One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift4 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift4 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=4; ncol=16; ----cwGCCTCCCArv ; Alignment reference a 0 0 0 0 21 31 8 5 2 3 3 3 1 83 34 32 c 0 0 0 0 45 25 10 93 101 2 101 103 101 7 24 32 g 0 0 0 0 22 20 83 6 4 2 2 1 5 7 27 27 t 0 0 0 0 20 32 7 4 1 101 2 1 1 11 23 17

MA1596.1_shift0 (ZNF460)
; oligos_7nt_mkv2_m5 versus MA1596.1 (ZNF460); m=1/9; ncol2=16; w=-4; offset=-4; strand=D; shift=0; score=0.658212; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0

MA2099.1_shift4 (ZNF770)
; oligos_7nt_mkv2_m5 versus MA2099.1 (ZNF770); m=2/9; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.543107; ----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0

MA1627.2_shift7 (Wt1)
; oligos_7nt_mkv2_m5 versus MA1627.2 (Wt1); m=3/9; ncol2=10; w=0; offset=3; strand=D; shift=7; score=0.538556; -------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0

MA1522.2_shift5 (MAZ)
; oligos_7nt_mkv2_m5 versus MA1522.2 (MAZ); m=4/9; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.506561; -----CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0

MA1965.2_shift7 (SP5)
; oligos_7nt_mkv2_m5 versus MA1965.2 (SP5); m=5/9; ncol2=6; w=0; offset=3; strand=D; shift=7; score=0.499282; -------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0

MA0528.3_rc_shift6 (ZNF263_rc)
; oligos_7nt_mkv2_m5 versus MA0528.3_rc (ZNF263_rc); m=6/9; ncol2=7; w=0; offset=2; strand=R; shift=6; score=0.493081; ------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0

MA2125.1_shift8 (Zfp809)
; oligos_7nt_mkv2_m5 versus MA2125.1 (Zfp809); m=7/9; ncol2=9; w=0; offset=4; strand=D; shift=8; score=0.453735; --------wTCCCAGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 c 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 g 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 t 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0

MA1723.2_rc_shift1 (PRDM9_rc)
; oligos_7nt_mkv2_m5 versus MA1723.2_rc (PRDM9_rc); m=8/9; ncol2=20; w=-3; offset=-3; strand=R; shift=1; score=0.434406; -yTkyykCCyCCcTkc ; cor=; Ncor= a 0 29.0 46.0 204.0 186.0 151.0 151.0 2.0 2.0 116.0 37.0 11.0 107.0 11.0 107.0 213.0 c 0 572.0 169.0 107.0 441.0 274.0 204.0 976.0 993.0 344.0 932.0 853.0 529.0 204.0 213.0 485.0 g 0 81.0 2.0 423.0 2.0 178.0 292.0 2.0 2.0 90.0 2.0 11.0 204.0 11.0 379.0 169.0 t 0 318.0 783.0 265.0 371.0 397.0 353.0 20.0 2.0 450.0 29.0 125.0 160.0 774.0 300.0 134.0

MA1710.2_rc_shift1 (ZNF257_rc)
; oligos_7nt_mkv2_m5 versus MA1710.2_rc (ZNF257_rc); m=9/9; ncol2=10; w=-3; offset=-3; strand=R; shift=1; score=0.410747; -cyCTygCCTC----- ; cor=; Ncor= a 0 162.0 1.0 1.0 1.0 1.0 124.0 1.0 1.0 74.0 1.0 0 0 0 0 0 c 0 625.0 480.0 997.0 166.0 396.0 1.0 997.0 997.0 1.0 997.0 0 0 0 0 0 g 0 101.0 85.0 1.0 1.0 55.0 637.0 1.0 1.0 1.0 1.0 0 0 0 0 0 t 0 112.0 434.0 1.0 832.0 549.0 239.0 1.0 1.0 924.0 1.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m5_shift4 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=4; ncol=16; ----cwGCCTCCCArv ; Alignment reference a 0 0 0 0 21 31 8 5 2 3 3 3 1 83 34 32 c 0 0 0 0 45 25 10 93 101 2 101 103 101 7 24 32 g 0 0 0 0 22 20 83 6 4 2 2 1 5 7 27 27 t 0 0 0 0 20 32 7 4 1 101 2 1 1 11 23 17
MA1596.1_shift0 (ZNF460)				; oligos_7nt_mkv2_m5 versus MA1596.1 (ZNF460); m=1/9; ncol2=16; w=-4; offset=-4; strand=D; shift=0; score=0.658212; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0
MA2099.1_shift4 (ZNF770)				; oligos_7nt_mkv2_m5 versus MA2099.1 (ZNF770); m=2/9; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.543107; ----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0
MA1627.2_shift7 (Wt1)				; oligos_7nt_mkv2_m5 versus MA1627.2 (Wt1); m=3/9; ncol2=10; w=0; offset=3; strand=D; shift=7; score=0.538556; -------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0
MA1522.2_shift5 (MAZ)				; oligos_7nt_mkv2_m5 versus MA1522.2 (MAZ); m=4/9; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.506561; -----CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA1965.2_shift7 (SP5)				; oligos_7nt_mkv2_m5 versus MA1965.2 (SP5); m=5/9; ncol2=6; w=0; offset=3; strand=D; shift=7; score=0.499282; -------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0
MA0528.3_rc_shift6 (ZNF263_rc)				; oligos_7nt_mkv2_m5 versus MA0528.3_rc (ZNF263_rc); m=6/9; ncol2=7; w=0; offset=2; strand=R; shift=6; score=0.493081; ------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0
MA2125.1_shift8 (Zfp809)				; oligos_7nt_mkv2_m5 versus MA2125.1 (Zfp809); m=7/9; ncol2=9; w=0; offset=4; strand=D; shift=8; score=0.453735; --------wTCCCAGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 c 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 g 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 t 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0
MA1723.2_rc_shift1 (PRDM9_rc)				; oligos_7nt_mkv2_m5 versus MA1723.2_rc (PRDM9_rc); m=8/9; ncol2=20; w=-3; offset=-3; strand=R; shift=1; score=0.434406; -yTkyykCCyCCcTkc ; cor=; Ncor= a 0 29.0 46.0 204.0 186.0 151.0 151.0 2.0 2.0 116.0 37.0 11.0 107.0 11.0 107.0 213.0 c 0 572.0 169.0 107.0 441.0 274.0 204.0 976.0 993.0 344.0 932.0 853.0 529.0 204.0 213.0 485.0 g 0 81.0 2.0 423.0 2.0 178.0 292.0 2.0 2.0 90.0 2.0 11.0 204.0 11.0 379.0 169.0 t 0 318.0 783.0 265.0 371.0 397.0 353.0 20.0 2.0 450.0 29.0 125.0 160.0 774.0 300.0 134.0
MA1710.2_rc_shift1 (ZNF257_rc)				; oligos_7nt_mkv2_m5 versus MA1710.2_rc (ZNF257_rc); m=9/9; ncol2=10; w=-3; offset=-3; strand=R; shift=1; score=0.410747; -cyCTygCCTC----- ; cor=; Ncor= a 0 162.0 1.0 1.0 1.0 1.0 124.0 1.0 1.0 74.0 1.0 0 0 0 0 0 c 0 625.0 480.0 997.0 166.0 396.0 1.0 997.0 997.0 1.0 997.0 0 0 0 0 0 g 0 101.0 85.0 1.0 1.0 55.0 637.0 1.0 1.0 1.0 1.0 0 0 0 0 0 t 0 112.0 434.0 1.0 832.0 549.0 239.0 1.0 1.0 924.0 1.0 0 0 0 0 0