; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	32	59	1	1	1	63	1	0	0	62	1	2	3
c	33	0	8	62	63	1	8	65	63	0	0	58	58
g	0	5	56	1	0	0	56	0	1	3	64	4	3
t	0	1	0	1	1	1	0	0	1	0	0	1	1
//
; Sites	65
>site_0
AAGCCAGCGAGCC
>site_1
CAGCTAGCCAGTC
>site_2
CACCCAGCCAGCC
>site_3
AAGCCAGCCAGCC
>site_4
CAGCCAGCCAGAA
>site_5
AACCCCGCCAGCG
>site_6
AAGCCACCCAGCA
>site_7
AAGCCAGCCAGCC
>site_8
CAGCCAGCCAGCC
>site_9
AAGCCAGCCAGCC
>site_10
CAGCCAGCCAGCA
>site_11
AAGCCAGCCAGGC
>site_12
AGGCCACCCAGCC
>site_13
CACCCAGCCAGCC
>site_14
CAGCCAGCCAGCC
>site_15
CAGCCAGCCAGCC
>site_16
AAGCCAGCCAGCT
>site_17
CAGCCAGCTAGGC
>site_18
AGGCCAGCCAGCC
>site_19
CAGCCAGCCAGCC
>site_20
CAGCCAGCCGGCC
>site_21
AAGCCAGCCAGCC
>site_22
CAGCCAGCCAGCC
>site_23
AGGCAAGCCAGCC
>site_24
AAGCCAGCCAGCC
>site_25
CAGCCAGCCAGCC
>site_26
AAGCCAGCCGGCC
>site_27
CGGCCTACCAGCC
>site_28
CTACCAGCCAGCC
>site_29
AAGTCAGCCAGCC
>site_30
CACCCAGCCAGCC
>site_31
AAGCCACCCAGCC
>site_32
CACCCAGCCAGCC
>site_33
AAGCCAGCCAGCC
>site_34
CAGCCAGCCAGCC
>site_35
AAGACAGCCAGCC
>site_36
CAGCCAGCCAGCC
>site_37
AAGCCACCCAGCC
>site_38
AAGCCACCCAGCC
>site_39
CACCCAGCCAGCC
>site_40
CAGCCAGCCAACG
>site_41
AAGCCAGCCAGCC
>site_42
AAGCCAGCCAGCC
>site_43
CAGCCAGCCAGCC
>site_44
AAGCCACCCAGCC
>site_45
CACCCAGCCAGCC
>site_46
AAGCCAGCCAGCC
>site_47
CAGCCAGCCAGCG
>site_48
AAGCCAGCCGGCC
>site_49
AAGCCAGCCAGCC
>site_50
AAGCCAGCCAGCC
>site_51
CAGCCAGCCAGAC
>site_52
CAGGCAGCCAGGC
>site_53
AAGCCAGCCAGCC
>site_54
CAGCCAGCCAGCC
>site_55
AAGCCACCCAGCC
>site_56
AAGCCACCCAGCC
>site_57
AAGCCAGCCAGCC
>site_58
CACCCAGCCAGCC
>site_59
CAGCCAGCCAGGC
>site_60
AGGCCAGCCAGCC
>site_61
CAGCCAGCCAGCC
>site_62
CAGCCAGCCAGCC
>site_63
CAGCCAGCCAGCC
>site_64
CAGCCAGCCAGCC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	5	5	2	1	0	2	3	1	1	1	0	3	0	0	5	3
c	4	8	63	41	3	3	4	100	2	1	4	104	0	0	4	47
g	57	89	42	4	0	102	100	6	2	106	105	2	1	54	97	56
t	43	7	2	63	106	2	2	2	104	1	0	0	108	55	3	3
//
; Sites	109
>site_0
TTAGTGACTGGCTTAT
>site_1
GGCTTGGCTGGCTTGA
>site_2
GGATTGGCTGGCTTGG
>site_3
TCCTTGGCTGGATTGG
>site_4
TGGCTCGCTGGCTTCC
>site_5
GGCTTGGCTCGCTGGC
>site_6
GTCTTGGCTGGCTTGG
>site_7
GGCTTGGCTGGCTGGG
>site_8
GGCTTGGCTGGCTTGG
>site_9
TGGCTGGCTGGCTTGG
>site_10
TTTCTGGCTGGCTGGC
>site_11
TGCTTGGTTGGCTTTT
>site_12
TCGCTGGCGGGGTTGC
>site_13
GGCTTCGCTGGCGGGG
>site_14
GGCTTGGCTGGCTTCG
>site_15
GGCTTGGCTTGCTGGG
>site_16
GGCTTGGCTGGCTTGG
>site_17
GGCTTGGCTGGCTTGG
>site_18
TGGCTGGCTGGCTTGG
>site_19
TGGCTGGCTGGCTGGC
>site_20
GGCTTGGCTGGCTGGC
>site_21
GGCTTGGCTGGCTTGG
>site_22
TGGCTGGCTGGCTTGG
>site_23
TTGCTGGCTGGCTGGC
>site_24
GGCTTTGCTGGCTGGC
>site_25
GGCTTGGCTGGCTTTG
>site_26
GGCCTGGCTGGCTTGG
>site_27
TGGCTGGCTGGCTGGG
>site_28
TGGCTGGCTGGCTGGC
>site_29
GCCTTGGCTGGCTGGC
>site_30
GGCTTGGCTGCCTTGG
>site_31
TAGCTGGCTGGCTTGG
>site_32
GGCCTAGCTGGCTGGC
>site_33
CGGCTGGCTGGCTGGC
>site_34
GGCTTGGCCGGCTGGC
>site_35
