One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184201_2025-05-16.184201_aBOVlS/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift2 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift2 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=12; shift=2; ncol=14; --ccCCCCACCCcs ; Alignment reference a 0 0 26 31 0 9 5 4 108 4 2 11 35 19 c 0 0 55 43 133 127 133 133 8 132 131 102 57 52 g 0 0 34 35 7 6 3 3 16 7 6 21 21 46 t 0 0 30 36 5 3 4 5 13 2 6 11 32 28

MA1961.2_rc_shift3 (PATZ1_rc)
; oligos_7nt_mkv2_m3 versus MA1961.2_rc (PATZ1_rc); m=1/32; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.826243; ---sCCCCkCCCCs ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0

MA0599.1_shift3 (KLF5)
; oligos_7nt_mkv2_m3 versus MA0599.1 (KLF5); m=2/32; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.77174; ---gCCMCrCCCh- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0

MA1653.2_shift4 (ZNF148)
; oligos_7nt_mkv2_m3 versus MA1653.2 (ZNF148); m=3/32; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.710226; ----CCCCTCCCcc ; cor=; Ncor= a 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0

MA1107.3_shift3 (KLF9)
; oligos_7nt_mkv2_m3 versus MA1107.3 (KLF9); m=4/32; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.688515; ---gCCACACCCAC ; cor=; Ncor= a 0 0 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 c 0 0 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 g 0 0 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 t 0 0 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0

MA0741.1_shift3 (KLF16)
; oligos_7nt_mkv2_m3 versus MA0741.1 (KLF16); m=5/32; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.685959; ---gmCMCgCCCMC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0

MA1630.3_rc_shift4 (ZNF281_rc)
; oligos_7nt_mkv2_m3 versus MA1630.3_rc (ZNF281_rc); m=6/32; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.684942; ----CCCCTCCCCC ; cor=; Ncor= a 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 c 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 g 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 t 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0

MA0753.3_shift4 (ZNF740)
; oligos_7nt_mkv2_m3 versus MA0753.3 (ZNF740); m=7/32; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.676299; ----CCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0

MA0746.3_shift3 (SP3)
; oligos_7nt_mkv2_m3 versus MA0746.3 (SP3); m=8/32; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.660427; ---rCCACGCCCmC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0

MA0039.5_shift4 (KLF4)
; oligos_7nt_mkv2_m3 versus MA0039.5 (KLF4); m=9/32; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.658739; ----CCCCACCC-- ; cor=; Ncor= a 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_7nt_mkv2_m3 versus MA1511.2_rc (KLF10_rc); m=10/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.647408; ----CCMCGCCCC- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0

MA0685.2_rc_shift4 (SP4_rc)
; oligos_7nt_mkv2_m3 versus MA0685.2_rc (SP4_rc); m=11/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.645735; ----CyCCKCCCc- ; cor=; Ncor= a 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 c 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 g 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 t 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_7nt_mkv2_m3 versus MA0740.2_rc (KLF14_rc); m=12/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.638374; ----CCMCGCCCm- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_7nt_mkv2_m3 versus MA0742.2_rc (KLF12_rc); m=13/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.630805; ----CCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0

MA0516.3_rc_shift4 (SP2_rc)
; oligos_7nt_mkv2_m3 versus MA0516.3_rc (SP2_rc); m=14/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.622945; ----cCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0

MA1564.2_shift4 (SP9)
; oligos_7nt_mkv2_m3 versus MA1564.2 (SP9); m=15/32; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.622863; ----cCmCGCCCmc ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0

MA0079.5_rc_shift4 (SP1_rc)
; oligos_7nt_mkv2_m3 versus MA0079.5_rc (SP1_rc); m=16/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.621742; ----CyCCKCCCC- ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0

MA0493.3_rc_shift4 (KLF1_rc)
; oligos_7nt_mkv2_m3 versus MA0493.3_rc (KLF1_rc); m=17/32; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.619521; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0

MA1512.2_shift4 (KLF11)
; oligos_7nt_mkv2_m3 versus MA1512.2 (KLF11); m=18/32; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.594504; ----cCACGCCCmC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0

MA1959.2_rc_shift4 (KLF7_rc)
; oligos_7nt_mkv2_m3 versus MA1959.2_rc (KLF7_rc); m=19/32; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.582006; ----CcMCGCCC-- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0

MA1522.2_shift4 (MAZ)
; oligos_7nt_mkv2_m3 versus MA1522.2 (MAZ); m=20/32; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.566925; ----CCCCTCCc-- ; cor=; Ncor= a 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 c 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 g 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 t 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0

MA1515.2_shift4 (KLF2)
; oligos_7nt_mkv2_m3 versus MA1515.2 (KLF2); m=21/32; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.564037; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0

MA1517.2_shift4 (KLF6)
; oligos_7nt_mkv2_m3 versus MA1517.2 (KLF6); m=22/32; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.55775; ----cCACRCCCm- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0

MA0747.2_shift4 (SP8)
; oligos_7nt_mkv2_m3 versus MA0747.2 (SP8); m=23/32; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.555702; ----mCACgCCCmC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0

MA1513.2_shift4 (KLF15)
; oligos_7nt_mkv2_m3 versus MA1513.2 (KLF15); m=24/32; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.550235; ----cCCCGCCC-- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0

MA1627.2_shift0 (Wt1)
; oligos_7nt_mkv2_m3 versus MA1627.2 (Wt1); m=25/32; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.471394; cCTCCCCCAC---- ; cor=; Ncor= a 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 0 0 0 0 c 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 0 0 0 0 g 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 0 0 0 0 t 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 0 0 0 0

MA1578.2_shift2 (VEZF1)
; oligos_7nt_mkv2_m3 versus MA1578.2 (VEZF1); m=26/32; ncol2=6; w=0; offset=0; strand=D; shift=2; score=0.443751; --CCCCCC------ ; cor=; Ncor= a 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 0 0 c 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 0 0 g 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0 0 0

MA1615.2_rc_shift1 (Plagl1_rc)
; oligos_7nt_mkv2_m3 versus MA1615.2_rc (Plagl1_rc); m=27/32; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.441894; -TGGCCCCa----- ; cor=; Ncor= a 0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 0 c 0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 0 g 0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 0 t 0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0 0

MA0056.3_shift1 (MZF1)
; oligos_7nt_mkv2_m3 versus MA0056.3 (MZF1); m=28/32; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.441538; -AATCCCCA----- ; cor=; Ncor= a 0 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 0 0 0 0 0 c 0 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 0 0 0 0 0 g 0 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 0 0 0 0 0 t 0 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 0 0 0 0 0

MA1715.1_shift4 (ZNF707)
; oligos_7nt_mkv2_m3 versus MA1715.1 (ZNF707); m=29/32; ncol2=15; w=0; offset=2; strand=D; shift=4; score=0.42175; ----CCCCACTYCT ; cor=; Ncor= a 0 0 0 0 37.0 37.0 12.0 41.0 1109.0 9.0 5.0 4.0 12.0 17.0 c 0 0 0 0 960.0 1057.0 1109.0 1044.0 5.0 1111.0 11.0 821.0 1079.0 83.0 g 0 0 0 0 34.0 31.0 9.0 8.0 17.0 5.0 2.0 11.0 9.0 5.0 t 0 0 0 0 126.0 32.0 27.0 64.0 26.0 32.0 1139.0 321.0 57.0 1052.0

MA0595.1_shift0 (SREBF1)
; oligos_7nt_mkv2_m3 versus MA0595.1 (SREBF1); m=30/32; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.411654; rTCACcCCAy---- ; cor=; Ncor= a 28.0 0.0 0.0 58.0 0.0 6.0 0.0 2.0 58.0 0.0 0 0 0 0 c 14.0 0.0 58.0 0.0 51.0 38.0 44.0 45.0 0.0 26.0 0 0 0 0 g 16.0 0.0 0.0 0.0 7.0 13.0 0.0 11.0 0.0 7.0 0 0 0 0 t 0.0 58.0 0.0 0.0 0.0 1.0 14.0 0.0 0.0 25.0 0 0 0 0

MA2328.1_shift0 (ZBED4)
; oligos_7nt_mkv2_m3 versus MA2328.1 (ZBED4); m=31/32; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.405799; CcCGCyCCGC---- ; cor=; Ncor= a 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 0 0 0 c 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 0 0 0 g 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 0 0 0 t 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0 0 0 0

MA1965.2_shift6 (SP5)
; oligos_7nt_mkv2_m3 versus MA1965.2 (SP5); m=32/32; ncol2=6; w=0; offset=4; strand=D; shift=6; score=0.403981; ------CCTCCC-- ; cor=; Ncor= a 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift1 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -mkCCCAGChy ; Alignment reference a 0 35 32 2 3 0 121 1 0 34 29 c 0 42 23 128 126 119 7 4 130 35 39 g 0 26 37 0 3 5 4 125 0 26 27 t 0 29 40 2 0 8 0 2 2 37 37

MA2125.1_shift1 (Zfp809)
; oligos_6nt_mkv2_m3 versus MA2125.1 (Zfp809); m=1/14; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.79132; -wTCCCAGCc- ; cor=; Ncor= a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0

MA1979.2_rc_shift1 (ZNF416_rc)
; oligos_6nt_mkv2_m3 versus MA1979.2_rc (ZNF416_rc); m=2/14; ncol2=10; w=0; offset=0; strand=R; shift=1; score=0.705555; -tGCCCAGAtA ; cor=; Ncor= a 0 66.0 18.0 3.0 3.0 2.0 336.0 3.0 254.0 46.0 240.0 c 0 29.0 3.0 341.0 335.0 335.0 1.0 7.0 15.0 77.0 26.0 g 0 38.0 320.0 1.0 5.0 7.0 6.0 334.0 28.0 25.0 32.0 t 0 212.0 4.0 0.0 2.0 1.0 2.0 1.0 48.0 197.0 47.0

MA2341.1_shift3 (FEZF2)
; oligos_6nt_mkv2_m3 versus MA2341.1 (FEZF2); m=3/14; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.67802; ---CCCAGCCT ; cor=; Ncor= a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0

MA1656.2_shift0 (ZNF449)
; oligos_6nt_mkv2_m3 versus MA1656.2 (ZNF449); m=4/14; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.576954; aAGCCCAACc- ; cor=; Ncor= a 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 0 c 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 0 g 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 0 t 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 0

