One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift1 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -mkCCCAGChy ; Alignment reference a 0 35 32 2 3 0 121 1 0 34 29 c 0 42 23 128 126 119 7 4 130 35 39 g 0 26 37 0 3 5 4 125 0 26 27 t 0 29 40 2 0 8 0 2 2 37 37

MA2125.1_shift1 (Zfp809)
; oligos_6nt_mkv2_m3 versus MA2125.1 (Zfp809); m=1/14; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.79132; -wTCCCAGCc- ; cor=; Ncor= a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0

MA1979.2_rc_shift1 (ZNF416_rc)
; oligos_6nt_mkv2_m3 versus MA1979.2_rc (ZNF416_rc); m=2/14; ncol2=10; w=0; offset=0; strand=R; shift=1; score=0.705555; -tGCCCAGAtA ; cor=; Ncor= a 0 66.0 18.0 3.0 3.0 2.0 336.0 3.0 254.0 46.0 240.0 c 0 29.0 3.0 341.0 335.0 335.0 1.0 7.0 15.0 77.0 26.0 g 0 38.0 320.0 1.0 5.0 7.0 6.0 334.0 28.0 25.0 32.0 t 0 212.0 4.0 0.0 2.0 1.0 2.0 1.0 48.0 197.0 47.0

MA2341.1_shift3 (FEZF2)
; oligos_6nt_mkv2_m3 versus MA2341.1 (FEZF2); m=3/14; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.67802; ---CCCAGCCT ; cor=; Ncor= a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0

MA1656.2_shift0 (ZNF449)
; oligos_6nt_mkv2_m3 versus MA1656.2 (ZNF449); m=4/14; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.576954; aAGCCCAACc- ; cor=; Ncor= a 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 0 c 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 0 g 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 0 t 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 0

MA1629.2_shift3 (Zic2)
; oligos_6nt_mkv2_m3 versus MA1629.2 (Zic2); m=5/14; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.52618; ---CaCAGCAG ; cor=; Ncor= a 0 0 0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 c 0 0 0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 g 0 0 0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 t 0 0 0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0

MA1116.2_rc_shift1 (RBPJ_rc)
; oligos_6nt_mkv2_m3 versus MA1116.2_rc (RBPJ_rc); m=6/14; ncol2=6; w=0; offset=0; strand=R; shift=1; score=0.487566; -TTCCCA---- ; cor=; Ncor= a 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 0 0 c 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 0 0 g 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 0 0 t 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0 0 0

MA1997.2_shift5 (Olig2)
; oligos_6nt_mkv2_m3 versus MA1997.2 (Olig2); m=7/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.486587; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 c 0 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 g 0 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 t 0 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0

MA0633.3_rc_shift5 (Twist2_rc)
; oligos_6nt_mkv2_m3 versus MA0633.3_rc (Twist2_rc); m=8/14; ncol2=6; w=0; offset=4; strand=R; shift=5; score=0.486217; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 15.0 48918.0 9.0 21.0 0.0 60.0 c 0 0 0 0 0 49473.0 342.0 16.0 49583.0 369.0 81.0 g 0 0 0 0 0 81.0 369.0 49583.0 16.0 345.0 49473.0 t 0 0 0 0 0 60.0 0.0 21.0 9.0 48915.0 15.0

MA1993.2_shift5 (Neurod2)
; oligos_6nt_mkv2_m3 versus MA1993.2 (Neurod2); m=9/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.486131; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 c 0 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 g 0 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 t 0 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0

MA1635.2_shift5 (BHLHE22)
; oligos_6nt_mkv2_m3 versus MA1635.2 (BHLHE22); m=10/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.485288; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 c 0 0 0 0 0 18331.0 37.0 53.0 18288.0 52.0 15.0 g 0 0 0 0 0 11.0 52.0 18288.0 53.0 37.0 18327.0 t 0 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0

MA0521.3_shift5 (Tcf12)
; oligos_6nt_mkv2_m3 versus MA0521.3 (Tcf12); m=11/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.480464; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 367.0 72283.0 836.0 1565.0 341.0 549.0 c 0 0 0 0 0 72674.0 739.0 1814.0 69780.0 632.0 402.0 g 0 0 0 0 0 404.0 632.0 69780.0 1814.0 738.0 72670.0 t 0 0 0 0 0 550.0 341.0 1565.0 836.0 72284.0 374.0

MA1986.2_shift0 (ZNF692)
; oligos_6nt_mkv2_m3 versus MA1986.2 (ZNF692); m=12/14; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.465832; gGGCCCAs--- ; cor=; Ncor= a 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 852.0 0 0 0 c 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 4998.0 0 0 0 g 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 3703.0 0 0 0 t 1195.0 13.0 26.0 22.0 17.0 21.0 0.0 1192.0 0 0 0

MA0697.3_shift5 (Zic3)
; oligos_6nt_mkv2_m3 versus MA0697.3 (Zic3); m=13/14; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.444182; -----CAGCAG ; cor=; Ncor= a 0 0 0 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 c 0 0 0 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 g 0 0 0 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 t 0 0 0 0 0 334.0 596.0 266.0 792.0 858.0 967.0

