One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv2_m5_shift0 (oligos_6nt_mkv2_m5) |
 |
|
|
; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=13; shift=0; ncol=13; mrdTCACTGCAvy
; Alignment reference
a 37 29 28 6 1 99 5 2 2 3 90 29 23
c 27 26 23 12 100 2 97 1 3 94 9 30 29
g 20 31 27 8 3 2 3 1 98 6 3 27 18
t 24 22 30 82 4 5 3 104 5 5 6 22 38
|
| MA0038.3_shift0 (GFI1) |
 |
|
|
; oligos_6nt_mkv2_m5 versus MA0038.3 (GFI1); m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.667378; mAATCACdGCa--
; cor=; Ncor=
a 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 2294.0 292.0 16713.0 0 0
c 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 266.0 27891.0 5221.0 0 0
g 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 27514.0 0.0 4079.0 0 0
t 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0 888.0 3702.0 4134.0 0 0
|
| MA1731.2_shift0 (ZNF768) |
 |
|
|
; oligos_6nt_mkv2_m5 versus MA1731.2 (ZNF768); m=2/2; ncol2=9; w=0; offset=0; strand=D; shift=0; score=0.488976; sCcTCTCTG----
; cor=; Ncor=
a 211.0 29.0 43.0 34.0 1.0 6.0 1.0 1.0 1.0 0 0 0 0
c 478.0 768.0 655.0 39.0 950.0 6.0 987.0 1.0 25.0 0 0 0 0
g 268.0 62.0 179.0 11.0 29.0 43.0 11.0 11.0 973.0 0 0 0 0
t 43.0 141.0 123.0 917.0 20.0 945.0 1.0 987.0 1.0 0 0 0 0
|