MA1629.2_shift3 (Zic2)
; oligos_6nt_mkv2_m3 versus MA1629.2 (Zic2); m=5/14; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.52618; ---CaCAGCAG ; cor=; Ncor= a 0 0 0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 c 0 0 0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 g 0 0 0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 t 0 0 0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0

MA1116.2_rc_shift1 (RBPJ_rc)
; oligos_6nt_mkv2_m3 versus MA1116.2_rc (RBPJ_rc); m=6/14; ncol2=6; w=0; offset=0; strand=R; shift=1; score=0.487566; -TTCCCA---- ; cor=; Ncor= a 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 0 0 c 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 0 0 g 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 0 0 t 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0 0 0

MA1997.2_shift5 (Olig2)
; oligos_6nt_mkv2_m3 versus MA1997.2 (Olig2); m=7/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.486587; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 c 0 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 g 0 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 t 0 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0

MA0633.3_rc_shift5 (Twist2_rc)
; oligos_6nt_mkv2_m3 versus MA0633.3_rc (Twist2_rc); m=8/14; ncol2=6; w=0; offset=4; strand=R; shift=5; score=0.486217; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 15.0 48918.0 9.0 21.0 0.0 60.0 c 0 0 0 0 0 49473.0 342.0 16.0 49583.0 369.0 81.0 g 0 0 0 0 0 81.0 369.0 49583.0 16.0 345.0 49473.0 t 0 0 0 0 0 60.0 0.0 21.0 9.0 48915.0 15.0

MA1993.2_shift5 (Neurod2)
; oligos_6nt_mkv2_m3 versus MA1993.2 (Neurod2); m=9/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.486131; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 c 0 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 g 0 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 t 0 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0

MA1635.2_shift5 (BHLHE22)
; oligos_6nt_mkv2_m3 versus MA1635.2 (BHLHE22); m=10/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.485288; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 c 0 0 0 0 0 18331.0 37.0 53.0 18288.0 52.0 15.0 g 0 0 0 0 0 11.0 52.0 18288.0 53.0 37.0 18327.0 t 0 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0

MA0521.3_shift5 (Tcf12)
; oligos_6nt_mkv2_m3 versus MA0521.3 (Tcf12); m=11/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.480464; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 367.0 72283.0 836.0 1565.0 341.0 549.0 c 0 0 0 0 0 72674.0 739.0 1814.0 69780.0 632.0 402.0 g 0 0 0 0 0 404.0 632.0 69780.0 1814.0 738.0 72670.0 t 0 0 0 0 0 550.0 341.0 1565.0 836.0 72284.0 374.0

MA1986.2_shift0 (ZNF692)
; oligos_6nt_mkv2_m3 versus MA1986.2 (ZNF692); m=12/14; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.465832; gGGCCCAs--- ; cor=; Ncor= a 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 852.0 0 0 0 c 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 4998.0 0 0 0 g 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 3703.0 0 0 0 t 1195.0 13.0 26.0 22.0 17.0 21.0 0.0 1192.0 0 0 0

MA0697.3_shift5 (Zic3)
; oligos_6nt_mkv2_m3 versus MA0697.3 (Zic3); m=13/14; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.444182; -----CAGCAG ; cor=; Ncor= a 0 0 0 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 c 0 0 0 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 g 0 0 0 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 t 0 0 0 0 0 334.0 596.0 266.0 792.0 858.0 967.0

MA1628.2_shift5 (Zic1::Zic2)
; oligos_6nt_mkv2_m3 versus MA1628.2 (Zic1::Zic2); m=14/14; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.443478; -----CAGCAG ; cor=; Ncor= a 0 0 0 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 c 0 0 0 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 g 0 0 0 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 t 0 0 0 0 0 163.0 4.0 74.0 428.0 4.0 90.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift3 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---cccCCCACCsc ; Alignment reference a 0 0 0 36 25 13 10 2 5 126 1 0 36 29 c 0 0 0 48 58 95 124 140 132 1 142 136 38 57 g 0 0 0 33 32 17 10 3 6 17 3 8 43 29 t 0 0 0 29 31 21 2 1 3 2 0 2 29 31

MA0599.1_shift4 (KLF5)
; oligos_6nt_mkv2_m4 versus MA0599.1 (KLF5); m=1/29; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.749731; ----gCCMCrCCCh ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0

MA1961.2_rc_shift4 (PATZ1_rc)
; oligos_6nt_mkv2_m4 versus MA1961.2_rc (PATZ1_rc); m=2/29; ncol2=11; w=0; offset=1; strand=R; shift=4; score=0.70489; ----sCCCCkCCCC ; cor=; Ncor= a 0 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0

MA0753.3_shift4 (ZNF740)
; oligos_6nt_mkv2_m4 versus MA0753.3 (ZNF740); m=3/29; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.678611; ----CCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0

MA0039.5_shift5 (KLF4)
; oligos_6nt_mkv2_m4 versus MA0039.5 (KLF4); m=4/29; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.665909; -----CCCCACCC- ; cor=; Ncor= a 0 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 c 0 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 g 0 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 t 0 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0

MA0516.3_rc_shift5 (SP2_rc)
; oligos_6nt_mkv2_m4 versus MA0516.3_rc (SP2_rc); m=5/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.632792; -----cCCCGCCCC ; cor=; Ncor= a 0 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 c 0 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 g 0 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 t 0 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226

MA1511.2_rc_shift5 (KLF10_rc)
; oligos_6nt_mkv2_m4 versus MA1511.2_rc (KLF10_rc); m=6/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.627934; -----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427

MA0740.2_rc_shift5 (KLF14_rc)
; oligos_6nt_mkv2_m4 versus MA0740.2_rc (KLF14_rc); m=7/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.620225; -----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158

MA0685.2_rc_shift5 (SP4_rc)
; oligos_6nt_mkv2_m4 versus MA0685.2_rc (SP4_rc); m=8/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.61366; -----CyCCKCCCc ; cor=; Ncor= a 0 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 c 0 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 g 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 t 0 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038

MA0742.2_rc_shift5 (KLF12_rc)
; oligos_6nt_mkv2_m4 versus MA0742.2_rc (KLF12_rc); m=9/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.610243; -----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948

MA0079.5_rc_shift5 (SP1_rc)
; oligos_6nt_mkv2_m4 versus MA0079.5_rc (SP1_rc); m=10/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.600752; -----CyCCKCCCC ; cor=; Ncor= a 0 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 c 0 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 g 0 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 t 0 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485

MA0493.3_rc_shift5 (KLF1_rc)
; oligos_6nt_mkv2_m4 versus MA0493.3_rc (KLF1_rc); m=11/29; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.59895; -----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0

MA1653.2_shift5 (ZNF148)
; oligos_6nt_mkv2_m4 versus MA1653.2 (ZNF148); m=12/29; ncol2=10; w=0; offset=2; strand=D; shift=5; score=0.570804; -----CCCCTCCCc ; cor=; Ncor= a 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 c 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 g 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 t 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0

MA1630.3_rc_shift5 (ZNF281_rc)
; oligos_6nt_mkv2_m4 versus MA1630.3_rc (ZNF281_rc); m=13/29; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.567595; -----CCCCTCCCC ; cor=; Ncor= a 0 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 c 0 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 g 0 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 t 0 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0

MA1522.2_shift5 (MAZ)
; oligos_6nt_mkv2_m4 versus MA1522.2 (MAZ); m=14/29; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.565383; -----CCCCTCCc- ; cor=; Ncor= a 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 c 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 g 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 t 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0

MA1959.2_rc_shift5 (KLF7_rc)
; oligos_6nt_mkv2_m4 versus MA1959.2_rc (KLF7_rc); m=15/29; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.555185; -----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0

MA0695.2_shift4 (ZBTB7C)
; oligos_6nt_mkv2_m4 versus MA0695.2 (ZBTB7C); m=16/29; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.554886; ----cgACCACC-- ; cor=; Ncor= a 0 0 0 0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 0 0 c 0 0 0 0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 0 0 g 0 0 0 0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 0 0 t 0 0 0 0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 0 0

MA1515.2_shift5 (KLF2)
; oligos_6nt_mkv2_m4 versus MA1515.2 (KLF2); m=17/29; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.54962; -----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0

MA1513.2_shift5 (KLF15)
; oligos_6nt_mkv2_m4 versus MA1513.2 (KLF15); m=18/29; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.548391; -----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0

MA0735.2_shift0 (GLIS1)
; oligos_6nt_mkv2_m4 versus MA0735.2 (GLIS1); m=19/29; ncol2=15; w=-3; offset=-3; strand=D; shift=0; score=0.515586; mGACCCCCCACGWw ; cor=; Ncor= a 3236.0 3.0 6314.0 0.0 4.0 0.0 3.0 0.0 6.0 6781.0 0.0 7.0 5759.0 2846.0 c 1842.0 44.0 0.0 4807.0 4769.0 4796.0 4817.0 4702.0 4505.0 3.0 4549.0 0.0 4.0 1340.0 g 100.0 8617.0 6.0 2.0 2.0 11.0 5.0 0.0 5.0 160.0 0.0 10081.0 32.0 0.0 t 891.0 1016.0 8.0 0.0 3.0 0.0 2.0 7.0 2.0 6.0 0.0 51.0 2024.0 2786.0

MA0471.3_rc_shift4 (E2F6_rc)
; oligos_6nt_mkv2_m4 versus MA0471.3_rc (E2F6_rc); m=20/29; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.512485; ----TTCCCGCC-- ; cor=; Ncor= a 0 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 c 0 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 g 0 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 t 0 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0

MA1627.2_shift1 (Wt1)
; oligos_6nt_mkv2_m4 versus MA1627.2 (Wt1); m=21/29; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.506778; -cCTCCCCCAC--- ; cor=; Ncor= a 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 0 0 0 c 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 0 0 0 g 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 0 0 0 t 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 0 0 0

MA1578.2_shift3 (VEZF1)
; oligos_6nt_mkv2_m4 versus MA1578.2 (VEZF1); m=22/29; ncol2=6; w=0; offset=0; strand=D; shift=3; score=0.487561; ---CCCCCC----- ; cor=; Ncor= a 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 0 c 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 0 g 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0 0

MA0056.3_shift2 (MZF1)
; oligos_6nt_mkv2_m4 versus MA0056.3 (MZF1); m=23/29; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.46601; --AATCCCCA---- ; cor=; Ncor= a 0 0 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 0 0 0 0 c 0 0 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 0 0 0 0 g 0 0 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 0 0 0 0 t 0 0 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 0 0 0 0