GGCTTGGCTGGCTTGG
>site_36
TGGCTGGCTGGCTTGG
>site_37
TGGCTGGCTGGCTGGC
>site_38
GGCTTGGCTGGCTGGC
>site_39
GGCTTGCCTGGCTTGG
>site_40
GGCTTGGCTGGCTTGC
>site_41
TGGCTGGCTGGCTTGG
>site_42
TGGCTGGCTGGCTGGC
>site_43
GGCTTGGCTGGCTGGC
>site_44
AGGCCGGCTGGCTTGG
>site_45
CACTTGGCTGGCTGGT
>site_46
GACTTGGCTGCCTTGG
>site_47
TGGGTGGCTGGCTGAC
>site_48
AGCTTGGGTGGCTGGC
>site_49
GTCTTGCCTAGCTTGG
>site_50
GGCTTGGCTGGCTGGG
>site_51
GGCTTGGCTGGCTTGG
>site_52
CTGTTGGCTGGCTGGG
>site_53
TGGCTGGCTGGCTTGG
>site_54
TGGCTGGCTGGCTGGC
>site_55
GGCTTGGCTGGCTGGC
>site_56
GTCTTGGGTGGCTTGG
>site_57
TGGCTGGCTGGCTGTC
>site_58
GGCTTGGCTGGCTGGC
>site_59
GGCTTGGCTGGCTTGG
>site_60
CGGCTGGGTGGCTTGG
>site_61
GGCTTGGACGGCTGGG
>site_62
GGCTTGGCTGGCTTGG
>site_63
TCGTTGGCTGGCTGGG
>site_64
TGGCTGGCTGGCTTAG
>site_65
GGCTTGGCTGGCTGGC
>site_66
TGGCTGGCTGGCTTGG
>site_67
TGGCTGGCTGGCTGGC
>site_68
GGCTTGGCTGGCTGGC
>site_69
GGCTTGGCGGGCTTGG
>site_70
GGCTTGGCTGGCTGGG
>site_71
TGGCTGGCTGGCTTGG
>site_72
TCGCTGGCTGGCTGGC
>site_73
GGCTTCGCTGGCTGGC
>site_74
GGCTTGACTGGCTTCG
>site_75
AGGCCGGCTGGCTTGA
>site_76
GGCTTGGCTGGATTGG
>site_77
GGCTTGGGTGGCTTGC
>site_78
GGCTTGGCTGGCTTGG
>site_79
TGGCTGGCTGGCTTGG
>site_80
TAGGTGGCTGGCTGGC
>site_81
GGCTTAGGTGGCTGGC
>site_82
GGCTTGGCTGGCTTAG
>site_83
TGGCTGGCTGGCTTGG
>site_84
TGTCTGGCTGGCTGGC
>site_85
TACTTGTCTGGCTGGC
>site_86
TGGCTGTCTGGCTTAC
>site_87
GGCTTGGCTGGATGGC
>site_88
GGCTTGACAGGCTTGG
>site_89
GCCTTGCCTGGCTGCC
>site_90
GGCTTGGCTGCCTTGC
>site_91
TGGCTGGCTGGCTTGG
>site_92
TGGCTGGCTGGCTGGC
>site_93
GGCTTGGCTGGCTGGC
>site_94
GGCTTGGCTGGCTTGG
>site_95
GCCTTGGGTGGCTGGG
>site_96
AGCTTGGCTGCCTTGG
>site_97
GGCTTTGCTGGCTTGG
>site_98
TGGTTGGCTGGGTGGC
>site_99
GGCTTGGTTGGCTGGG
>site_100
TGGCTGGCTGGCTTGG
>site_101
TGGGTGGCTGGCTGGC
>site_102
GGCCTGGCTGGCTGGG
>site_103
TGGCTGGCTGGCTGGC
>site_104
TGGCTGGCTGGCTGGC
>site_105
TGGCTGGCTGGCTGGC
>site_106
TGGCTGGCTGGCTGGC
>site_107
GGCTTGGCTGGCTGGC
>site_108
ACCACGCCTGGCTTGA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
a	2	2	9	0	0	0	0	0	3	2
c	3	3	0	0	0	0	0	0	3	1
g	1	2	0	0	0	9	0	9	0	5
t	3	2	0	9	9	0	9	0	3	1
//
; Sites	9
>site_0
CCATTGTGCT
>site_1
TTATTGTGCG
>site_2
TGATTGTGTG
>site_3
CCATTGTGTG
>site_4
CTATTGTGAG
>site_5
ACATTGTGAA
>site_6
AAATTGTGCA
>site_7
GAATTGTGAG
>site_8
TGATTGTGTC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m3_rc.png
;
a	4	2	0	10	0	10	0	10	1	4
c	0	2	10	0	0	0	0	0	2	1
g	3	5	0	0	10	0	10	0	6	2
t	3	1	0	0	0	0	0	0	1	3
//
; Sites	10
>site_0
TGCAGAGAGA
>site_1
AACAGAGAGG
>site_2
AGCAGAGACT
>site_3
GGCAGAGAGG
>site_4
ACCAGAGACT
>site_5
GCCAGAGAGC
>site_6
GTCAGAGAGA
>site_7
TGCAGAGATT
>site_8
TGCAGAGAAA
>site_9
AACAGAGAGA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m4_rc.png
;
; Host name	rsat
; Job started	2025-05-16.184308
; Job done	2025-05-16.184309
; Seconds	0.13
;	user	0.13
;	system	0.05
;	cuser	0.98
;	csystem	0.18
