One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift6 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift6 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=6; ncol=17; ------wsCCTCCCAmy ; Alignment reference a 0 0 0 0 0 0 47 37 6 6 10 5 7 5 119 48 41 c 0 0 0 0 0 0 39 43 162 158 0 160 158 158 14 50 56 g 0 0 0 0 0 0 31 50 1 4 6 0 3 4 7 41 31 t 0 0 0 0 0 0 54 41 2 3 155 6 3 4 31 32 43

MA1653.2_shift6 (ZNF148)
; oligos_6nt_mkv2_m2 versus MA1653.2 (ZNF148); m=1/22; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.693167; ------CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA1522.2_shift6 (MAZ)
; oligos_6nt_mkv2_m2 versus MA1522.2 (MAZ); m=2/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.602709; ------CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0

MA0685.2_rc_shift6 (SP4_rc)
; oligos_6nt_mkv2_m2 versus MA0685.2_rc (SP4_rc); m=3/22; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.593982; ------CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA0734.4_shift6 (Gli2)
; oligos_6nt_mkv2_m2 versus MA0734.4 (Gli2); m=4/22; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.592445; ------GACCACCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 60.0 1920.0 44.0 8.0 2216.0 9.0 313.0 59.0 2101.0 0 0 c 0 0 0 0 0 0 96.0 227.0 2404.0 2464.0 40.0 2451.0 2145.0 2288.0 85.0 0 0 g 0 0 0 0 0 0 2251.0 337.0 27.0 13.0 82.0 12.0 20.0 77.0 193.0 0 0 t 0 0 0 0 0 0 85.0 8.0 17.0 7.0 154.0 20.0 14.0 68.0 113.0 0 0

MA1627.2_shift8 (Wt1)
; oligos_6nt_mkv2_m2 versus MA1627.2 (Wt1); m=5/22; ncol2=10; w=0; offset=2; strand=D; shift=8; score=0.588634; --------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0

MA0528.3_rc_shift7 (ZNF263_rc)
; oligos_6nt_mkv2_m2 versus MA0528.3_rc (ZNF263_rc); m=6/22; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.587921; -------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0

MA1596.1_shift1 (ZNF460)
; oligos_6nt_mkv2_m2 versus MA1596.1 (ZNF460); m=7/22; ncol2=16; w=-5; offset=-5; strand=D; shift=1; score=0.574004; -rCCTCmGCCTCCCrrG ; cor=; Ncor= a 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0

MA0599.1_shift5 (KLF5)
; oligos_6nt_mkv2_m2 versus MA0599.1 (KLF5); m=8/22; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.557632; -----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA1965.2_shift8 (SP5)
; oligos_6nt_mkv2_m2 versus MA1965.2 (SP5); m=9/22; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.545102; --------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0

MA1990.2_shift5 (Gli1)
; oligos_6nt_mkv2_m2 versus MA1990.2 (Gli1); m=10/22; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score= 0.5304; -----rGACCACCCA-- ; cor=; Ncor= a 0 0 0 0 0 2124.0 113.0 3120.0 100.0 71.0 3653.0 38.0 559.0 153.0 3312.0 0 0 c 0 0 0 0 0 299.0 193.0 331.0 3744.0 3809.0 73.0 3827.0 3231.0 3566.0 188.0 0 0 g 0 0 0 0 0 1104.0 3535.0 498.0 88.0 74.0 87.0 75.0 145.0 110.0 251.0 0 0 t 0 0 0 0 0 476.0 162.0 54.0 71.0 49.0 190.0 63.0 68.0 174.0 252.0 0 0

MA0493.3_rc_shift6 (KLF1_rc)
; oligos_6nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=11/22; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.517379; ------CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA1959.2_rc_shift6 (KLF7_rc)
; oligos_6nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=12/22; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.515691; ------CcMCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA1513.2_shift6 (KLF15)
; oligos_6nt_mkv2_m2 versus MA1513.2 (KLF15); m=13/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.51494; ------cCCCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA0039.5_shift6 (KLF4)
; oligos_6nt_mkv2_m2 versus MA0039.5 (KLF4); m=14/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.511856; ------CCCCACCC--- ; cor=; Ncor= a 0 0 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0