MA1615.2_rc_shift2 (Plagl1_rc)
; oligos_6nt_mkv2_m4 versus MA1615.2_rc (Plagl1_rc); m=24/29; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.454638; --TGGCCCCa---- ; cor=; Ncor= a 0 0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 c 0 0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 g 0 0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 t 0 0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0

MA0130.1_shift5 (ZNF354C)
; oligos_6nt_mkv2_m4 versus MA0130.1 (ZNF354C); m=25/29; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.437482; -----mTCCAC--- ; cor=; Ncor= a 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 c 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0

MA1512.2_shift1 (KLF11)
; oligos_6nt_mkv2_m4 versus MA1512.2 (KLF11); m=26/29; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.432806; -cCACGCCCmC--- ; cor=; Ncor= a 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0

MA1107.3_shift0 (KLF9)
; oligos_6nt_mkv2_m4 versus MA1107.3 (KLF9); m=27/29; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.427338; gCCACACCCAC--- ; cor=; Ncor= a 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 0 0 0 c 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 0 0 0 g 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 0 0 0 t 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 0 0 0

MA0103.4_shift8 (ZEB1)
; oligos_6nt_mkv2_m4 versus MA0103.4 (ZEB1); m=28/29; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.426395; --------CACCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 114.0 19905.0 32.0 193.0 4.0 441.0 c 0 0 0 0 0 0 0 0 19195.0 0.0 19878.0 19257.0 501.0 178.0 g 0 0 0 0 0 0 0 0 158.0 223.0 97.0 649.0 355.0 19381.0 t 0 0 0 0 0 0 0 0 662.0 1.0 122.0 30.0 19269.0 129.0

MA0820.2_shift8 (FIGLA)
; oligos_6nt_mkv2_m4 versus MA0820.2 (FIGLA); m=29/29; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.403384; --------CACCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 1780.0 0.0 9.0 56.0 36.0 c 0 0 0 0 0 0 0 0 1780.0 46.0 1780.0 1780.0 0.0 33.0 g 0 0 0 0 0 0 0 0 0.0 0.0 527.0 311.0 17.0 1780.0 t 0 0 0 0 0 0 0 0 29.0 14.0 0.0 0.0 1780.0 65.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift6 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift6 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=6; ncol=17; ------wsCCTCCCAmy ; Alignment reference a 0 0 0 0 0 0 47 37 6 6 10 5 7 5 119 48 41 c 0 0 0 0 0 0 39 43 162 158 0 160 158 158 14 50 56 g 0 0 0 0 0 0 31 50 1 4 6 0 3 4 7 41 31 t 0 0 0 0 0 0 54 41 2 3 155 6 3 4 31 32 43

MA1653.2_shift6 (ZNF148)
; oligos_6nt_mkv2_m2 versus MA1653.2 (ZNF148); m=1/22; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.693167; ------CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA1522.2_shift6 (MAZ)
; oligos_6nt_mkv2_m2 versus MA1522.2 (MAZ); m=2/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.602709; ------CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0

MA0685.2_rc_shift6 (SP4_rc)
; oligos_6nt_mkv2_m2 versus MA0685.2_rc (SP4_rc); m=3/22; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.593982; ------CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA0734.4_shift6 (Gli2)
; oligos_6nt_mkv2_m2 versus MA0734.4 (Gli2); m=4/22; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.592445; ------GACCACCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 60.0 1920.0 44.0 8.0 2216.0 9.0 313.0 59.0 2101.0 0 0 c 0 0 0 0 0 0 96.0 227.0 2404.0 2464.0 40.0 2451.0 2145.0 2288.0 85.0 0 0 g 0 0 0 0 0 0 2251.0 337.0 27.0 13.0 82.0 12.0 20.0 77.0 193.0 0 0 t 0 0 0 0 0 0 85.0 8.0 17.0 7.0 154.0 20.0 14.0 68.0 113.0 0 0

MA1627.2_shift8 (Wt1)
; oligos_6nt_mkv2_m2 versus MA1627.2 (Wt1); m=5/22; ncol2=10; w=0; offset=2; strand=D; shift=8; score=0.588634; --------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0

MA0528.3_rc_shift7 (ZNF263_rc)
; oligos_6nt_mkv2_m2 versus MA0528.3_rc (ZNF263_rc); m=6/22; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.587921; -------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0

MA1596.1_shift1 (ZNF460)
; oligos_6nt_mkv2_m2 versus MA1596.1 (ZNF460); m=7/22; ncol2=16; w=-5; offset=-5; strand=D; shift=1; score=0.574004; -rCCTCmGCCTCCCrrG ; cor=; Ncor= a 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0

MA0599.1_shift5 (KLF5)
; oligos_6nt_mkv2_m2 versus MA0599.1 (KLF5); m=8/22; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.557632; -----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA1965.2_shift8 (SP5)
; oligos_6nt_mkv2_m2 versus MA1965.2 (SP5); m=9/22; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.545102; --------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0

MA1990.2_shift5 (Gli1)
; oligos_6nt_mkv2_m2 versus MA1990.2 (Gli1); m=10/22; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score= 0.5304; -----rGACCACCCA-- ; cor=; Ncor= a 0 0 0 0 0 2124.0 113.0 3120.0 100.0 71.0 3653.0 38.0 559.0 153.0 3312.0 0 0 c 0 0 0 0 0 299.0 193.0 331.0 3744.0 3809.0 73.0 3827.0 3231.0 3566.0 188.0 0 0 g 0 0 0 0 0 1104.0 3535.0 498.0 88.0 74.0 87.0 75.0 145.0 110.0 251.0 0 0 t 0 0 0 0 0 476.0 162.0 54.0 71.0 49.0 190.0 63.0 68.0 174.0 252.0 0 0

MA0493.3_rc_shift6 (KLF1_rc)
; oligos_6nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=11/22; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.517379; ------CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA1959.2_rc_shift6 (KLF7_rc)
; oligos_6nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=12/22; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.515691; ------CcMCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA1513.2_shift6 (KLF15)
; oligos_6nt_mkv2_m2 versus MA1513.2 (KLF15); m=13/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.51494; ------cCCCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA0039.5_shift6 (KLF4)
; oligos_6nt_mkv2_m2 versus MA0039.5 (KLF4); m=14/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.511856; ------CCCCACCC--- ; cor=; Ncor= a 0 0 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0

MA2125.1_shift9 (Zfp809)
; oligos_6nt_mkv2_m2 versus MA2125.1 (Zfp809); m=15/22; ncol2=9; w=0; offset=3; strand=D; shift=9; score=0.487859; ---------wTCCCAGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 c 0 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 g 0 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 t 0 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0

MA1587.1_shift2 (ZNF135)
; oligos_6nt_mkv2_m2 versus MA1587.1 (ZNF135); m=16/22; ncol2=14; w=-4; offset=-4; strand=D; shift=2; score=0.485995; --cCTCGACCTCCyrr- ; cor=; Ncor= a 0 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0

MA2099.1_shift5 (ZNF770)
; oligos_6nt_mkv2_m2 versus MA2099.1 (ZNF770); m=17/22; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.440883; -----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0

MA1723.2_rc_shift2 (PRDM9_rc)
; oligos_6nt_mkv2_m2 versus MA1723.2_rc (PRDM9_rc); m=18/22; ncol2=20; w=-4; offset=-4; strand=R; shift=2; score=0.434209; --yTkyykCCyCCcTkc ; cor=; Ncor= a 0 0 29.0 46.0 204.0 186.0 151.0 151.0 2.0 2.0 116.0 37.0 11.0 107.0 11.0 107.0 213.0 c 0 0 572.0 169.0 107.0 441.0 274.0 204.0 976.0 993.0 344.0 932.0 853.0 529.0 204.0 213.0 485.0 g 0 0 81.0 2.0 423.0 2.0 178.0 292.0 2.0 2.0 90.0 2.0 11.0 204.0 11.0 379.0 169.0 t 0 0 318.0 783.0 265.0 371.0 397.0 353.0 20.0 2.0 450.0 29.0 125.0 160.0 774.0 300.0 134.0

MA1714.2_rc_shift0 (ZNF675_rc)
; oligos_6nt_mkv2_m2 versus MA1714.2_rc (ZNF675_rc); m=19/22; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.427848; CATTtTgkCCTCytrrk ; cor=; Ncor= a 21.0 699.0 1.0 1.0 44.0 103.0 199.0 28.0 108.0 115.0 51.0 14.0 21.0 140.0 428.0 320.0 101.0 c 937.0 46.0 3.0 3.0 172.0 33.0 35.0 78.0 857.0 843.0 233.0 934.0 647.0 174.0 94.0 133.0 247.0 g 5.0 224.0 5.0 3.0 108.0 83.0 656.0 304.0 5.0 7.0 21.0 10.0 19.0 245.0 338.0 361.0 261.0 t 37.0 30.0 991.0 994.0 676.0 781.0 110.0 590.0 30.0 35.0 695.0 42.0 313.0 441.0 140.0 186.0 391.0

MA1578.2_shift8 (VEZF1)
; oligos_6nt_mkv2_m2 versus MA1578.2 (VEZF1); m=20/22; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.413314; --------CCCCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0

MA1652.2_rc_shift4 (ZKSCAN5_rc)
; oligos_6nt_mkv2_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=21/22; ncol2=9; w=-2; offset=-2; strand=R; shift=4; score=0.413139; ----cTCACyTCC---- ; cor=; Ncor= a 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 c 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 g 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 t 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0

MA1116.2_rc_shift9 (RBPJ_rc)
; oligos_6nt_mkv2_m2 versus MA1116.2_rc (RBPJ_rc); m=22/22; ncol2=6; w=0; offset=3; strand=R; shift=9; score=0.407739; ---------TTCCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 c 0 0 0 0 0 0 0 0 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 g 0 0 0 0 0 0 0 0 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 t 0 0 0 0 0 0 0 0 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m5_shift0 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=13; shift=0; ncol=13; mrdTCACTGCAvy ; Alignment reference a 37 29 28 6 1 99 5 2 2 3 90 29 23 c 27 26 23 12 100 2 97 1 3 94 9 30 29 g 20 31 27 8 3 2 3 1 98 6 3 27 18 t 24 22 30 82 4 5 3 104 5 5 6 22 38

MA0038.3_shift0 (GFI1)
; oligos_6nt_mkv2_m5 versus MA0038.3 (GFI1); m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.667378; mAATCACdGCa-- ; cor=; Ncor= a 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 2294.0 292.0 16713.0 0 0 c 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 266.0 27891.0 5221.0 0 0 g 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 27514.0 0.0 4079.0 0 0 t 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0 888.0 3702.0 4134.0 0 0

