2 oligos_6nt_mkv2_m2 Gli1 0.707 0.530 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_6nt_mkv2_m2 MA0493.3 oligos_6nt_mkv2_m2 KLF1 0.711 0.517 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6nt_mkv2_m2 MA1959.2 oligos_6nt_mkv2_m2 KLF7 0.709 0.516 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6nt_mkv2_m2 MA1513.2 oligos_6nt_mkv2_m2 KLF15 0.708 0.515 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m2 MA0039.5 oligos_6nt_mkv2_m2 KLF4 0.704 0.512 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m2 MA2125.1 oligos_6nt_mkv2_m2 Zfp809 0.732 0.488 11 9 8 12 0.6667 0.7273 0.8889 D 3
oligos_6nt_mkv2_m2 MA1587.1 oligos_6nt_mkv2_m2 ZNF135 0.729 0.486 11 14 10 15 0.6667 0.9091 0.7143 D -4
oligos_6nt_mkv2_m2 MA2099.1 oligos_6nt_mkv2_m2 ZNF770 0.756 0.441 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6nt_mkv2_m2 MA1723.2 oligos_6nt_mkv2_m2 PRDM9 0.789 0.434 11 20 11 20 0.5500 1.0000 0.5500 R -4
oligos_6nt_mkv2_m2 MA1714.2 oligos_6nt_mkv2_m2 ZNF675 0.739 0.428 11 19 11 19 0.5789 1.0000 0.5789 R -6
oligos_6nt_mkv2_m2 MA1578.2 oligos_6nt_mkv2_m2 VEZF1 0.758 0.413 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_6nt_mkv2_m2 MA1652.2 oligos_6nt_mkv2_m2 ZKSCAN5 0.767 0.413 11 9 7 13 0.5385 0.6364 0.7778 R -2
oligos_6nt_mkv2_m2 MA1116.2 oligos_6nt_mkv2_m2 RBPJ 0.748 0.408 11 6 6 11 0.5455 0.5455 1.0000 R 3 
 Host name	rsat
 Job started	2025-05-16.184230
 Job done	2025-05-16.184240
 Seconds	1.72
	user	1.72
	system	0.49
	cuser	7.43
;	csystem	0.69