/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
 Matrices
	file1	6 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	13	65
		file1	2	16	109
		file1	3	10	9
		file1	4	10	10
		file1	5	17	55
		file1	6	11	7
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv1_m2 MA1731.2 oligos_7nt_mkv1_m2 ZNF768 0.944 0.772 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_6nt_mkv1_m3 MA0078.3 oligos_6nt_mkv1_m3 Sox17 0.723 0.723 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0515.1 oligos_6nt_mkv1_m3 Sox6 0.702 0.702 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 MA1731.2 oligos_6nt_mkv1_m4 ZNF768 0.947 0.689 10 9 8 11 0.7273 0.8000 0.8889 R 2
oligos_6nt_mkv1_m3 MA1562.2 oligos_6nt_mkv1_m3 SOX14 0.760 0.684 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv1_m3 MA1563.2 oligos_6nt_mkv1_m3 SOX18 0.822 0.657 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv1_m3 MA1120.2 oligos_6nt_mkv1_m3 SOX13 0.939 0.657 10 7 7 10 0.7000 0.7000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0514.3 oligos_6nt_mkv1_m3 Sox3 0.933 0.653 10 7 7 10 0.7000 0.7000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0143.5 oligos_6nt_mkv1_m3 SOX2 0.931 0.652 10 7 7 10 0.7000 0.7000 1.0000 R 0
oligos_6nt_mkv1_m3 MA1152.2 oligos_6nt_mkv1_m3 SOX15 0.928 0.650 10 7 7 10 0.7000 0.7000 1.0000 D 0
oligos_6nt_mkv1_m3 MA0077.2 oligos_6nt_mkv1_m3 SOX9 0.781 0.625 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv1_m3 MA0087.3 oligos_6nt_mkv1_m3 Sox5 0.753 0.603 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0084.2 oligos_6nt_mkv1_m3 SRY 0.815 0.571 10 7 7 10 0.7000 0.7000 1.0000 R 2
oligos_6nt_mkv1_m3 MA0868.3 oligos_6nt_mkv1_m3 SOX8 0.810 0.567 10 7 7 10 0.7000 0.7000 1.0000 R 1
oligos_6nt_mkv1_m3 MA0867.3 oligos_6nt_mkv1_m3 SOX4 0.704 0.563 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0102.5 oligos_6nt_mkv1_m3 CEBPA 0.837 0.558 10 10 8 12 0.6667 0.8000 0.8000 R 2
oligos_6nt_mkv1_m3 MA0836.3 oligos_6nt_mkv1_m3 CEBPD 0.824 0.524 10 8 7 11 0.6364 0.7000 0.8750 R 3
oligos_6nt_mkv1_m3 MA0700.3 oligos_6nt_mkv1_m3 LHX2 0.801 0.480 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA1561.2 oligos_6nt_mkv1_m3 SOX12 0.719 0.479 10 10 8 12 0.6667 0.8000 0.8000 R 2
oligos_6nt_mkv1_m3 MA0708.3 oligos_6nt_mkv1_m3 MSX2 0.797 0.478 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0709.2 oligos_6nt_mkv1_m3 Msx3 0.787 0.472 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0666.3 oligos_6nt_mkv1_m3 MSX1 0.785 0.471 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0879.3 oligos_6nt_mkv1_m3 DLX1 0.767 0.460 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0881.2 oligos_6nt_mkv1_m3 Dlx4 0.756 0.453 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0027.3 oligos_6nt_mkv1_m3 EN1 0.755 0.453 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0890.2 oligos_6nt_mkv1_m3 GBX2 0.755 0.453 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0717.2 oligos_6nt_mkv1_m3 RAX2 0.753 0.452 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0880.2 oligos_6nt_mkv1_m3 Dlx3 0.752 0.451 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0699.2 oligos_6nt_mkv1_m3 LBX2 0.751 0.451 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0894.2 oligos_6nt_mkv1_m3 HESX1 0.751 0.450 10 6 6 10 0.6000 0.6000 1.0000 D 0
oligos_6nt_mkv1_m4 MA1593.2 oligos_6nt_mkv1_m4 ZNF317 0.898 0.449 10 8 6 12 0.5000 0.6000 0.7500 D -2
oligos_6nt_mkv1_m3 MA0718.2 oligos_6nt_mkv1_m3 RAX 0.748 0.449 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0909.4 oligos_6nt_mkv1_m3 Hoxd13 0.822 0.448 10 7 6 11 0.5455 0.6000 0.8571 R -1
oligos_6nt_mkv1_m3 MA0720.2 oligos_6nt_mkv1_m3 Shox2 0.745 0.447 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0125.2 oligos_6nt_mkv1_m3 Nobox 0.741 0.444 10 6 6 10 0.6000 0.6000 1.0000 D 0
oligos_6nt_mkv1_m3 MA0882.2 oligos_6nt_mkv1_m3 DLX6 0.741 0.444 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0716.2 oligos_6nt_mkv1_m3 PRRX1 0.738 0.443 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0721.2 oligos_6nt_mkv1_m3 UNCX 0.737 0.442 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0662.2 oligos_6nt_mkv1_m3 MIXL1 0.737 0.442 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0630.2 oligos_6nt_mkv1_m3 SHOX 0.736 0.442 10 6 6 10 0.6000 0.6000 1.0000 D 0
oligos_6nt_mkv1_m3 MA1505.2 oligos_6nt_mkv1_m3 HOXC8 0.732 0.439 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0654.2 oligos_6nt_mkv1_m3 ISX 0.729 0.437 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0634.2 oligos_6nt_mkv1_m3 ALX3 0.726 0.435 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m1 MA2341.1 oligos_6nt_mkv1_m1 FEZF2 0.703 0.433 13 8 8 13 0.6154 0.6154 1.0000 D 2
oligos_6nt_mkv1_m3 MA1577.2 oligos_6nt_mkv1_m3 TLX2 0.720 0.432 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m4 MA0508.4 oligos_6nt_mkv1_m4 PRDM1 0.790 0.431 10 7 6 11 0.5455 0.6000 0.8571 R 4
oligos_6nt_mkv1_m3 MA1481.2 oligos_6nt_mkv1_m3 DRGX 0.704 0.422 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m3 MA0705.2 oligos_6nt_mkv1_m3 Lhx8 0.702 0.421 10 6 6 10 0.6000 0.6000 1.0000 R 0
oligos_6nt_mkv1_m4 MA0092.2 oligos_6nt_mkv1_m4 Hand1::Tcf3 0.706 0.412 10 9 7 12 0.5833 0.7000 0.7778 R -2 
 Host name	rsat
 Job started	2025-05-16.184341
 Job done	2025-05-16.184403
 Seconds	2.99
	user	2.99
	system	1.09
	cuser	16.23
;	csystem	1.45