MA1731.2_shift0 (ZNF768)
; oligos_6nt_mkv2_m5 versus MA1731.2 (ZNF768); m=2/2; ncol2=9; w=0; offset=0; strand=D; shift=0; score=0.488976; sCcTCTCTG---- ; cor=; Ncor= a 211.0 29.0 43.0 34.0 1.0 6.0 1.0 1.0 1.0 0 0 0 0 c 478.0 768.0 655.0 39.0 950.0 6.0 987.0 1.0 25.0 0 0 0 0 g 268.0 62.0 179.0 11.0 29.0 43.0 11.0 11.0 973.0 0 0 0 0 t 43.0 141.0 123.0 917.0 20.0 945.0 1.0 987.0 1.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift4 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift4 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=4; ncol=16; ----cwGCCTCCCArv ; Alignment reference a 0 0 0 0 21 31 8 5 2 3 3 3 1 83 34 32 c 0 0 0 0 45 25 10 93 101 2 101 103 101 7 24 32 g 0 0 0 0 22 20 83 6 4 2 2 1 5 7 27 27 t 0 0 0 0 20 32 7 4 1 101 2 1 1 11 23 17

MA1596.1_shift0 (ZNF460)
; oligos_7nt_mkv2_m5 versus MA1596.1 (ZNF460); m=1/9; ncol2=16; w=-4; offset=-4; strand=D; shift=0; score=0.658212; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0

MA2099.1_shift4 (ZNF770)
; oligos_7nt_mkv2_m5 versus MA2099.1 (ZNF770); m=2/9; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.543107; ----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0

MA1627.2_shift7 (Wt1)
; oligos_7nt_mkv2_m5 versus MA1627.2 (Wt1); m=3/9; ncol2=10; w=0; offset=3; strand=D; shift=7; score=0.538556; -------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0

MA1522.2_shift5 (MAZ)
; oligos_7nt_mkv2_m5 versus MA1522.2 (MAZ); m=4/9; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.506561; -----CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0

MA1965.2_shift7 (SP5)
; oligos_7nt_mkv2_m5 versus MA1965.2 (SP5); m=5/9; ncol2=6; w=0; offset=3; strand=D; shift=7; score=0.499282; -------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0

MA0528.3_rc_shift6 (ZNF263_rc)
; oligos_7nt_mkv2_m5 versus MA0528.3_rc (ZNF263_rc); m=6/9; ncol2=7; w=0; offset=2; strand=R; shift=6; score=0.493081; ------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0

MA2125.1_shift8 (Zfp809)
; oligos_7nt_mkv2_m5 versus MA2125.1 (Zfp809); m=7/9; ncol2=9; w=0; offset=4; strand=D; shift=8; score=0.453735; --------wTCCCAGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 c 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 g 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 t 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0

MA1723.2_rc_shift1 (PRDM9_rc)
; oligos_7nt_mkv2_m5 versus MA1723.2_rc (PRDM9_rc); m=8/9; ncol2=20; w=-3; offset=-3; strand=R; shift=1; score=0.434406; -yTkyykCCyCCcTkc ; cor=; Ncor= a 0 29.0 46.0 204.0 186.0 151.0 151.0 2.0 2.0 116.0 37.0 11.0 107.0 11.0 107.0 213.0 c 0 572.0 169.0 107.0 441.0 274.0 204.0 976.0 993.0 344.0 932.0 853.0 529.0 204.0 213.0 485.0 g 0 81.0 2.0 423.0 2.0 178.0 292.0 2.0 2.0 90.0 2.0 11.0 204.0 11.0 379.0 169.0 t 0 318.0 783.0 265.0 371.0 397.0 353.0 20.0 2.0 450.0 29.0 125.0 160.0 774.0 300.0 134.0

MA1710.2_rc_shift1 (ZNF257_rc)
; oligos_7nt_mkv2_m5 versus MA1710.2_rc (ZNF257_rc); m=9/9; ncol2=10; w=-3; offset=-3; strand=R; shift=1; score=0.410747; -cyCTygCCTC----- ; cor=; Ncor= a 0 162.0 1.0 1.0 1.0 1.0 124.0 1.0 1.0 74.0 1.0 0 0 0 0 0 c 0 625.0 480.0 997.0 166.0 396.0 1.0 997.0 997.0 1.0 997.0 0 0 0 0 0 g 0 101.0 85.0 1.0 1.0 55.0 637.0 1.0 1.0 1.0 1.0 0 0 0 0 0 t 0 112.0 434.0 1.0 832.0 549.0 239.0 1.0 1.0 924.0 1.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift1 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=17; shift=1; ncol=18; -rmmGCsGCGGCGGsGrg ; Alignment reference a 0 48 46 52 6 2 5 4 7 2 5 6 4 5 7 7 31 26 c 0 29 48 40 10 111 81 1 99 18 2 90 7 5 34 19 21 19 g 0 42 21 26 103 9 33 116 11 99 113 12 108 110 68 84 52 55 t 0 4 8 5 4 1 4 2 6 4 3 15 4 3 14 13 19 23

MA1721.2_shift0 (ZNF93)
; oligos_7nt_mkv2_m2 versus MA1721.2 (ZNF93); m=1/9; ncol2=14; w=-1; offset=-1; strand=D; shift=0; score=0.569225; gGyrkCrGCAGCGG---- ; cor=; Ncor= a 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0 0 0 0 0 c 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0 0 0 0 0 g 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0 0 0 0 0 t 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0 0 0 0 0

MA1961.2_shift6 (PATZ1)
; oligos_7nt_mkv2_m2 versus MA1961.2 (PATZ1); m=2/9; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.512935; ------sGGGGmGGGGs- ; cor=; Ncor= a 0 0 0 0 0 0 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 c 0 0 0 0 0 0 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 g 0 0 0 0 0 0 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 t 0 0 0 0 0 0 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0

MA0751.2_rc_shift6 (ZIC4_rc)
; oligos_7nt_mkv2_m2 versus MA0751.2_rc (ZIC4_rc); m=3/9; ncol2=14; w=0; offset=5; strand=R; shift=6; score=0.454827; ------CrCmrCrGGGGG ; cor=; Ncor= a 0 0 0 0 0 0 1156.0 1454.0 67.0 3488.0 1017.0 69.0 1078.0 11.0 1.0 275.0 147.0 98.0 c 0 0 0 0 0 0 4522.0 599.0 5086.0 1903.0 252.0 4795.0 6.0 0.0 0.0 225.0 121.0 52.0 g 0 0 0 0 0 0 452.0 1044.0 18.0 865.0 2279.0 68.0 2222.0 2985.0 2999.0 2757.0 2890.0 2870.0 t 0 0 0 0 0 0 74.0 704.0 258.0 1052.0 24.0 1095.0 24.0 114.0 8.0 614.0 209.0 315.0

MA0516.3_shift7 (SP2)
; oligos_7nt_mkv2_m2 versus MA0516.3 (SP2); m=4/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.43563; -------GGGGCGGGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 c 0 0 0 0 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 g 0 0 0 0 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 t 0 0 0 0 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0

MA0079.5_shift7 (SP1)
; oligos_7nt_mkv2_m2 versus MA0079.5 (SP1); m=5/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.42991; -------GGGGMGGrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 c 0 0 0 0 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 g 0 0 0 0 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 t 0 0 0 0 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0

MA0742.2_shift7 (KLF12)
; oligos_7nt_mkv2_m2 versus MA0742.2 (KLF12); m=6/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.422295; -------GGGGCGGGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 c 0 0 0 0 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 g 0 0 0 0 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 t 0 0 0 0 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0

MA1511.2_shift7 (KLF10)
; oligos_7nt_mkv2_m2 versus MA1511.2 (KLF10); m=7/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.419601; -------GGGGCGKGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 c 0 0 0 0 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 g 0 0 0 0 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 t 0 0 0 0 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0

MA0685.2_shift7 (SP4)
; oligos_7nt_mkv2_m2 versus MA0685.2 (SP4); m=8/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.41351; -------gGGGMGGrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 c 0 0 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 g 0 0 0 0 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 t 0 0 0 0 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0

MA0740.2_shift7 (KLF14)
; oligos_7nt_mkv2_m2 versus MA0740.2 (KLF14); m=9/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.402598; -------kGGGCGKGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 c 0 0 0 0 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 g 0 0 0 0 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 t 0 0 0 0 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=18; shift=0; ncol=18; mmsCCGCSGCSGCGGskk ; Alignment reference a 37 37 22 20 18 5 2 2 6 4 0 3 1 3 4 3 5 15 c 34 40 40 69 69 4 87 71 1 88 25 6 88 8 4 32 15 12 g 13 16 33 6 8 88 6 25 90 1 71 87 4 72 74 44 43 35 t 14 5 3 3 3 1 3 0 1 5 2 2 5 15 16 19 35 36

MA1721.2_shift1 (ZNF93)
; oligos_6nt_mkv2_m1 versus MA1721.2 (ZNF93); m=1/1; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.559418; -gGyrkCrGCAGCGG--- ; cor=; Ncor= a 0 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0 0 0 0 c 0 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0 0 0 0 g 0 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0 0 0 0 t 0 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=20; shift=0; ncol=20; cmmsCCGCsGCSGCGGskkk ; Alignment reference a 22 33 25 16 11 12 8 2 2 4 1 1 2 2 3 4 1 2 10 10 c 40 35 54 41 69 66 7 83 61 2 83 26 5 74 8 7 32 10 14 18 g 19 13 10 34 7 10 74 5 27 84 2 63 82 9 68 69 42 53 35 40 t 10 10 2 0 4 3 2 1 1 1 5 1 2 6 12 11 16 26 32 23

MA1721.2_shift2 (ZNF93)
; oligos_7nt_mkv2_m1 versus MA1721.2 (ZNF93); m=1/1; ncol2=14; w=0; offset=2; strand=D; shift=2; score=0.499926; --gGyrkCrGCAGCGG---- ; cor=; Ncor= a 0 0 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0 0 0 0 0 c 0 0 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0 0 0 0 0 g 0 0 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0 0 0 0 0 t 0 0 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=11; shift=1; ncol=12; -aaAAAGCCGcg ; Alignment reference a 0 45 40 73 78 74 2 3 5 3 17 12 c 0 10 15 0 2 1 4 76 75 1 33 12 g 0 14 15 7 1 6 72 1 2 75 14 49 t 0 13 12 2 1 1 4 2 0 3 18 9

