/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	18	98
		file1	2	11	171
		file1	3	10	132
		file1	4	11	146
		file1	5	13	108
		file1	6	20	91
		file1	7	17	123
		file1	8	12	145
		file1	9	11	82
		file1	10	12	108
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		18		98
		file2		2		11		171
		file2		3		10		132
		file2		4		11		146
		file2		5		13		108
		file2		6		20		91
		file2		7		17		123
		file2		8		12		145
		file2		9		11		82
		file2		10		12		108
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.988 0.889 20 18 18 20 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.988 0.889 18 20 18 20 0.9000 1.0000 0.9000 D -1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 0.959 0.879 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 0.959 0.879 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 0.948 0.869 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 0.948 0.869 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 0.926 0.787 17 20 17 20 0.8500 1.0000 0.8500 D -3
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 0.926 0.787 20 17 17 20 0.8500 0.8500 1.0000 D 3
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.929 0.783 17 18 16 19 0.8421 0.9412 0.8889 D -2
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.929 0.783 18 17 16 19 0.8421 0.8889 0.9412 D 2
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 0.724 0.658 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 0.724 0.658 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 0.706 0.499 17 12 12 17 0.7059 0.7059 1.0000 R 5
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 0.706 0.499 12 17 12 17 0.7059 1.0000 0.7059 R 0
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 0.756 0.489 11 17 11 17 0.6471 1.0000 0.6471 R 0
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 0.756 0.489 17 11 11 17 0.6471 0.6471 1.0000 R 6 
 Host name	rsat
 Job started	2025-05-16.184223
 Job done	2025-05-16.184228
 Seconds	0.24
	user	0.24
	system	0.15
	cuser	4.63
;	csystem	0.68