MA1628.2_shift5 (Zic1::Zic2)
; oligos_6nt_mkv2_m3 versus MA1628.2 (Zic1::Zic2); m=14/14; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.443478; -----CAGCAG ; cor=; Ncor= a 0 0 0 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 c 0 0 0 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 g 0 0 0 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 t 0 0 0 0 0 163.0 4.0 74.0 428.0 4.0 90.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -mkCCCAGChy ; Alignment reference a 0 35 32 2 3 0 121 1 0 34 29 c 0 42 23 128 126 119 7 4 130 35 39 g 0 26 37 0 3 5 4 125 0 26 27 t 0 29 40 2 0 8 0 2 2 37 37
MA2125.1_shift1 (Zfp809)				; oligos_6nt_mkv2_m3 versus MA2125.1 (Zfp809); m=1/14; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.79132; -wTCCCAGCc- ; cor=; Ncor= a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0
MA1979.2_rc_shift1 (ZNF416_rc)				; oligos_6nt_mkv2_m3 versus MA1979.2_rc (ZNF416_rc); m=2/14; ncol2=10; w=0; offset=0; strand=R; shift=1; score=0.705555; -tGCCCAGAtA ; cor=; Ncor= a 0 66.0 18.0 3.0 3.0 2.0 336.0 3.0 254.0 46.0 240.0 c 0 29.0 3.0 341.0 335.0 335.0 1.0 7.0 15.0 77.0 26.0 g 0 38.0 320.0 1.0 5.0 7.0 6.0 334.0 28.0 25.0 32.0 t 0 212.0 4.0 0.0 2.0 1.0 2.0 1.0 48.0 197.0 47.0
MA2341.1_shift3 (FEZF2)				; oligos_6nt_mkv2_m3 versus MA2341.1 (FEZF2); m=3/14; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.67802; ---CCCAGCCT ; cor=; Ncor= a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0
MA1656.2_shift0 (ZNF449)				; oligos_6nt_mkv2_m3 versus MA1656.2 (ZNF449); m=4/14; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.576954; aAGCCCAACc- ; cor=; Ncor= a 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 0 c 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 0 g 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 0 t 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 0
MA1629.2_shift3 (Zic2)				; oligos_6nt_mkv2_m3 versus MA1629.2 (Zic2); m=5/14; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.52618; ---CaCAGCAG ; cor=; Ncor= a 0 0 0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 c 0 0 0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 g 0 0 0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 t 0 0 0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0
MA1116.2_rc_shift1 (RBPJ_rc)				; oligos_6nt_mkv2_m3 versus MA1116.2_rc (RBPJ_rc); m=6/14; ncol2=6; w=0; offset=0; strand=R; shift=1; score=0.487566; -TTCCCA---- ; cor=; Ncor= a 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 0 0 c 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 0 0 g 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 0 0 t 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0 0 0
MA1997.2_shift5 (Olig2)				; oligos_6nt_mkv2_m3 versus MA1997.2 (Olig2); m=7/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.486587; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 c 0 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 g 0 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 t 0 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0
MA0633.3_rc_shift5 (Twist2_rc)				; oligos_6nt_mkv2_m3 versus MA0633.3_rc (Twist2_rc); m=8/14; ncol2=6; w=0; offset=4; strand=R; shift=5; score=0.486217; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 15.0 48918.0 9.0 21.0 0.0 60.0 c 0 0 0 0 0 49473.0 342.0 16.0 49583.0 369.0 81.0 g 0 0 0 0 0 81.0 369.0 49583.0 16.0 345.0 49473.0 t 0 0 0 0 0 60.0 0.0 21.0 9.0 48915.0 15.0
MA1993.2_shift5 (Neurod2)				; oligos_6nt_mkv2_m3 versus MA1993.2 (Neurod2); m=9/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.486131; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 c 0 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 g 0 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 t 0 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0
MA1635.2_shift5 (BHLHE22)				; oligos_6nt_mkv2_m3 versus MA1635.2 (BHLHE22); m=10/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.485288; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 c 0 0 0 0 0 18331.0 37.0 53.0 18288.0 52.0 15.0 g 0 0 0 0 0 11.0 52.0 18288.0 53.0 37.0 18327.0 t 0 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0
MA0521.3_shift5 (Tcf12)				; oligos_6nt_mkv2_m3 versus MA0521.3 (Tcf12); m=11/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.480464; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 367.0 72283.0 836.0 1565.0 341.0 549.0 c 0 0 0 0 0 72674.0 739.0 1814.0 69780.0 632.0 402.0 g 0 0 0 0 0 404.0 632.0 69780.0 1814.0 738.0 72670.0 t 0 0 0 0 0 550.0 341.0 1565.0 836.0 72284.0 374.0
MA1986.2_shift0 (ZNF692)				; oligos_6nt_mkv2_m3 versus MA1986.2 (ZNF692); m=12/14; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.465832; gGGCCCAs--- ; cor=; Ncor= a 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 852.0 0 0 0 c 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 4998.0 0 0 0 g 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 3703.0 0 0 0 t 1195.0 13.0 26.0 22.0 17.0 21.0 0.0 1192.0 0 0 0
MA0697.3_shift5 (Zic3)				; oligos_6nt_mkv2_m3 versus MA0697.3 (Zic3); m=13/14; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.444182; -----CAGCAG ; cor=; Ncor= a 0 0 0 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 c 0 0 0 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 g 0 0 0 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 t 0 0 0 0 0 334.0 596.0 266.0 792.0 858.0 967.0
MA1628.2_shift5 (Zic1::Zic2)				; oligos_6nt_mkv2_m3 versus MA1628.2 (Zic1::Zic2); m=14/14; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.443478; -----CAGCAG ; cor=; Ncor= a 0 0 0 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 c 0 0 0 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 g 0 0 0 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 t 0 0 0 0 0 163.0 4.0 74.0 428.0 4.0 90.0