MA0442.3_shift1 (SOX10)
; oligos_7nt_mkv2_m4 versus MA0442.3 (SOX10); m=1/3; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.46273; -ACAAAG----- ; cor=; Ncor= a 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 0 0 0 c 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 0 0 0 g 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 0 0 0 t 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0 0 0 0

MA0146.3_rc_shift4 (Zfx_rc)
; oligos_7nt_mkv2_m4 versus MA0146.3_rc (Zfx_rc); m=2/3; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.433377; ----AGGCCbvG ; cor=; Ncor= a 0 0 0 0 480.0 1.0 0.0 1.0 1.0 15.0 144.0 112.0 c 0 0 0 0 0.0 0.0 0.0 477.0 470.0 122.0 183.0 2.0 g 0 0 0 0 1.0 480.0 481.0 3.0 2.0 153.0 124.0 361.0 t 0 0 0 0 0.0 0.0 0.0 0.0 8.0 191.0 30.0 6.0

MA0508.4_rc_shift0 (PRDM1_rc)
; oligos_7nt_mkv2_m4 versus MA0508.4_rc (PRDM1_rc); m=3/3; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.423864; GAGAAAG----- ; cor=; Ncor= a 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 0 0 0 c 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 0 0 0 g 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 0 0 0 t 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m3_shift2 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=12; shift=2; ncol=14; --ccCCCCACCCcs ; Alignment reference a 0 0 26 31 0 9 5 4 108 4 2 11 35 19 c 0 0 55 43 133 127 133 133 8 132 131 102 57 52 g 0 0 34 35 7 6 3 3 16 7 6 21 21 46 t 0 0 30 36 5 3 4 5 13 2 6 11 32 28
MA1961.2_rc_shift3 (PATZ1_rc)				; oligos_7nt_mkv2_m3 versus MA1961.2_rc (PATZ1_rc); m=1/32; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.826243; ---sCCCCkCCCCs ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0
MA0599.1_shift3 (KLF5)				; oligos_7nt_mkv2_m3 versus MA0599.1 (KLF5); m=2/32; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.77174; ---gCCMCrCCCh- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0
MA1653.2_shift4 (ZNF148)				; oligos_7nt_mkv2_m3 versus MA1653.2 (ZNF148); m=3/32; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.710226; ----CCCCTCCCcc ; cor=; Ncor= a 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0
MA1107.3_shift3 (KLF9)				; oligos_7nt_mkv2_m3 versus MA1107.3 (KLF9); m=4/32; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.688515; ---gCCACACCCAC ; cor=; Ncor= a 0 0 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 c 0 0 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 g 0 0 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 t 0 0 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0
MA0741.1_shift3 (KLF16)				; oligos_7nt_mkv2_m3 versus MA0741.1 (KLF16); m=5/32; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.685959; ---gmCMCgCCCMC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0
MA1630.3_rc_shift4 (ZNF281_rc)				; oligos_7nt_mkv2_m3 versus MA1630.3_rc (ZNF281_rc); m=6/32; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.684942; ----CCCCTCCCCC ; cor=; Ncor= a 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 c 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 g 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 t 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0
MA0753.3_shift4 (ZNF740)				; oligos_7nt_mkv2_m3 versus MA0753.3 (ZNF740); m=7/32; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.676299; ----CCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0
MA0746.3_shift3 (SP3)				; oligos_7nt_mkv2_m3 versus MA0746.3 (SP3); m=8/32; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.660427; ---rCCACGCCCmC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0
MA0039.5_shift4 (KLF4)				; oligos_7nt_mkv2_m3 versus MA0039.5 (KLF4); m=9/32; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.658739; ----CCCCACCC-- ; cor=; Ncor= a 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_7nt_mkv2_m3 versus MA1511.2_rc (KLF10_rc); m=10/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.647408; ----CCMCGCCCC- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0
MA0685.2_rc_shift4 (SP4_rc)				; oligos_7nt_mkv2_m3 versus MA0685.2_rc (SP4_rc); m=11/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.645735; ----CyCCKCCCc- ; cor=; Ncor= a 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 c 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 g 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 t 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_7nt_mkv2_m3 versus MA0740.2_rc (KLF14_rc); m=12/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.638374; ----CCMCGCCCm- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_7nt_mkv2_m3 versus MA0742.2_rc (KLF12_rc); m=13/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.630805; ----CCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0
MA0516.3_rc_shift4 (SP2_rc)				; oligos_7nt_mkv2_m3 versus MA0516.3_rc (SP2_rc); m=14/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.622945; ----cCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0
MA1564.2_shift4 (SP9)				; oligos_7nt_mkv2_m3 versus MA1564.2 (SP9); m=15/32; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.622863; ----cCmCGCCCmc ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0
MA0079.5_rc_shift4 (SP1_rc)				; oligos_7nt_mkv2_m3 versus MA0079.5_rc (SP1_rc); m=16/32; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.621742; ----CyCCKCCCC- ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0
MA0493.3_rc_shift4 (KLF1_rc)				; oligos_7nt_mkv2_m3 versus MA0493.3_rc (KLF1_rc); m=17/32; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.619521; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0
MA1512.2_shift4 (KLF11)				; oligos_7nt_mkv2_m3 versus MA1512.2 (KLF11); m=18/32; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.594504; ----cCACGCCCmC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0
MA1959.2_rc_shift4 (KLF7_rc)				; oligos_7nt_mkv2_m3 versus MA1959.2_rc (KLF7_rc); m=19/32; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.582006; ----CcMCGCCC-- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0
MA1522.2_shift4 (MAZ)				; oligos_7nt_mkv2_m3 versus MA1522.2 (MAZ); m=20/32; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.566925; ----CCCCTCCc-- ; cor=; Ncor= a 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 c 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 g 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 t 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0
MA1515.2_shift4 (KLF2)				; oligos_7nt_mkv2_m3 versus MA1515.2 (KLF2); m=21/32; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.564037; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0
MA1517.2_shift4 (KLF6)				; oligos_7nt_mkv2_m3 versus MA1517.2 (KLF6); m=22/32; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.55775; ----cCACRCCCm- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0
MA0747.2_shift4 (SP8)				; oligos_7nt_mkv2_m3 versus MA0747.2 (SP8); m=23/32; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.555702; ----mCACgCCCmC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0
MA1513.2_shift4 (KLF15)				; oligos_7nt_mkv2_m3 versus MA1513.2 (KLF15); m=24/32; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.550235; ----cCCCGCCC-- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0
MA1627.2_shift0 (Wt1)				; oligos_7nt_mkv2_m3 versus MA1627.2 (Wt1); m=25/32; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.471394; cCTCCCCCAC---- ; cor=; Ncor= a 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 0 0 0 0 c 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 0 0 0 0 g 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 0 0 0 0 t 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 0 0 0 0
MA1578.2_shift2 (VEZF1)				; oligos_7nt_mkv2_m3 versus MA1578.2 (VEZF1); m=26/32; ncol2=6; w=0; offset=0; strand=D; shift=2; score=0.443751; --CCCCCC------ ; cor=; Ncor= a 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 0 0 c 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 0 0 g 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0 0 0
MA1615.2_rc_shift1 (Plagl1_rc)				; oligos_7nt_mkv2_m3 versus MA1615.2_rc (Plagl1_rc); m=27/32; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.441894; -TGGCCCCa----- ; cor=; Ncor= a 0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 0 c 0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 0 g 0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 0 t 0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0 0
MA0056.3_shift1 (MZF1)				; oligos_7nt_mkv2_m3 versus MA0056.3 (MZF1); m=28/32; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.441538; -AATCCCCA----- ; cor=; Ncor= a 0 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 0 0 0 0 0 c 0 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 0 0 0 0 0 g 0 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 0 0 0 0 0 t 0 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 0 0 0 0 0
MA1715.1_shift4 (ZNF707)				; oligos_7nt_mkv2_m3 versus MA1715.1 (ZNF707); m=29/32; ncol2=15; w=0; offset=2; strand=D; shift=4; score=0.42175; ----CCCCACTYCT ; cor=; Ncor= a 0 0 0 0 37.0 37.0 12.0 41.0 1109.0 9.0 5.0 4.0 12.0 17.0 c 0 0 0 0 960.0 1057.0 1109.0 1044.0 5.0 1111.0 11.0 821.0 1079.0 83.0 g 0 0 0 0 34.0 31.0 9.0 8.0 17.0 5.0 2.0 11.0 9.0 5.0 t 0 0 0 0 126.0 32.0 27.0 64.0 26.0 32.0 1139.0 321.0 57.0 1052.0
MA0595.1_shift0 (SREBF1)				; oligos_7nt_mkv2_m3 versus MA0595.1 (SREBF1); m=30/32; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.411654; rTCACcCCAy---- ; cor=; Ncor= a 28.0 0.0 0.0 58.0 0.0 6.0 0.0 2.0 58.0 0.0 0 0 0 0 c 14.0 0.0 58.0 0.0 51.0 38.0 44.0 45.0 0.0 26.0 0 0 0 0 g 16.0 0.0 0.0 0.0 7.0 13.0 0.0 11.0 0.0 7.0 0 0 0 0 t 0.0 58.0 0.0 0.0 0.0 1.0 14.0 0.0 0.0 25.0 0 0 0 0
MA2328.1_shift0 (ZBED4)				; oligos_7nt_mkv2_m3 versus MA2328.1 (ZBED4); m=31/32; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.405799; CcCGCyCCGC---- ; cor=; Ncor= a 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 0 0 0 c 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 0 0 0 g 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 0 0 0 t 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0 0 0 0
MA1965.2_shift6 (SP5)				; oligos_7nt_mkv2_m3 versus MA1965.2 (SP5); m=32/32; ncol2=6; w=0; offset=4; strand=D; shift=6; score=0.403981; ------CCTCCC-- ; cor=; Ncor= a 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -mkCCCAGChy ; Alignment reference a 0 35 32 2 3 0 121 1 0 34 29 c 0 42 23 128 126 119 7 4 130 35 39 g 0 26 37 0 3 5 4 125 0 26 27 t 0 29 40 2 0 8 0 2 2 37 37