MA2125.1_shift9 (Zfp809)
; oligos_6nt_mkv2_m2 versus MA2125.1 (Zfp809); m=15/22; ncol2=9; w=0; offset=3; strand=D; shift=9; score=0.487859; ---------wTCCCAGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 c 0 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 g 0 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 t 0 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0

MA1587.1_shift2 (ZNF135)
; oligos_6nt_mkv2_m2 versus MA1587.1 (ZNF135); m=16/22; ncol2=14; w=-4; offset=-4; strand=D; shift=2; score=0.485995; --cCTCGACCTCCyrr- ; cor=; Ncor= a 0 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0

MA2099.1_shift5 (ZNF770)
; oligos_6nt_mkv2_m2 versus MA2099.1 (ZNF770); m=17/22; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.440883; -----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0

MA1723.2_rc_shift2 (PRDM9_rc)
; oligos_6nt_mkv2_m2 versus MA1723.2_rc (PRDM9_rc); m=18/22; ncol2=20; w=-4; offset=-4; strand=R; shift=2; score=0.434209; --yTkyykCCyCCcTkc ; cor=; Ncor= a 0 0 29.0 46.0 204.0 186.0 151.0 151.0 2.0 2.0 116.0 37.0 11.0 107.0 11.0 107.0 213.0 c 0 0 572.0 169.0 107.0 441.0 274.0 204.0 976.0 993.0 344.0 932.0 853.0 529.0 204.0 213.0 485.0 g 0 0 81.0 2.0 423.0 2.0 178.0 292.0 2.0 2.0 90.0 2.0 11.0 204.0 11.0 379.0 169.0 t 0 0 318.0 783.0 265.0 371.0 397.0 353.0 20.0 2.0 450.0 29.0 125.0 160.0 774.0 300.0 134.0

MA1714.2_rc_shift0 (ZNF675_rc)
; oligos_6nt_mkv2_m2 versus MA1714.2_rc (ZNF675_rc); m=19/22; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.427848; CATTtTgkCCTCytrrk ; cor=; Ncor= a 21.0 699.0 1.0 1.0 44.0 103.0 199.0 28.0 108.0 115.0 51.0 14.0 21.0 140.0 428.0 320.0 101.0 c 937.0 46.0 3.0 3.0 172.0 33.0 35.0 78.0 857.0 843.0 233.0 934.0 647.0 174.0 94.0 133.0 247.0 g 5.0 224.0 5.0 3.0 108.0 83.0 656.0 304.0 5.0 7.0 21.0 10.0 19.0 245.0 338.0 361.0 261.0 t 37.0 30.0 991.0 994.0 676.0 781.0 110.0 590.0 30.0 35.0 695.0 42.0 313.0 441.0 140.0 186.0 391.0

MA1578.2_shift8 (VEZF1)
; oligos_6nt_mkv2_m2 versus MA1578.2 (VEZF1); m=20/22; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.413314; --------CCCCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0

MA1652.2_rc_shift4 (ZKSCAN5_rc)
; oligos_6nt_mkv2_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=21/22; ncol2=9; w=-2; offset=-2; strand=R; shift=4; score=0.413139; ----cTCACyTCC---- ; cor=; Ncor= a 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 c 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 g 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 t 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0

