One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift1 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=17; shift=1; ncol=18; -rmmGCsGCGGCGGsGrg ; Alignment reference a 0 48 46 52 6 2 5 4 7 2 5 6 4 5 7 7 31 26 c 0 29 48 40 10 111 81 1 99 18 2 90 7 5 34 19 21 19 g 0 42 21 26 103 9 33 116 11 99 113 12 108 110 68 84 52 55 t 0 4 8 5 4 1 4 2 6 4 3 15 4 3 14 13 19 23

MA1721.2_shift0 (ZNF93)
; oligos_7nt_mkv2_m2 versus MA1721.2 (ZNF93); m=1/9; ncol2=14; w=-1; offset=-1; strand=D; shift=0; score=0.569225; gGyrkCrGCAGCGG---- ; cor=; Ncor= a 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0 0 0 0 0 c 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0 0 0 0 0 g 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0 0 0 0 0 t 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0 0 0 0 0

MA1961.2_shift6 (PATZ1)
; oligos_7nt_mkv2_m2 versus MA1961.2 (PATZ1); m=2/9; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.512935; ------sGGGGmGGGGs- ; cor=; Ncor= a 0 0 0 0 0 0 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 c 0 0 0 0 0 0 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 g 0 0 0 0 0 0 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 t 0 0 0 0 0 0 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0

MA0751.2_rc_shift6 (ZIC4_rc)
; oligos_7nt_mkv2_m2 versus MA0751.2_rc (ZIC4_rc); m=3/9; ncol2=14; w=0; offset=5; strand=R; shift=6; score=0.454827; ------CrCmrCrGGGGG ; cor=; Ncor= a 0 0 0 0 0 0 1156.0 1454.0 67.0 3488.0 1017.0 69.0 1078.0 11.0 1.0 275.0 147.0 98.0 c 0 0 0 0 0 0 4522.0 599.0 5086.0 1903.0 252.0 4795.0 6.0 0.0 0.0 225.0 121.0 52.0 g 0 0 0 0 0 0 452.0 1044.0 18.0 865.0 2279.0 68.0 2222.0 2985.0 2999.0 2757.0 2890.0 2870.0 t 0 0 0 0 0 0 74.0 704.0 258.0 1052.0 24.0 1095.0 24.0 114.0 8.0 614.0 209.0 315.0

MA0516.3_shift7 (SP2)
; oligos_7nt_mkv2_m2 versus MA0516.3 (SP2); m=4/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.43563; -------GGGGCGGGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 c 0 0 0 0 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 g 0 0 0 0 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 t 0 0 0 0 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0

MA0079.5_shift7 (SP1)
; oligos_7nt_mkv2_m2 versus MA0079.5 (SP1); m=5/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.42991; -------GGGGMGGrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 c 0 0 0 0 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 g 0 0 0 0 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 t 0 0 0 0 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0

MA0742.2_shift7 (KLF12)
; oligos_7nt_mkv2_m2 versus MA0742.2 (KLF12); m=6/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.422295; -------GGGGCGGGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 c 0 0 0 0 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 g 0 0 0 0 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 t 0 0 0 0 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0

MA1511.2_shift7 (KLF10)
; oligos_7nt_mkv2_m2 versus MA1511.2 (KLF10); m=7/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.419601; -------GGGGCGKGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 c 0 0 0 0 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 g 0 0 0 0 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 t 0 0 0 0 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0

MA0685.2_shift7 (SP4)
; oligos_7nt_mkv2_m2 versus MA0685.2 (SP4); m=8/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.41351; -------gGGGMGGrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 c 0 0 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 g 0 0 0 0 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 t 0 0 0 0 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0