MA2125.1_shift1 (Zfp809)				; oligos_6nt_mkv2_m3 versus MA2125.1 (Zfp809); m=1/14; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.79132; -wTCCCAGCc- ; cor=; Ncor= a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0
MA1979.2_rc_shift1 (ZNF416_rc)				; oligos_6nt_mkv2_m3 versus MA1979.2_rc (ZNF416_rc); m=2/14; ncol2=10; w=0; offset=0; strand=R; shift=1; score=0.705555; -tGCCCAGAtA ; cor=; Ncor= a 0 66.0 18.0 3.0 3.0 2.0 336.0 3.0 254.0 46.0 240.0 c 0 29.0 3.0 341.0 335.0 335.0 1.0 7.0 15.0 77.0 26.0 g 0 38.0 320.0 1.0 5.0 7.0 6.0 334.0 28.0 25.0 32.0 t 0 212.0 4.0 0.0 2.0 1.0 2.0 1.0 48.0 197.0 47.0
MA2341.1_shift3 (FEZF2)				; oligos_6nt_mkv2_m3 versus MA2341.1 (FEZF2); m=3/14; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.67802; ---CCCAGCCT ; cor=; Ncor= a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0
MA1656.2_shift0 (ZNF449)				; oligos_6nt_mkv2_m3 versus MA1656.2 (ZNF449); m=4/14; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.576954; aAGCCCAACc- ; cor=; Ncor= a 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 0 c 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 0 g 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 0 t 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 0
MA1629.2_shift3 (Zic2)				; oligos_6nt_mkv2_m3 versus MA1629.2 (Zic2); m=5/14; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.52618; ---CaCAGCAG ; cor=; Ncor= a 0 0 0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 c 0 0 0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 g 0 0 0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 t 0 0 0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0
MA1116.2_rc_shift1 (RBPJ_rc)				; oligos_6nt_mkv2_m3 versus MA1116.2_rc (RBPJ_rc); m=6/14; ncol2=6; w=0; offset=0; strand=R; shift=1; score=0.487566; -TTCCCA---- ; cor=; Ncor= a 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 0 0 c 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 0 0 g 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 0 0 t 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0 0 0
MA1997.2_shift5 (Olig2)				; oligos_6nt_mkv2_m3 versus MA1997.2 (Olig2); m=7/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.486587; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 c 0 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 g 0 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 t 0 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0
MA0633.3_rc_shift5 (Twist2_rc)				; oligos_6nt_mkv2_m3 versus MA0633.3_rc (Twist2_rc); m=8/14; ncol2=6; w=0; offset=4; strand=R; shift=5; score=0.486217; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 15.0 48918.0 9.0 21.0 0.0 60.0 c 0 0 0 0 0 49473.0 342.0 16.0 49583.0 369.0 81.0 g 0 0 0 0 0 81.0 369.0 49583.0 16.0 345.0 49473.0 t 0 0 0 0 0 60.0 0.0 21.0 9.0 48915.0 15.0
MA1993.2_shift5 (Neurod2)				; oligos_6nt_mkv2_m3 versus MA1993.2 (Neurod2); m=9/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.486131; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 c 0 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 g 0 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 t 0 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0
MA1635.2_shift5 (BHLHE22)				; oligos_6nt_mkv2_m3 versus MA1635.2 (BHLHE22); m=10/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.485288; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 c 0 0 0 0 0 18331.0 37.0 53.0 18288.0 52.0 15.0 g 0 0 0 0 0 11.0 52.0 18288.0 53.0 37.0 18327.0 t 0 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0
MA0521.3_shift5 (Tcf12)				; oligos_6nt_mkv2_m3 versus MA0521.3 (Tcf12); m=11/14; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.480464; -----CAGCTG ; cor=; Ncor= a 0 0 0 0 0 367.0 72283.0 836.0 1565.0 341.0 549.0 c 0 0 0 0 0 72674.0 739.0 1814.0 69780.0 632.0 402.0 g 0 0 0 0 0 404.0 632.0 69780.0 1814.0 738.0 72670.0 t 0 0 0 0 0 550.0 341.0 1565.0 836.0 72284.0 374.0
MA1986.2_shift0 (ZNF692)				; oligos_6nt_mkv2_m3 versus MA1986.2 (ZNF692); m=12/14; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.465832; gGGCCCAs--- ; cor=; Ncor= a 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 852.0 0 0 0 c 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 4998.0 0 0 0 g 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 3703.0 0 0 0 t 1195.0 13.0 26.0 22.0 17.0 21.0 0.0 1192.0 0 0 0
MA0697.3_shift5 (Zic3)				; oligos_6nt_mkv2_m3 versus MA0697.3 (Zic3); m=13/14; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.444182; -----CAGCAG ; cor=; Ncor= a 0 0 0 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 c 0 0 0 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 g 0 0 0 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 t 0 0 0 0 0 334.0 596.0 266.0 792.0 858.0 967.0
MA1628.2_shift5 (Zic1::Zic2)				; oligos_6nt_mkv2_m3 versus MA1628.2 (Zic1::Zic2); m=14/14; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.443478; -----CAGCAG ; cor=; Ncor= a 0 0 0 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 c 0 0 0 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 g 0 0 0 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 t 0 0 0 0 0 163.0 4.0 74.0 428.0 4.0 90.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---cccCCCACCsc ; Alignment reference a 0 0 0 36 25 13 10 2 5 126 1 0 36 29 c 0 0 0 48 58 95 124 140 132 1 142 136 38 57 g 0 0 0 33 32 17 10 3 6 17 3 8 43 29 t 0 0 0 29 31 21 2 1 3 2 0 2 29 31
MA0599.1_shift4 (KLF5)				; oligos_6nt_mkv2_m4 versus MA0599.1 (KLF5); m=1/29; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.749731; ----gCCMCrCCCh ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0
MA1961.2_rc_shift4 (PATZ1_rc)				; oligos_6nt_mkv2_m4 versus MA1961.2_rc (PATZ1_rc); m=2/29; ncol2=11; w=0; offset=1; strand=R; shift=4; score=0.70489; ----sCCCCkCCCC ; cor=; Ncor= a 0 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0
MA0753.3_shift4 (ZNF740)				; oligos_6nt_mkv2_m4 versus MA0753.3 (ZNF740); m=3/29; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.678611; ----CCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0
MA0039.5_shift5 (KLF4)				; oligos_6nt_mkv2_m4 versus MA0039.5 (KLF4); m=4/29; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.665909; -----CCCCACCC- ; cor=; Ncor= a 0 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 c 0 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 g 0 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 t 0 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0
MA0516.3_rc_shift5 (SP2_rc)				; oligos_6nt_mkv2_m4 versus MA0516.3_rc (SP2_rc); m=5/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.632792; -----cCCCGCCCC ; cor=; Ncor= a 0 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 c 0 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 g 0 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 t 0 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226
MA1511.2_rc_shift5 (KLF10_rc)				; oligos_6nt_mkv2_m4 versus MA1511.2_rc (KLF10_rc); m=6/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.627934; -----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427
MA0740.2_rc_shift5 (KLF14_rc)				; oligos_6nt_mkv2_m4 versus MA0740.2_rc (KLF14_rc); m=7/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.620225; -----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158
MA0685.2_rc_shift5 (SP4_rc)				; oligos_6nt_mkv2_m4 versus MA0685.2_rc (SP4_rc); m=8/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.61366; -----CyCCKCCCc ; cor=; Ncor= a 0 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 c 0 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 g 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 t 0 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038
MA0742.2_rc_shift5 (KLF12_rc)				; oligos_6nt_mkv2_m4 versus MA0742.2_rc (KLF12_rc); m=9/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.610243; -----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948
MA0079.5_rc_shift5 (SP1_rc)				; oligos_6nt_mkv2_m4 versus MA0079.5_rc (SP1_rc); m=10/29; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.600752; -----CyCCKCCCC ; cor=; Ncor= a 0 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 c 0 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 g 0 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 t 0 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485
MA0493.3_rc_shift5 (KLF1_rc)				; oligos_6nt_mkv2_m4 versus MA0493.3_rc (KLF1_rc); m=11/29; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.59895; -----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0
MA1653.2_shift5 (ZNF148)				; oligos_6nt_mkv2_m4 versus MA1653.2 (ZNF148); m=12/29; ncol2=10; w=0; offset=2; strand=D; shift=5; score=0.570804; -----CCCCTCCCc ; cor=; Ncor= a 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 c 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 g 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 t 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0
MA1630.3_rc_shift5 (ZNF281_rc)				; oligos_6nt_mkv2_m4 versus MA1630.3_rc (ZNF281_rc); m=13/29; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.567595; -----CCCCTCCCC ; cor=; Ncor= a 0 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 c 0 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 g 0 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 t 0 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0
MA1522.2_shift5 (MAZ)				; oligos_6nt_mkv2_m4 versus MA1522.2 (MAZ); m=14/29; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.565383; -----CCCCTCCc- ; cor=; Ncor= a 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 c 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 g 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 t 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0
MA1959.2_rc_shift5 (KLF7_rc)				; oligos_6nt_mkv2_m4 versus MA1959.2_rc (KLF7_rc); m=15/29; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.555185; -----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0