MA1116.2_rc_shift9 (RBPJ_rc)
; oligos_6nt_mkv2_m2 versus MA1116.2_rc (RBPJ_rc); m=22/22; ncol2=6; w=0; offset=3; strand=R; shift=9; score=0.407739; ---------TTCCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 c 0 0 0 0 0 0 0 0 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 g 0 0 0 0 0 0 0 0 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 t 0 0 0 0 0 0 0 0 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift6 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=6; ncol=17; ------wsCCTCCCAmy ; Alignment reference a 0 0 0 0 0 0 47 37 6 6 10 5 7 5 119 48 41 c 0 0 0 0 0 0 39 43 162 158 0 160 158 158 14 50 56 g 0 0 0 0 0 0 31 50 1 4 6 0 3 4 7 41 31 t 0 0 0 0 0 0 54 41 2 3 155 6 3 4 31 32 43
MA1653.2_shift6 (ZNF148)				; oligos_6nt_mkv2_m2 versus MA1653.2 (ZNF148); m=1/22; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.693167; ------CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA1522.2_shift6 (MAZ)				; oligos_6nt_mkv2_m2 versus MA1522.2 (MAZ); m=2/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.602709; ------CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA0685.2_rc_shift6 (SP4_rc)				; oligos_6nt_mkv2_m2 versus MA0685.2_rc (SP4_rc); m=3/22; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.593982; ------CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA0734.4_shift6 (Gli2)				; oligos_6nt_mkv2_m2 versus MA0734.4 (Gli2); m=4/22; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.592445; ------GACCACCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 60.0 1920.0 44.0 8.0 2216.0 9.0 313.0 59.0 2101.0 0 0 c 0 0 0 0 0 0 96.0 227.0 2404.0 2464.0 40.0 2451.0 2145.0 2288.0 85.0 0 0 g 0 0 0 0 0 0 2251.0 337.0 27.0 13.0 82.0 12.0 20.0 77.0 193.0 0 0 t 0 0 0 0 0 0 85.0 8.0 17.0 7.0 154.0 20.0 14.0 68.0 113.0 0 0
MA1627.2_shift8 (Wt1)				; oligos_6nt_mkv2_m2 versus MA1627.2 (Wt1); m=5/22; ncol2=10; w=0; offset=2; strand=D; shift=8; score=0.588634; --------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0
MA0528.3_rc_shift7 (ZNF263_rc)				; oligos_6nt_mkv2_m2 versus MA0528.3_rc (ZNF263_rc); m=6/22; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.587921; -------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0
MA1596.1_shift1 (ZNF460)				; oligos_6nt_mkv2_m2 versus MA1596.1 (ZNF460); m=7/22; ncol2=16; w=-5; offset=-5; strand=D; shift=1; score=0.574004; -rCCTCmGCCTCCCrrG ; cor=; Ncor= a 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0
MA0599.1_shift5 (KLF5)				; oligos_6nt_mkv2_m2 versus MA0599.1 (KLF5); m=8/22; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.557632; -----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0
MA1965.2_shift8 (SP5)				; oligos_6nt_mkv2_m2 versus MA1965.2 (SP5); m=9/22; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.545102; --------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0
MA1990.2_shift5 (Gli1)				; oligos_6nt_mkv2_m2 versus MA1990.2 (Gli1); m=10/22; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score= 0.5304; -----rGACCACCCA-- ; cor=; Ncor= a 0 0 0 0 0 2124.0 113.0 3120.0 100.0 71.0 3653.0 38.0 559.0 153.0 3312.0 0 0 c 0 0 0 0 0 299.0 193.0 331.0 3744.0 3809.0 73.0 3827.0 3231.0 3566.0 188.0 0 0 g 0 0 0 0 0 1104.0 3535.0 498.0 88.0 74.0 87.0 75.0 145.0 110.0 251.0 0 0 t 0 0 0 0 0 476.0 162.0 54.0 71.0 49.0 190.0 63.0 68.0 174.0 252.0 0 0