MA0740.2_shift7 (KLF14)
; oligos_7nt_mkv2_m2 versus MA0740.2 (KLF14); m=9/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.402598; -------kGGGCGKGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 c 0 0 0 0 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 g 0 0 0 0 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 t 0 0 0 0 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift1 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=17; shift=1; ncol=18; -rmmGCsGCGGCGGsGrg ; Alignment reference a 0 48 46 52 6 2 5 4 7 2 5 6 4 5 7 7 31 26 c 0 29 48 40 10 111 81 1 99 18 2 90 7 5 34 19 21 19 g 0 42 21 26 103 9 33 116 11 99 113 12 108 110 68 84 52 55 t 0 4 8 5 4 1 4 2 6 4 3 15 4 3 14 13 19 23
MA1721.2_shift0 (ZNF93)				; oligos_7nt_mkv2_m2 versus MA1721.2 (ZNF93); m=1/9; ncol2=14; w=-1; offset=-1; strand=D; shift=0; score=0.569225; gGyrkCrGCAGCGG---- ; cor=; Ncor= a 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0 0 0 0 0 c 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0 0 0 0 0 g 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0 0 0 0 0 t 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0 0 0 0 0
MA1961.2_shift6 (PATZ1)				; oligos_7nt_mkv2_m2 versus MA1961.2 (PATZ1); m=2/9; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.512935; ------sGGGGmGGGGs- ; cor=; Ncor= a 0 0 0 0 0 0 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 c 0 0 0 0 0 0 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 g 0 0 0 0 0 0 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 t 0 0 0 0 0 0 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0
MA0751.2_rc_shift6 (ZIC4_rc)				; oligos_7nt_mkv2_m2 versus MA0751.2_rc (ZIC4_rc); m=3/9; ncol2=14; w=0; offset=5; strand=R; shift=6; score=0.454827; ------CrCmrCrGGGGG ; cor=; Ncor= a 0 0 0 0 0 0 1156.0 1454.0 67.0 3488.0 1017.0 69.0 1078.0 11.0 1.0 275.0 147.0 98.0 c 0 0 0 0 0 0 4522.0 599.0 5086.0 1903.0 252.0 4795.0 6.0 0.0 0.0 225.0 121.0 52.0 g 0 0 0 0 0 0 452.0 1044.0 18.0 865.0 2279.0 68.0 2222.0 2985.0 2999.0 2757.0 2890.0 2870.0 t 0 0 0 0 0 0 74.0 704.0 258.0 1052.0 24.0 1095.0 24.0 114.0 8.0 614.0 209.0 315.0
MA0516.3_shift7 (SP2)				; oligos_7nt_mkv2_m2 versus MA0516.3 (SP2); m=4/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.43563; -------GGGGCGGGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 c 0 0 0 0 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 g 0 0 0 0 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 t 0 0 0 0 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0
MA0079.5_shift7 (SP1)				; oligos_7nt_mkv2_m2 versus MA0079.5 (SP1); m=5/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.42991; -------GGGGMGGrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 c 0 0 0 0 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 g 0 0 0 0 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 t 0 0 0 0 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0
MA0742.2_shift7 (KLF12)				; oligos_7nt_mkv2_m2 versus MA0742.2 (KLF12); m=6/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.422295; -------GGGGCGGGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 c 0 0 0 0 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 g 0 0 0 0 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 t 0 0 0 0 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0
MA1511.2_shift7 (KLF10)				; oligos_7nt_mkv2_m2 versus MA1511.2 (KLF10); m=7/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.419601; -------GGGGCGKGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 c 0 0 0 0 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 g 0 0 0 0 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 t 0 0 0 0 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0
MA0685.2_shift7 (SP4)				; oligos_7nt_mkv2_m2 versus MA0685.2 (SP4); m=8/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.41351; -------gGGGMGGrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 c 0 0 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 g 0 0 0 0 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 t 0 0 0 0 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0
MA0740.2_shift7 (KLF14)				; oligos_7nt_mkv2_m2 versus MA0740.2 (KLF14); m=9/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.402598; -------kGGGCGKGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 c 0 0 0 0 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 g 0 0 0 0 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 t 0 0 0 0 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0