MA0695.2_shift4 (ZBTB7C)				; oligos_6nt_mkv2_m4 versus MA0695.2 (ZBTB7C); m=16/29; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.554886; ----cgACCACC-- ; cor=; Ncor= a 0 0 0 0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 0 0 c 0 0 0 0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 0 0 g 0 0 0 0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 0 0 t 0 0 0 0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 0 0
MA1515.2_shift5 (KLF2)				; oligos_6nt_mkv2_m4 versus MA1515.2 (KLF2); m=17/29; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.54962; -----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0
MA1513.2_shift5 (KLF15)				; oligos_6nt_mkv2_m4 versus MA1513.2 (KLF15); m=18/29; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.548391; -----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA0735.2_shift0 (GLIS1)				; oligos_6nt_mkv2_m4 versus MA0735.2 (GLIS1); m=19/29; ncol2=15; w=-3; offset=-3; strand=D; shift=0; score=0.515586; mGACCCCCCACGWw ; cor=; Ncor= a 3236.0 3.0 6314.0 0.0 4.0 0.0 3.0 0.0 6.0 6781.0 0.0 7.0 5759.0 2846.0 c 1842.0 44.0 0.0 4807.0 4769.0 4796.0 4817.0 4702.0 4505.0 3.0 4549.0 0.0 4.0 1340.0 g 100.0 8617.0 6.0 2.0 2.0 11.0 5.0 0.0 5.0 160.0 0.0 10081.0 32.0 0.0 t 891.0 1016.0 8.0 0.0 3.0 0.0 2.0 7.0 2.0 6.0 0.0 51.0 2024.0 2786.0
MA0471.3_rc_shift4 (E2F6_rc)				; oligos_6nt_mkv2_m4 versus MA0471.3_rc (E2F6_rc); m=20/29; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.512485; ----TTCCCGCC-- ; cor=; Ncor= a 0 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 c 0 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 g 0 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 t 0 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0
MA1627.2_shift1 (Wt1)				; oligos_6nt_mkv2_m4 versus MA1627.2 (Wt1); m=21/29; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.506778; -cCTCCCCCAC--- ; cor=; Ncor= a 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 0 0 0 c 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 0 0 0 g 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 0 0 0 t 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 0 0 0
MA1578.2_shift3 (VEZF1)				; oligos_6nt_mkv2_m4 versus MA1578.2 (VEZF1); m=22/29; ncol2=6; w=0; offset=0; strand=D; shift=3; score=0.487561; ---CCCCCC----- ; cor=; Ncor= a 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 0 c 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 0 g 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0 0
MA0056.3_shift2 (MZF1)				; oligos_6nt_mkv2_m4 versus MA0056.3 (MZF1); m=23/29; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.46601; --AATCCCCA---- ; cor=; Ncor= a 0 0 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 0 0 0 0 c 0 0 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 0 0 0 0 g 0 0 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 0 0 0 0 t 0 0 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 0 0 0 0
MA1615.2_rc_shift2 (Plagl1_rc)				; oligos_6nt_mkv2_m4 versus MA1615.2_rc (Plagl1_rc); m=24/29; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.454638; --TGGCCCCa---- ; cor=; Ncor= a 0 0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 c 0 0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 g 0 0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 t 0 0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0
MA0130.1_shift5 (ZNF354C)				; oligos_6nt_mkv2_m4 versus MA0130.1 (ZNF354C); m=25/29; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.437482; -----mTCCAC--- ; cor=; Ncor= a 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 c 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0
MA1512.2_shift1 (KLF11)				; oligos_6nt_mkv2_m4 versus MA1512.2 (KLF11); m=26/29; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.432806; -cCACGCCCmC--- ; cor=; Ncor= a 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0
MA1107.3_shift0 (KLF9)				; oligos_6nt_mkv2_m4 versus MA1107.3 (KLF9); m=27/29; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.427338; gCCACACCCAC--- ; cor=; Ncor= a 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 0 0 0 c 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 0 0 0 g 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 0 0 0 t 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 0 0 0
MA0103.4_shift8 (ZEB1)				; oligos_6nt_mkv2_m4 versus MA0103.4 (ZEB1); m=28/29; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.426395; --------CACCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 114.0 19905.0 32.0 193.0 4.0 441.0 c 0 0 0 0 0 0 0 0 19195.0 0.0 19878.0 19257.0 501.0 178.0 g 0 0 0 0 0 0 0 0 158.0 223.0 97.0 649.0 355.0 19381.0 t 0 0 0 0 0 0 0 0 662.0 1.0 122.0 30.0 19269.0 129.0
MA0820.2_shift8 (FIGLA)				; oligos_6nt_mkv2_m4 versus MA0820.2 (FIGLA); m=29/29; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.403384; --------CACCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 1780.0 0.0 9.0 56.0 36.0 c 0 0 0 0 0 0 0 0 1780.0 46.0 1780.0 1780.0 0.0 33.0 g 0 0 0 0 0 0 0 0 0.0 0.0 527.0 311.0 17.0 1780.0 t 0 0 0 0 0 0 0 0 29.0 14.0 0.0 0.0 1780.0 65.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift6 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=6; ncol=17; ------wsCCTCCCAmy ; Alignment reference a 0 0 0 0 0 0 47 37 6 6 10 5 7 5 119 48 41 c 0 0 0 0 0 0 39 43 162 158 0 160 158 158 14 50 56 g 0 0 0 0 0 0 31 50 1 4 6 0 3 4 7 41 31 t 0 0 0 0 0 0 54 41 2 3 155 6 3 4 31 32 43
MA1653.2_shift6 (ZNF148)				; oligos_6nt_mkv2_m2 versus MA1653.2 (ZNF148); m=1/22; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.693167; ------CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA1522.2_shift6 (MAZ)				; oligos_6nt_mkv2_m2 versus MA1522.2 (MAZ); m=2/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.602709; ------CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA0685.2_rc_shift6 (SP4_rc)				; oligos_6nt_mkv2_m2 versus MA0685.2_rc (SP4_rc); m=3/22; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.593982; ------CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA0734.4_shift6 (Gli2)				; oligos_6nt_mkv2_m2 versus MA0734.4 (Gli2); m=4/22; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.592445; ------GACCACCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 60.0 1920.0 44.0 8.0 2216.0 9.0 313.0 59.0 2101.0 0 0 c 0 0 0 0 0 0 96.0 227.0 2404.0 2464.0 40.0 2451.0 2145.0 2288.0 85.0 0 0 g 0 0 0 0 0 0 2251.0 337.0 27.0 13.0 82.0 12.0 20.0 77.0 193.0 0 0 t 0 0 0 0 0 0 85.0 8.0 17.0 7.0 154.0 20.0 14.0 68.0 113.0 0 0
MA1627.2_shift8 (Wt1)				; oligos_6nt_mkv2_m2 versus MA1627.2 (Wt1); m=5/22; ncol2=10; w=0; offset=2; strand=D; shift=8; score=0.588634; --------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0
MA0528.3_rc_shift7 (ZNF263_rc)				; oligos_6nt_mkv2_m2 versus MA0528.3_rc (ZNF263_rc); m=6/22; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.587921; -------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0
MA1596.1_shift1 (ZNF460)				; oligos_6nt_mkv2_m2 versus MA1596.1 (ZNF460); m=7/22; ncol2=16; w=-5; offset=-5; strand=D; shift=1; score=0.574004; -rCCTCmGCCTCCCrrG ; cor=; Ncor= a 0 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 0 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 0 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 0 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0
MA0599.1_shift5 (KLF5)				; oligos_6nt_mkv2_m2 versus MA0599.1 (KLF5); m=8/22; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.557632; -----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0
MA1965.2_shift8 (SP5)				; oligos_6nt_mkv2_m2 versus MA1965.2 (SP5); m=9/22; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.545102; --------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0
MA1990.2_shift5 (Gli1)				; oligos_6nt_mkv2_m2 versus MA1990.2 (Gli1); m=10/22; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score= 0.5304; -----rGACCACCCA-- ; cor=; Ncor= a 0 0 0 0 0 2124.0 113.0 3120.0 100.0 71.0 3653.0 38.0 559.0 153.0 3312.0 0 0 c 0 0 0 0 0 299.0 193.0 331.0 3744.0 3809.0 73.0 3827.0 3231.0 3566.0 188.0 0 0 g 0 0 0 0 0 1104.0 3535.0 498.0 88.0 74.0 87.0 75.0 145.0 110.0 251.0 0 0 t 0 0 0 0 0 476.0 162.0 54.0 71.0 49.0 190.0 63.0 68.0 174.0 252.0 0 0
MA0493.3_rc_shift6 (KLF1_rc)				; oligos_6nt_mkv2_m2 versus MA0493.3_rc (KLF1_rc); m=11/22; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.517379; ------CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA1959.2_rc_shift6 (KLF7_rc)				; oligos_6nt_mkv2_m2 versus MA1959.2_rc (KLF7_rc); m=12/22; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.515691; ------CcMCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA1513.2_shift6 (KLF15)				; oligos_6nt_mkv2_m2 versus MA1513.2 (KLF15); m=13/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.51494; ------cCCCGCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA0039.5_shift6 (KLF4)				; oligos_6nt_mkv2_m2 versus MA0039.5 (KLF4); m=14/22; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.511856; ------CCCCACCC--- ; cor=; Ncor= a 0 0 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0
MA2125.1_shift9 (Zfp809)				; oligos_6nt_mkv2_m2 versus MA2125.1 (Zfp809); m=15/22; ncol2=9; w=0; offset=3; strand=D; shift=9; score=0.487859; ---------wTCCCAGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 c 0 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 g 0 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 t 0 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0
MA1587.1_shift2 (ZNF135)				; oligos_6nt_mkv2_m2 versus MA1587.1 (ZNF135); m=16/22; ncol2=14; w=-4; offset=-4; strand=D; shift=2; score=0.485995; --cCTCGACCTCCyrr- ; cor=; Ncor= a 0 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0
MA2099.1_shift5 (ZNF770)				; oligos_6nt_mkv2_m2 versus MA2099.1 (ZNF770); m=17/22; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.440883; -----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0
MA1723.2_rc_shift2 (PRDM9_rc)				; oligos_6nt_mkv2_m2 versus MA1723.2_rc (PRDM9_rc); m=18/22; ncol2=20; w=-4; offset=-4; strand=R; shift=2; score=0.434209; --yTkyykCCyCCcTkc ; cor=; Ncor= a 0 0 29.0 46.0 204.0 186.0 151.0 151.0 2.0 2.0 116.0 37.0 11.0 107.0 11.0 107.0 213.0 c 0 0 572.0 169.0 107.0 441.0 274.0 204.0 976.0 993.0 344.0 932.0 853.0 529.0 204.0 213.0 485.0 g 0 0 81.0 2.0 423.0 2.0 178.0 292.0 2.0 2.0 90.0 2.0 11.0 204.0 11.0 379.0 169.0 t 0 0 318.0 783.0 265.0 371.0 397.0 353.0 20.0 2.0 450.0 29.0 125.0 160.0 774.0 300.0 134.0