MA0493.3_rc_shift6 (KLF1_rc)				; oligos_6nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=11/22; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.517379; ------CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA1959.2_rc_shift6 (KLF7_rc)				; oligos_6nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=12/22; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.515691; ------CcMCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA1513.2_shift6 (KLF15)				; oligos_6nt_mkv2_m2 versus MA1513.2 (KLF15); m=13/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.51494; ------cCCCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA0039.5_shift6 (KLF4)				; oligos_6nt_mkv2_m2 versus MA0039.5 (KLF4); m=14/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.511856; ------CCCCACCC--- ; cor=; Ncor= a 0 0 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0
MA2125.1_shift9 (Zfp809)				; oligos_6nt_mkv2_m2 versus MA2125.1 (Zfp809); m=15/22; ncol2=9; w=0; offset=3; strand=D; shift=9; score=0.487859; ---------wTCCCAGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 c 0 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 g 0 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 t 0 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0
MA1587.1_shift2 (ZNF135)				; oligos_6nt_mkv2_m2 versus MA1587.1 (ZNF135); m=16/22; ncol2=14; w=-4; offset=-4; strand=D; shift=2; score=0.485995; --cCTCGACCTCCyrr- ; cor=; Ncor= a 0 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0
MA2099.1_shift5 (ZNF770)				; oligos_6nt_mkv2_m2 versus MA2099.1 (ZNF770); m=17/22; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.440883; -----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0
MA1723.2_rc_shift2 (PRDM9_rc)				; oligos_6nt_mkv2_m2 versus MA1723.2_rc (PRDM9_rc); m=18/22; ncol2=20; w=-4; offset=-4; strand=R; shift=2; score=0.434209; --yTkyykCCyCCcTkc ; cor=; Ncor= a 0 0 29.0 46.0 204.0 186.0 151.0 151.0 2.0 2.0 116.0 37.0 11.0 107.0 11.0 107.0 213.0 c 0 0 572.0 169.0 107.0 441.0 274.0 204.0 976.0 993.0 344.0 932.0 853.0 529.0 204.0 213.0 485.0 g 0 0 81.0 2.0 423.0 2.0 178.0 292.0 2.0 2.0 90.0 2.0 11.0 204.0 11.0 379.0 169.0 t 0 0 318.0 783.0 265.0 371.0 397.0 353.0 20.0 2.0 450.0 29.0 125.0 160.0 774.0 300.0 134.0
MA1714.2_rc_shift0 (ZNF675_rc)				; oligos_6nt_mkv2_m2 versus MA1714.2_rc (ZNF675_rc); m=19/22; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.427848; CATTtTgkCCTCytrrk ; cor=; Ncor= a 21.0 699.0 1.0 1.0 44.0 103.0 199.0 28.0 108.0 115.0 51.0 14.0 21.0 140.0 428.0 320.0 101.0 c 937.0 46.0 3.0 3.0 172.0 33.0 35.0 78.0 857.0 843.0 233.0 934.0 647.0 174.0 94.0 133.0 247.0 g 5.0 224.0 5.0 3.0 108.0 83.0 656.0 304.0 5.0 7.0 21.0 10.0 19.0 245.0 338.0 361.0 261.0 t 37.0 30.0 991.0 994.0 676.0 781.0 110.0 590.0 30.0 35.0 695.0 42.0 313.0 441.0 140.0 186.0 391.0
MA1578.2_shift8 (VEZF1)				; oligos_6nt_mkv2_m2 versus MA1578.2 (VEZF1); m=20/22; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.413314; --------CCCCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0
MA1652.2_rc_shift4 (ZKSCAN5_rc)				; oligos_6nt_mkv2_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=21/22; ncol2=9; w=-2; offset=-2; strand=R; shift=4; score=0.413139; ----cTCACyTCC---- ; cor=; Ncor= a 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 c 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 g 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 t 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0
MA1116.2_rc_shift9 (RBPJ_rc)				; oligos_6nt_mkv2_m2 versus MA1116.2_rc (RBPJ_rc); m=22/22; ncol2=6; w=0; offset=3; strand=R; shift=9; score=0.407739; ---------TTCCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 c 0 0 0 0 0 0 0 0 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 g 0 0 0 0 0 0 0 0 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 t 0 0 0 0 0 0 0 0 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0