MA1714.2_rc_shift0 (ZNF675_rc)				; oligos_6nt_mkv2_m2 versus MA1714.2_rc (ZNF675_rc); m=19/22; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.427848; CATTtTgkCCTCytrrk ; cor=; Ncor= a 21.0 699.0 1.0 1.0 44.0 103.0 199.0 28.0 108.0 115.0 51.0 14.0 21.0 140.0 428.0 320.0 101.0 c 937.0 46.0 3.0 3.0 172.0 33.0 35.0 78.0 857.0 843.0 233.0 934.0 647.0 174.0 94.0 133.0 247.0 g 5.0 224.0 5.0 3.0 108.0 83.0 656.0 304.0 5.0 7.0 21.0 10.0 19.0 245.0 338.0 361.0 261.0 t 37.0 30.0 991.0 994.0 676.0 781.0 110.0 590.0 30.0 35.0 695.0 42.0 313.0 441.0 140.0 186.0 391.0
MA1578.2_shift8 (VEZF1)				; oligos_6nt_mkv2_m2 versus MA1578.2 (VEZF1); m=20/22; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.413314; --------CCCCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0
MA1652.2_rc_shift4 (ZKSCAN5_rc)				; oligos_6nt_mkv2_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=21/22; ncol2=9; w=-2; offset=-2; strand=R; shift=4; score=0.413139; ----cTCACyTCC---- ; cor=; Ncor= a 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 c 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 g 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 t 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0
MA1116.2_rc_shift9 (RBPJ_rc)				; oligos_6nt_mkv2_m2 versus MA1116.2_rc (RBPJ_rc); m=22/22; ncol2=6; w=0; offset=3; strand=R; shift=9; score=0.407739; ---------TTCCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 c 0 0 0 0 0 0 0 0 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 g 0 0 0 0 0 0 0 0 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 t 0 0 0 0 0 0 0 0 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m5_shift4 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=4; ncol=16; ----cwGCCTCCCArv ; Alignment reference a 0 0 0 0 21 31 8 5 2 3 3 3 1 83 34 32 c 0 0 0 0 45 25 10 93 101 2 101 103 101 7 24 32 g 0 0 0 0 22 20 83 6 4 2 2 1 5 7 27 27 t 0 0 0 0 20 32 7 4 1 101 2 1 1 11 23 17
MA1596.1_shift0 (ZNF460)				; oligos_7nt_mkv2_m5 versus MA1596.1 (ZNF460); m=1/9; ncol2=16; w=-4; offset=-4; strand=D; shift=0; score=0.658212; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0
MA2099.1_shift4 (ZNF770)				; oligos_7nt_mkv2_m5 versus MA2099.1 (ZNF770); m=2/9; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.543107; ----CrGCCTCm---- ; cor=; Ncor= a 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 0 0 0 c 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 0 0 0 g 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 0 0 0 t 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0 0 0 0
MA1627.2_shift7 (Wt1)				; oligos_7nt_mkv2_m5 versus MA1627.2 (Wt1); m=3/9; ncol2=10; w=0; offset=3; strand=D; shift=7; score=0.538556; -------cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0
MA1522.2_shift5 (MAZ)				; oligos_7nt_mkv2_m5 versus MA1522.2 (MAZ); m=4/9; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.506561; -----CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA1965.2_shift7 (SP5)				; oligos_7nt_mkv2_m5 versus MA1965.2 (SP5); m=5/9; ncol2=6; w=0; offset=3; strand=D; shift=7; score=0.499282; -------CCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0
MA0528.3_rc_shift6 (ZNF263_rc)				; oligos_7nt_mkv2_m5 versus MA0528.3_rc (ZNF263_rc); m=6/9; ncol2=7; w=0; offset=2; strand=R; shift=6; score=0.493081; ------TCCTCCC--- ; cor=; Ncor= a 0 0 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0
MA2125.1_shift8 (Zfp809)				; oligos_7nt_mkv2_m5 versus MA2125.1 (Zfp809); m=7/9; ncol2=9; w=0; offset=4; strand=D; shift=8; score=0.453735; --------wTCCCAGC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 c 0 0 0 0 0 0 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 g 0 0 0 0 0 0 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 t 0 0 0 0 0 0 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0
MA1723.2_rc_shift1 (PRDM9_rc)				; oligos_7nt_mkv2_m5 versus MA1723.2_rc (PRDM9_rc); m=8/9; ncol2=20; w=-3; offset=-3; strand=R; shift=1; score=0.434406; -yTkyykCCyCCcTkc ; cor=; Ncor= a 0 29.0 46.0 204.0 186.0 151.0 151.0 2.0 2.0 116.0 37.0 11.0 107.0 11.0 107.0 213.0 c 0 572.0 169.0 107.0 441.0 274.0 204.0 976.0 993.0 344.0 932.0 853.0 529.0 204.0 213.0 485.0 g 0 81.0 2.0 423.0 2.0 178.0 292.0 2.0 2.0 90.0 2.0 11.0 204.0 11.0 379.0 169.0 t 0 318.0 783.0 265.0 371.0 397.0 353.0 20.0 2.0 450.0 29.0 125.0 160.0 774.0 300.0 134.0
MA1710.2_rc_shift1 (ZNF257_rc)				; oligos_7nt_mkv2_m5 versus MA1710.2_rc (ZNF257_rc); m=9/9; ncol2=10; w=-3; offset=-3; strand=R; shift=1; score=0.410747; -cyCTygCCTC----- ; cor=; Ncor= a 0 162.0 1.0 1.0 1.0 1.0 124.0 1.0 1.0 74.0 1.0 0 0 0 0 0 c 0 625.0 480.0 997.0 166.0 396.0 1.0 997.0 997.0 1.0 997.0 0 0 0 0 0 g 0 101.0 85.0 1.0 1.0 55.0 637.0 1.0 1.0 1.0 1.0 0 0 0 0 0 t 0 112.0 434.0 1.0 832.0 549.0 239.0 1.0 1.0 924.0 1.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift1 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=17; shift=1; ncol=18; -rmmGCsGCGGCGGsGrg ; Alignment reference a 0 48 46 52 6 2 5 4 7 2 5 6 4 5 7 7 31 26 c 0 29 48 40 10 111 81 1 99 18 2 90 7 5 34 19 21 19 g 0 42 21 26 103 9 33 116 11 99 113 12 108 110 68 84 52 55 t 0 4 8 5 4 1 4 2 6 4 3 15 4 3 14 13 19 23
MA1721.2_shift0 (ZNF93)				; oligos_7nt_mkv2_m2 versus MA1721.2 (ZNF93); m=1/9; ncol2=14; w=-1; offset=-1; strand=D; shift=0; score=0.569225; gGyrkCrGCAGCGG---- ; cor=; Ncor= a 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0 0 0 0 0 c 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0 0 0 0 0 g 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0 0 0 0 0 t 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0 0 0 0 0
MA1961.2_shift6 (PATZ1)				; oligos_7nt_mkv2_m2 versus MA1961.2 (PATZ1); m=2/9; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.512935; ------sGGGGmGGGGs- ; cor=; Ncor= a 0 0 0 0 0 0 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 c 0 0 0 0 0 0 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 g 0 0 0 0 0 0 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 t 0 0 0 0 0 0 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0
MA0751.2_rc_shift6 (ZIC4_rc)				; oligos_7nt_mkv2_m2 versus MA0751.2_rc (ZIC4_rc); m=3/9; ncol2=14; w=0; offset=5; strand=R; shift=6; score=0.454827; ------CrCmrCrGGGGG ; cor=; Ncor= a 0 0 0 0 0 0 1156.0 1454.0 67.0 3488.0 1017.0 69.0 1078.0 11.0 1.0 275.0 147.0 98.0 c 0 0 0 0 0 0 4522.0 599.0 5086.0 1903.0 252.0 4795.0 6.0 0.0 0.0 225.0 121.0 52.0 g 0 0 0 0 0 0 452.0 1044.0 18.0 865.0 2279.0 68.0 2222.0 2985.0 2999.0 2757.0 2890.0 2870.0 t 0 0 0 0 0 0 74.0 704.0 258.0 1052.0 24.0 1095.0 24.0 114.0 8.0 614.0 209.0 315.0
MA0516.3_shift7 (SP2)				; oligos_7nt_mkv2_m2 versus MA0516.3 (SP2); m=4/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.43563; -------GGGGCGGGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 c 0 0 0 0 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 g 0 0 0 0 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 t 0 0 0 0 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0
MA0079.5_shift7 (SP1)				; oligos_7nt_mkv2_m2 versus MA0079.5 (SP1); m=5/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.42991; -------GGGGMGGrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 c 0 0 0 0 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 g 0 0 0 0 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 t 0 0 0 0 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0
MA0742.2_shift7 (KLF12)				; oligos_7nt_mkv2_m2 versus MA0742.2 (KLF12); m=6/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.422295; -------GGGGCGGGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 c 0 0 0 0 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 g 0 0 0 0 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 t 0 0 0 0 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0
MA1511.2_shift7 (KLF10)				; oligos_7nt_mkv2_m2 versus MA1511.2 (KLF10); m=7/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.419601; -------GGGGCGKGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 c 0 0 0 0 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 g 0 0 0 0 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 t 0 0 0 0 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0
MA0685.2_shift7 (SP4)				; oligos_7nt_mkv2_m2 versus MA0685.2 (SP4); m=8/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.41351; -------gGGGMGGrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 c 0 0 0 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 g 0 0 0 0 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 t 0 0 0 0 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0
MA0740.2_shift7 (KLF14)				; oligos_7nt_mkv2_m2 versus MA0740.2 (KLF14); m=9/9; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.402598; -------kGGGCGKGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 c 0 0 0 0 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 g 0 0 0 0 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 t 0 0 0 0 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=11; shift=1; ncol=12; -aaAAAGCCGcg ; Alignment reference a 0 45 40 73 78 74 2 3 5 3 17 12 c 0 10 15 0 2 1 4 76 75 1 33 12 g 0 14 15 7 1 6 72 1 2 75 14 49 t 0 13 12 2 1 1 4 2 0 3 18 9
MA0442.3_shift1 (SOX10)				; oligos_7nt_mkv2_m4 versus MA0442.3 (SOX10); m=1/3; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.46273; -ACAAAG----- ; cor=; Ncor= a 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 0 0 0 c 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 0 0 0 g 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 0 0 0 t 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0 0 0 0
MA0146.3_rc_shift4 (Zfx_rc)				; oligos_7nt_mkv2_m4 versus MA0146.3_rc (Zfx_rc); m=2/3; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.433377; ----AGGCCbvG ; cor=; Ncor= a 0 0 0 0 480.0 1.0 0.0 1.0 1.0 15.0 144.0 112.0 c 0 0 0 0 0.0 0.0 0.0 477.0 470.0 122.0 183.0 2.0 g 0 0 0 0 1.0 480.0 481.0 3.0 2.0 153.0 124.0 361.0 t 0 0 0 0 0.0 0.0 0.0 0.0 8.0 191.0 30.0 6.0
MA0508.4_rc_shift0 (PRDM1_rc)				; oligos_7nt_mkv2_m4 versus MA0508.4_rc (PRDM1_rc); m=3/3; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.423864; GAGAAAG----- ; cor=; Ncor= a 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 0 0 0 c 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 0 0 0 g 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 0 0 0 t 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0 0 0 0